Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-81 305.4 156 100.0
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 6.8e-76 287.3 150 98.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 8.4e-74 280.4 144 99.3
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-73 279.6 155 93.5
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-72 275.8 150 94.0
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 1.5e-51 206.5 153 71.2
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 6.4e-50 201.1 150 72.7
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 6.4e-50 201.1 149 71.1
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 9.3e-49 197.2 152 67.1
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.6e-48 194.9 151 68.2
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.0e-48 194.5 151 67.5
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.0e-47 193.7 151 66.9
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 3.0e-47 192.2 149 67.1
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 3.0e-47 192.2 150 68.0
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-46 190.3 150 66.7
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-46 190.3 150 66.7
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.5e-46 189.9 149 66.4
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.9e-46 189.5 149 65.1
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 3.3e-46 188.7 150 66.0
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 3.3e-46 188.7 150 66.0
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 4.3e-46 188.3 149 64.4
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 2.1e-45 186.0 149 66.4
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-43 179.9 128 75.8
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.4e-41 173.3 94 93.6
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.2e-40 170.2 144 63.2
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.6e-40 169.9 146 61.6
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 6.0e-40 167.9 147 61.2
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 7.9e-40 167.5 149 58.4
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 5.1e-39 164.9 149 57.7
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.1e-39 164.9 154 57.1
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 8.7e-39 164.1 154 55.2
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.1e-38 163.7 149 58.4
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.9e-38 162.9 144 61.1
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.9e-38 162.9 144 61.1
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.9e-38 162.9 150 60.0
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.3e-38 161.8 151 57.0
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 4.8e-37 158.3 149 57.7
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.8e-37 158.3 153 54.2
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.3e-37 157.9 143 58.7
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 6.3e-37 157.9 148 58.8
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 8.2e-37 157.5 143 58.7
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.1e-36 157.1 150 56.7
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.8e-36 156.4 146 59.6
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-36 156.0 153 53.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-36 156.0 153 53.6
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 2.4e-36 156.0 153 52.9
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.1e-36 155.6 149 57.7
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.1e-36 155.6 153 52.9
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.1e-36 155.6 153 53.6
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.1e-36 155.6 143 56.6
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 3.1e-36 155.6 146 59.6
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 4.1e-36 155.2 155 55.5
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.3e-36 154.8 153 52.9
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 6.9e-36 154.5 159 55.3
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 9.0e-36 154.1 146 54.1
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 9.0e-36 154.1 151 55.6
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.2e-35 153.7 153 52.9
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.2e-35 153.7 154 52.6
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.2e-35 153.7 155 53.5
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 1.5e-35 153.3 149 58.4
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.6e-35 152.5 150 54.0
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 2.6e-35 152.5 155 54.8
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.4e-35 152.1 154 54.5
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 4.5e-35 151.8 146 55.5
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.0e-34 150.6 147 55.1
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.3e-34 150.2 162 54.3
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.7e-34 149.8 144 56.2
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.2e-34 149.4 153 51.6
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.9e-34 149.1 148 54.1
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 3.8e-34 148.7 152 53.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 5.0e-34 148.3 167 50.9
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 5.0e-34 148.3 153 52.9
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 8.5e-34 147.5 143 54.5
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.5e-33 146.0 144 53.5
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 3.2e-33 145.6 147 54.4
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 4.2e-33 145.2 166 50.0
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 4.2e-33 145.2 146 52.7
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 5.5e-33 144.8 170 48.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 5.5e-33 144.8 143 53.8
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 9.4e-33 144.1 154 51.3
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.2e-32 143.7 147 55.8
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 1.6e-32 143.3 143 54.5
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.1e-32 142.9 149 55.7
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 2.1e-32 142.9 153 52.3
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 2.7e-32 142.5 144 51.4
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 4.6e-32 141.7 144 51.4
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 6.1e-32 141.4 146 55.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 6.1e-32 141.4 143 54.5
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 6.1e-32 141.4 149 52.3
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 6.1e-32 141.4 168 51.2
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 6.1e-32 141.4 144 51.4
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.0e-31 140.6 150 55.3
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.0e-31 139.0 142 50.7
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.0e-31 139.0 142 50.7
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 5.1e-31 138.3 146 50.7
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 6.7e-31 137.9 147 49.7
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.5e-30 136.7 148 53.4
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.5e-30 136.7 151 49.7
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 2.0e-30 136.3 146 50.0
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 3.3e-30 135.6 143 49.0
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 5.7e-30 134.8 150 51.3
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 5.7e-30 134.8 143 51.0
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.7e-29 133.3 142 52.8
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.9e-28 127.9 147 49.0
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 1.2e-27 127.1 146 49.3
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 1.2e-27 127.1 142 50.7
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.5e-27 126.7 152 48.0
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 2.6e-27 125.9 160 45.0
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 7.7e-27 124.4 147 47.6
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.0e-26 124.0 147 46.9
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 2.5e-25 119.4 149 46.3
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.2e-24 117.1 148 45.3
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.4e-23 113.6 162 44.4
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.1e-22 110.5 156 44.2
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.0e-22 109.8 151 46.4
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 3.7e-21 105.5 61 85.2
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.4e-20 103.6 149 43.6
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 2.4e-20 102.8 147 41.5
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.1e-20 102.4 143 40.6
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 4.1e-20 102.1 138 42.8
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 5.3e-20 101.7 146 41.1
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.5e-19 98.6 146 40.4
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.5e-19 98.6 146 40.4
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.0e-18 97.4 147 40.1
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-18 97.1 146 39.7
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 2.2e-18 96.3 152 38.8
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 3.6e-16 89.0 147 37.4
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 5.7e-14 81.6 127 40.9
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 3.7e-13 79.0 66 60.6
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 1.3e-10 70.5 154 34.4
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.9e-10 69.3 43 74.4
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 3.6e-08 62.4 57 56.1


User provided reference genes

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