Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39327 Brassica carinata HOM05D001600 ORTHO05D001502 2.1e-58 228.8 115 100.0
BcaC07g39326 Brassica carinata HOM05D001600 ORTHO05D001502 1.4e-41 172.9 88 100.0
C08p23420 Brassica napus HOM05D001600 ORTHO05D001502 1.4e-41 172.9 88 100.0
BolC8t49970H Brassica oleracea HOM05D001600 ORTHO05D001502 9.0e-41 170.2 88 98.9
A06p19270 Brassica napus HOM05D001600 ORTHO05D001502 2.6e-40 168.7 88 97.7
BraA06t25010Z Brassica rapa HOM05D001600 ORTHO05D001502 2.6e-40 168.7 88 97.7
BcaB01g00812 Brassica carinata HOM05D001600 ORTHO05D001502 2.7e-37 158.7 88 94.3
BcaC07g39325 Brassica carinata HOM05D001600 ORTHO05D001502 2.7e-37 158.7 88 94.3
Carub.0001s2259 Capsella rubella HOM05D001600 ORTHO05D001502 4.9e-31 137.9 87 82.8
CARHR023450 Cardamine hirsuta HOM05D001600 ORTHO05D001502 8.4e-31 137.1 85 84.7
Thhalv10011000m.g Eutrema salsugineum HOM05D001600 ORTHO05D001502 3.2e-30 135.2 86 83.7
Sp5g13630 Schrenkiella parvula HOM05D001600 ORTHO05D001502 3.2e-30 135.2 86 81.4
AT1G23070 Arabidopsis thaliana HOM05D001600 ORTHO05D001502 9.3e-30 133.7 87 81.6
AL1G36640 Arabidopsis lyrata HOM05D001600 ORTHO05D001502 2.7e-29 132.1 87 80.5
Aa31LG4G13250 Aethionema arabicum HOM05D001600 ORTHO05D001502 9.0e-25 117.1 92 70.7
Hma1.2p1_0169F.1_g074440 Hydrangea macrophylla HOM05D001600 ORTHO05D001502 1.5e-24 116.3 92 67.4
Aqoxy7G01017 Aquilegia oxysepala HOM05D001600 ORTHO05D001502 2.2e-23 112.5 94 66.0
PSO421G0166 Papaver somniferum HOM05D001600 ORTHO05D001502 3.8e-23 111.7 90 67.8
Atru.chr7.1729 Acer truncatum HOM05D001600 ORTHO05D001502 6.5e-23 110.9 92 66.3
RcHm_v2.0_Chr2g0095421 Rosa chinensis HOM05D001600 ORTHO05D001502 1.4e-22 109.8 104 63.5
TWI34G1902 Tripterygium wilfordii HOM05D001600 ORTHO05D001502 1.4e-22 109.8 91 61.5
Haze_26033 Corylus avellana HOM05D001600 ORTHO05D001502 1.9e-22 109.4 91 65.9
PSO104G0006 Papaver somniferum HOM05D001600 ORTHO05D001502 1.9e-22 109.4 90 66.7
Ciclev10008735m.g Citrus clementina HOM05D001600 ORTHO05D001502 3.2e-22 108.6 92 60.9
COL.COLO4_18075 Corchorus olitorius HOM05D001600 ORTHO05D001502 3.2e-22 108.6 93 60.2
QL11p001140 Quercus lobata HOM05D001600 ORTHO05D001502 4.2e-22 108.2 100 61.0
CSS0008483 Camellia sinensis var. sinensis HOM05D001600 ORTHO05D001502 5.5e-22 107.8 93 62.4
Potri.018G062600 Populus trichocarpa HOM05D001600 ORTHO05D001502 7.2e-22 107.5 94 61.7
Cfa002969 Carpinus fangiana HOM05D001600 ORTHO05D001502 1.2e-21 106.7 91 62.6
FvH4_1g08970 Fragaria vesca HOM05D001600 ORTHO05D001502 1.2e-21 106.7 90 68.9
CSS0023165 Camellia sinensis var. sinensis HOM05D001600 ORTHO05D001502 1.6e-21 106.3 93 61.3
CiPaw.04G142100 Carya illinoinensis HOM05D001600 ORTHO05D001502 2.7e-21 105.5 91 61.5
Dinv25541 Davidia involucrata HOM05D001600 ORTHO05D001502 2.7e-21 105.5 87 67.8
Rhsim05G0005300 Rhododendron simsii HOM05D001600 ORTHO05D001502 2.7e-21 105.5 88 64.8
Cpa.g.sc28.19 Carica papaya HOM05D001600 ORTHO05D001502 3.5e-21 105.1 92 63.0
MD02G1095200 Malus domestica HOM05D001600 ORTHO05D001502 4.6e-21 104.8 95 66.3
TAR525G0004 Trochodendron aralioides HOM05D001600 ORTHO05D001502 4.6e-21 104.8 90 63.3
TAR626G0195 Trochodendron aralioides HOM05D001600 ORTHO05D001502 4.6e-21 104.8 90 63.3
Manes.16G093800 Manihot esculenta HOM05D001600 ORTHO05D001502 6.1e-21 104.4 91 67.0
CsaV3_2G001080 Cucumis sativus L. HOM05D001600 ORTHO05D001502 7.9e-21 104.0 102 58.8
Thecc.09G074500 Theobroma cacao HOM05D001600 ORTHO05D001502 7.9e-21 104.0 91 61.5
Actinidia39644 Actinidia chinensis HOM05D001600 ORTHO05D001502 1.3e-20 103.2 92 59.8
Eucgr.C03304 Eucalyptus grandis HOM05D001600 ORTHO05D001502 1.3e-20 103.2 92 60.9
Gohir.A06G077800 Gossypium hirsutum HOM05D001600 ORTHO05D001502 1.3e-20 103.2 95 61.1
Sed0015246 Sechium edule HOM05D001600 ORTHO05D001502 2.3e-20 102.4 91 61.5
Sopen07g021670 Solanum pennellii HOM05D001600 ORTHO05D001502 3.0e-20 102.1 87 63.2
Solyc07g042090.4 Solanum lycopersicum HOM05D001600 ORTHO05D001502 3.9e-20 101.7 87 63.2
CANSAT11G2466 Cannabis sativa HOM05D001600 ORTHO05D001502 5.1e-20 101.3 90 58.9
PGSC0003DMG400016039 Solanum tuberosum HOM05D001600 ORTHO05D001502 8.7e-20 100.5 86 62.8
arahy.Tifrunner.gnm1.ann1.ULF2Q7 Arachis hypogaea HOM05D001600 ORTHO05D001502 1.1e-19 100.1 91 59.3
arahy.Tifrunner.gnm1.ann1.WP4MJN Arachis hypogaea HOM05D001600 ORTHO05D001502 1.1e-19 100.1 91 59.3
MELO3C004661.2 Cucumis melo HOM05D001600 ORTHO05D001502 1.5e-19 99.8 94 60.6
THA.LOC104799614 Tarenaya hassleriana HOM05D001600 ORTHO05D001502 1.5e-19 99.8 96 57.3
EL10Ac8g19037 Beta vulgaris HOM05D001600 ORTHO05D001502 1.9e-19 99.4 92 58.7
Os03g0406900 Oryza sativa ssp. japonica HOM05D001600 ORTHO05D001502 2.5e-19 99.0 89 61.8
MBI04_g36068_MAGBIO Magnolia biondii HOM05D001600 ORTHO05D001502 3.3e-19 98.6 91 58.2
Prupe.7G196000 Prunus persica HOM05D001600 ORTHO05D001502 3.3e-19 98.6 81 67.9
AUR62025273 Chenopodium quinoa HOM05D001600 ORTHO05D001502 5.7e-19 97.8 91 60.4
Lsat_1_v5_gn_8_85681 Lactuca sativa HOM05D001600 ORTHO05D001502 5.7e-19 97.8 92 58.7
PGR044G2246 Punica granatum HOM05D001600 ORTHO05D001502 7.4e-19 97.4 91 56.0
Cc06_g12420 Coffea canephora HOM05D001600 ORTHO05D001502 1.3e-18 96.7 97 58.8
Gorai.010G089900 Gossypium raimondii HOM05D001600 ORTHO05D001502 1.3e-18 96.7 91 59.3
Gohir.D06G076800 Gossypium hirsutum HOM05D001600 ORTHO05D001502 1.6e-18 96.3 91 59.3
Sc18g0002700 Simmondsia chinensis HOM05D001600 ORTHO05D001502 2.2e-18 95.9 91 58.2
Nitab4.5_0000343g0400 Nicotiana tabacum HOM05D001600 ORTHO05D001502 2.8e-18 95.5 89 59.6
SGA_v2.0_scaffold21G09514 Striga asiatica HOM05D001600 ORTHO05D001502 2.8e-18 95.5 89 59.6
Sabra18G0051800 Salix brachista HOM05D001600 ORTHO05D001502 3.7e-18 95.1 95 57.9
TPR.G17325 Trifolium pratense HOM05D001600 ORTHO05D001502 4.8e-18 94.7 94 59.6
Nitab4.5_0003308g0010 Nicotiana tabacum HOM05D001600 ORTHO05D001502 8.2e-18 94.0 89 60.7
Glyma.09G071000 Glycine max HOM05D001600 ORTHO05D001502 1.1e-17 93.6 91 54.9
Peaxi162Scf00880g00319 Petunia axillaris HOM05D001600 ORTHO05D001502 1.4e-17 93.2 87 60.9
Ca_02215_v3 Cicer arietinum L. HOM05D001600 ORTHO05D001502 2.4e-17 92.4 92 56.5
ATR0006G030 Amborella trichopoda HOM05D001600 ORTHO05D001502 3.1e-17 92.0 91 58.2
Medtr2g042580 Medicago truncatula HOM05D001600 ORTHO05D001502 3.1e-17 92.0 92 55.4
ECA236G0841 Erigeron canadensis HOM05D001600 ORTHO05D001502 4.1e-17 91.7 93 52.7
CAN.G235.4 Capsicum annuum HOM05D001600 ORTHO05D001502 5.3e-17 91.3 89 56.2
Lalb_Chr11g0074171 Lupinus albus HOM05D001600 ORTHO05D001502 1.5e-16 89.7 93 53.8
vmacro17124 Vaccinium macrocarpon HOM05D001600 ORTHO05D001502 1.5e-16 89.7 102 52.9
VMungo1309G2549 Vigna mungo HOM05D001600 ORTHO05D001502 1.5e-16 89.7 91 50.5
GSVIVG01015052001 Vitis vinifera HOM05D001600 ORTHO05D001502 1.5e-16 89.7 86 57.0
Nn8g38594 Nelumbo nucifera HOM05D001600 ORTHO05D001502 2.0e-16 89.4 91 54.9
Zm00001eb019580 Zea mays HOM05D001600 ORTHO05D001502 2.6e-16 89.0 97 54.6
unitig_699.g19264 Utricularia gibba HOM05D001600 ORTHO05D001502 5.9e-16 87.8 115 47.0
Lj6g0011436 Lotus japonicus HOM05D001600 ORTHO05D001502 7.7e-16 87.4 94 52.1
HPP92_009414 Vanilla planifolia HOM05D001600 ORTHO05D001502 1.0e-15 87.0 89 56.2
Migut.L01578 Erythranthe guttata HOM05D001600 ORTHO05D001502 1.3e-15 86.7 94 52.1
Phvul.009G226100 Phaseolus vulgaris HOM05D001600 ORTHO05D001502 3.8e-15 85.1 91 48.4
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 6.5e-15 84.3 87 54.0
Dinv42410 Davidia involucrata HOM05D001600 ORTHO05D001502 9.4e-14 80.5 86 50.0
Lj7C688T19 Lonicera japonica HOM05D001600 ORTHO05D001502 1.6e-13 79.7 145 39.3
AUR62028275 Chenopodium quinoa HOM05D001600 ORTHO05D001502 2.1e-13 79.3 55 74.5
DCAR_011938 Daucus carota HOM05D001600 ORTHO05D001502 6.1e-13 77.8 86 50.0
CDE05G1319 Ceratophyllum demersum HOM05D001600 ORTHO05D001502 1.0e-12 77.0 95 46.3
Glyma.15G178900 Glycine max HOM05D001600 ORTHO05D001502 8.8e-12 73.9 87 48.3
SEGI_29137 Sequoiadendron giganteum HOM05D001600 ORTHO05D001502 4.3e-11 71.6 55 63.6
ClCG11G001360 Citrullus lanatus HOM05D001600 ORTHO05D001502 6.3e-10 67.8 77 53.2
HanXRQChr06g0178391 Helianthus annuus HOM05D001600 ORTHO05D001502 9.1e-09 63.9 67 50.7
Gohir.A01G174200 Gossypium hirsutum HOM05D001600 ORTHO05D001502 7.7e-08 60.8 67 46.3
Gohir.D01G165400 Gossypium hirsutum HOM05D001600 ORTHO05D001502 7.7e-08 60.8 67 46.3
Gorai.002G205800 Gossypium raimondii HOM05D001600 ORTHO05D001502 7.7e-08 60.8 67 46.3
unitig_21.g19999 Utricularia gibba HOM05D001600 ORTHO05D001502 7.7e-08 60.8 50 56.0
AagrBONN_evm.TU.Sc2ySwM_117.3509 Anthoceros agrestis HOM05D001600 ORTHO05D001502 1.0e-07 60.5 66 43.9
Mapoly0025s0082 Marchantia polymorpha HOM05D001600 ORTHO05D001502 1.0e-07 60.5 67 49.3
VMungo1309G0169 Vigna mungo HOM05D001600 ORTHO05D001502 1.3e-07 60.1 46 58.7
Pp3c12_10740 Physcomitrium patens HOM05D001600 ORTHO05D001502 1.7e-07 59.7 66 47.0
Haze_02055 Corylus avellana HOM05D001600 ORTHO05D001502 2.2e-07 59.3 46 56.5
Dinv23705 Davidia involucrata HOM05D001600 ORTHO05D001502 2.2e-07 59.3 46 54.3
Duzib052G0454 Durio zibethinus HOM05D001600 ORTHO05D001502 2.2e-07 59.3 67 47.8
Potri.004G204600 Populus trichocarpa HOM05D001600 ORTHO05D001502 2.2e-07 59.3 46 60.9
Thecc.02G045700 Theobroma cacao HOM05D001600 ORTHO05D001502 2.2e-07 59.3 46 58.7
arahy.Tifrunner.gnm1.ann1.E6G5ZN Arachis hypogaea HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
arahy.Tifrunner.gnm1.ann1.KU9ZEY Arachis hypogaea HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
Ca_15275_v3 Cicer arietinum L. HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
COL.COLO4_17939 Corchorus olitorius HOM05D001600 ORTHO05D001502 2.9e-07 58.9 67 47.8
Glyma.06G000800 Glycine max HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
Gohir.A01G001500 Gossypium hirsutum HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
Gohir.D01G001200 Gossypium hirsutum HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
Gorai.002G001700 Gossypium raimondii HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
Medtr3g118470 Medicago truncatula HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
Phvul.009G116100 Phaseolus vulgaris HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
Sabra04G0138100 Salix brachista HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 60.9
TPR.G38525 Trifolium pratense HOM05D001600 ORTHO05D001502 2.9e-07 58.9 46 56.5
CiPaw.05G088600 Carya illinoinensis HOM05D001600 ORTHO05D001502 3.8e-07 58.5 46 56.5
Gohir.A12G033800 Gossypium hirsutum HOM05D001600 ORTHO05D001502 3.8e-07 58.5 67 47.8
Gorai.008G040600 Gossypium raimondii HOM05D001600 ORTHO05D001502 3.8e-07 58.5 67 47.8
Pp3c4_13960 Physcomitrium patens HOM05D001600 ORTHO05D001502 5.0e-07 58.2 89 36.0
QL11p053918 Quercus lobata HOM05D001600 ORTHO05D001502 5.0e-07 58.2 46 56.5
Migut.H01021 Erythranthe guttata HOM05D001600 ORTHO05D001502 6.5e-07 57.8 46 54.3
Gohir.D12G038700 Gossypium hirsutum HOM05D001600 ORTHO05D001502 6.5e-07 57.8 67 47.8
Potri.009G165600 Populus trichocarpa HOM05D001600 ORTHO05D001502 6.5e-07 57.8 46 58.7
Prupe.8G177700 Prunus persica HOM05D001600 ORTHO05D001502 6.5e-07 57.8 46 54.3
Hund26076 Selenicereus undatus HOM05D001600 ORTHO05D001502 6.5e-07 57.8 68 54.4
CANSAT25G3809 Cannabis sativa HOM05D001600 ORTHO05D001502 8.5e-07 57.4 46 54.3
Glyma.04G001400 Glycine max HOM05D001600 ORTHO05D001502 8.5e-07 57.4 46 56.5
Nn6g31727 Nelumbo nucifera HOM05D001600 ORTHO05D001502 8.5e-07 57.4 46 54.3
Sed0002252 Sechium edule HOM05D001600 ORTHO05D001502 8.5e-07 57.4 45 55.6
THA.LOC104807796 Tarenaya hassleriana HOM05D001600 ORTHO05D001502 8.5e-07 57.4 67 46.3
Atru.chr5.3528 Acer truncatum HOM05D001600 ORTHO05D001502 1.1e-06 57.0 46 56.5
Psat5g000640 Pisum sativum HOM05D001600 ORTHO05D001502 1.1e-06 57.0 46 56.5
Lj1g0014703 Lotus japonicus HOM05D001600 ORTHO05D001502 1.4e-06 56.6 67 44.8
SalBow1G4733 Salvia bowleyana HOM05D001600 ORTHO05D001502 1.4e-06 56.6 46 52.2
SMO117G0312 Selaginella moellendorffii HOM05D001600 ORTHO05D001502 1.4e-06 56.6 66 42.4
SGA_v2.0_scaffold49G18306 Striga asiatica HOM05D001600 ORTHO05D001502 1.9e-06 56.2 46 52.2
TAR381G0958 Trochodendron aralioides HOM05D001600 ORTHO05D001502 2.5e-06 55.8 46 52.2
Aa31LG6G16780 Aethionema arabicum HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
Aqoxy6G01704 Aquilegia oxysepala HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 54.3
AL7G10230 Arabidopsis lyrata HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
BcaNung01989 Brassica carinata HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
BcaNung04225 Brassica carinata HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
BNapus_Darmor_BZH_scaffold_146p00130 Brassica napus HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
C07p63790 Brassica napus HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
BolC7t46789H Brassica oleracea HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
BraA06t27773Z Brassica rapa HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
CARHR294100 Cardamine hirsuta HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
ClCG02G003530 Citrullus lanatus HOM05D001600 ORTHO05D001502 3.2e-06 55.5 45 53.3
Thhalv10025065m.g Eutrema salsugineum HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
Lalb_Chr08g0246811 Lupinus albus HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
Sp7g37410 Schrenkiella parvula HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 52.2
GSVIVG01023892001 Vitis vinifera HOM05D001600 ORTHO05D001502 3.2e-06 55.5 46 54.3
Ciclev10028324m.g Citrus clementina HOM05D001600 ORTHO05D001502 4.2e-06 55.1 46 52.2
Eucgr.I01512 Eucalyptus grandis HOM05D001600 ORTHO05D001502 4.2e-06 55.1 46 54.3
Lsat_1_v5_gn_3_39640 Lactuca sativa HOM05D001600 ORTHO05D001502 4.2e-06 55.1 44 54.5
Lalb_Chr23g0264891 Lupinus albus HOM05D001600 ORTHO05D001502 4.2e-06 55.1 46 52.2
MD10G1138900 Malus domestica HOM05D001600 ORTHO05D001502 4.2e-06 55.1 46 52.2
Sc18g0005960 Simmondsia chinensis HOM05D001600 ORTHO05D001502 4.2e-06 55.1 46 54.3
Carub.0007s0025 Capsella rubella HOM05D001600 ORTHO05D001502 5.5e-06 54.7 46 50.0
Cpa.g.sc20.201 Carica papaya HOM05D001600 ORTHO05D001502 5.5e-06 54.7 46 54.3
Actinidia33699 Actinidia chinensis HOM05D001600 ORTHO05D001502 7.2e-06 54.3 46 47.8
DCAR_021226 Daucus carota HOM05D001600 ORTHO05D001502 7.2e-06 54.3 46 47.8
ECA246G5157 Erigeron canadensis HOM05D001600 ORTHO05D001502 7.2e-06 54.3 44 52.3
Oeu041301.1 Olea europaea HOM05D001600 ORTHO05D001502 7.2e-06 54.3 46 50.0
Pp3c4_16910 Physcomitrium patens HOM05D001600 ORTHO05D001502 7.2e-06 54.3 66 42.4
PGR142G3536 Punica granatum HOM05D001600 ORTHO05D001502 7.2e-06 54.3 43 55.8
HPP92_025976 Vanilla planifolia HOM05D001600 ORTHO05D001502 7.2e-06 54.3 47 51.1
Zm00001eb073930 Zea mays HOM05D001600 ORTHO05D001502 7.2e-06 54.3 95 32.6
Rhsim13G0133900 Rhododendron simsii HOM05D001600 ORTHO05D001502 9.4e-06 53.9 46 45.7
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 9.4e-06 53.9 46 45.7
RcHm_v2.0_Chr6g0280631 Rosa chinensis HOM05D001600 ORTHO05D001502 9.4e-06 53.9 46 52.2


User provided reference genes

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