Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39235 Brassica carinata HOM05D000960 ORTHO05D027170 2.3e-205 718.8 385 100.0
BraA08t34718Z Brassica rapa HOM05D000960 ORTHO05D000683 2.8e-86 323.2 278 72.7
A08p27860 Brassica napus HOM05D000960 ORTHO05D000683 3.8e-83 312.8 278 71.2
BcaB07g32403 Brassica carinata HOM05D000960 ORTHO05D000683 1.3e-80 304.3 281 69.0
C08p22340 Brassica napus HOM05D000960 ORTHO05D000683 4.3e-79 299.3 271 70.1
CARHR024540 Cardamine hirsuta HOM05D000960 ORTHO05D000683 1.6e-78 297.4 280 66.4
A09p40720 Brassica napus HOM05D000960 ORTHO05D000683 2.4e-77 293.5 279 66.3
Thhalv10007419m.g Eutrema salsugineum HOM05D000960 ORTHO05D000683 9.0e-77 291.6 279 67.0
BraA09t39566Z Brassica rapa HOM05D000960 ORTHO05D000683 2.0e-76 290.4 279 65.9
Sp1g21510 Schrenkiella parvula HOM05D000960 ORTHO05D000683 2.6e-76 290.0 282 67.0
BcaC05g26318 Brassica carinata HOM05D000960 ORTHO05D000683 3.4e-76 289.7 280 67.1
BolC5t31032H Brassica oleracea HOM05D000960 ORTHO05D000683 3.4e-76 289.7 280 67.1
C05p23320 Brassica napus HOM05D000960 ORTHO05D000683 8.4e-75 285.0 280 66.4
AT1G24160 Arabidopsis thaliana HOM05D000960 ORTHO05D000683 2.1e-73 280.4 279 62.7
Carub.0001s2365 Capsella rubella HOM05D000960 ORTHO05D000683 6.0e-73 278.9 287 62.0
AL1G37990 Arabidopsis lyrata HOM05D000960 ORTHO05D000683 1.7e-67 260.8 260 64.6
BcaB03g14118 Brassica carinata HOM05D000960 ORTHO05D000683 3.2e-66 256.5 279 62.7
BcaC06g35082 Brassica carinata HOM05D000960 ORTHO05D000683 1.3e-62 244.6 277 60.6
Aa31LG7G7930 Aethionema arabicum HOM05D000960 ORTHO05D000683 7.1e-50 202.2 278 55.8
THA.LOC104822064 Tarenaya hassleriana HOM05D000960 ORTHO05D000683 2.6e-44 183.7 284 49.3
C08p22350 Brassica napus HOM05D000960 ORTHO05D000683 1.6e-41 174.5 214 60.3
A07p36580 Brassica napus HOM05D000960 ORTHO05D000683 1.3e-38 164.9 280 49.3
BraA07t31224Z Brassica rapa HOM05D000960 ORTHO05D000683 1.3e-38 164.9 280 49.3
BolC6t39471H Brassica oleracea HOM05D000960 ORTHO05D000683 2.4e-37 160.6 283 48.4
BolC8t49875H Brassica oleracea HOM05D000960 ORTHO05D000683 6.9e-37 159.1 131 74.8
AT1G70100 Arabidopsis thaliana HOM05D000960 ORTHO05D000683 5.0e-35 152.9 267 46.1
THA.LOC104822949 Tarenaya hassleriana HOM05D000960 ORTHO05D000683 8.5e-35 152.1 272 46.7
Carub.0002s1677 Capsella rubella HOM05D000960 ORTHO05D000683 1.1e-34 151.8 274 44.5
C06p43980 Brassica napus HOM05D000960 ORTHO05D000683 4.7e-33 146.4 286 46.5
C08p22320 Brassica napus HOM05D000960 ORTHO05D000683 7.9e-33 145.6 113 77.9
BolC8t49877H Brassica oleracea HOM05D047870 ORTHO05D040379 2.0e-31 141.0 157 65.0
BolC7t42525H Brassica oleracea HOM05D000960 ORTHO05D000683 1.4e-29 134.8 223 46.6
BcaC07g40248 Brassica carinata HOM05D036033 ORTHO05D027170 1.0e-27 128.6 70 90.0
AL2G29350 Arabidopsis lyrata HOM05D000960 ORTHO05D000683 1.4e-26 124.8 271 42.1
QL03p067374 Quercus lobata HOM05D000960 ORTHO05D000683 1.9e-26 124.4 282 40.4
C02p19820 Brassica napus HOM05D036033 ORTHO05D027170 4.2e-26 123.2 76 80.3
BolC2t08118H Brassica oleracea HOM05D036033 ORTHO05D027170 4.2e-26 123.2 76 80.3
Sp5g25220 Schrenkiella parvula HOM05D000960 ORTHO05D000683 1.5e-23 114.8 340 35.9
Atru.chr11.1931 Acer truncatum HOM05D000960 ORTHO05D000683 2.6e-23 114.0 258 39.5
Thhalv10018633m.g Eutrema salsugineum HOM05D000960 ORTHO05D000683 8.2e-22 109.0 135 53.3
CARHR063190 Cardamine hirsuta HOM05D000960 ORTHO05D000683 1.8e-21 107.8 271 39.1
Cpa.g.sc5.326 Carica papaya HOM05D000960 ORTHO05D000683 4.1e-21 106.7 250 41.2
Ciclev10031371m.g Citrus clementina HOM05D000960 ORTHO05D000683 9.1e-21 105.5 253 38.7
Thecc.02G239300 Theobroma cacao HOM05D000960 ORTHO05D000683 7.7e-20 102.4 279 37.3
Phvul.002G077200 Phaseolus vulgaris HOM05D000960 ORTHO05D000683 2.9e-19 100.5 276 38.0
GSVIVG01020143001 Vitis vinifera HOM05D000960 ORTHO05D000683 2.9e-19 100.5 311 35.0
Gohir.A03G143900 Gossypium hirsutum HOM05D000960 ORTHO05D000683 1.1e-18 98.6 236 36.9
Gohir.D02G167000 Gossypium hirsutum HOM05D000960 ORTHO05D000683 1.1e-18 98.6 274 36.5
Gorai.005G187400 Gossypium raimondii HOM05D000960 ORTHO05D000683 1.5e-18 98.2 263 38.8
Sabra08G0146300 Salix brachista HOM05D000960 ORTHO05D000683 1.9e-18 97.8 247 36.8
VMungo1215G3280 Vigna mungo HOM05D000960 ORTHO05D000683 3.2e-18 97.1 236 39.8
Phvul.003G056200 Phaseolus vulgaris HOM05D000960 ORTHO05D000683 1.2e-17 95.1 253 40.3
CiPaw.06G076600 Carya illinoinensis HOM05D000960 ORTHO05D000683 2.1e-17 94.4 237 39.2
TAR374G1514 Trochodendron aralioides HOM05D000960 ORTHO05D000683 3.6e-17 93.6 289 34.6
Haze_12120 Corylus avellana HOM05D000960 ORTHO05D000683 4.7e-17 93.2 180 40.0
Lalb_Chr09g0326561 Lupinus albus HOM05D000960 ORTHO05D000683 4.7e-17 93.2 239 38.9
Medtr5g036560 Medicago truncatula HOM05D000960 ORTHO05D000683 6.1e-17 92.8 293 34.1
Potri.010G038100 Populus trichocarpa HOM05D000960 ORTHO05D000683 6.1e-17 92.8 290 35.2
Glyma.01G037700 Glycine max HOM05D000960 ORTHO05D000683 1.0e-16 92.0 249 35.7
Potri.008G192800 Populus trichocarpa HOM05D000960 ORTHO05D000683 2.3e-16 90.9 242 38.4
Glyma.02G027100 Glycine max HOM05D000960 ORTHO05D000683 6.7e-16 89.4 281 33.1
Sabra10G0028000 Salix brachista HOM05D000960 ORTHO05D000683 8.8e-16 89.0 269 36.4
Duzib268G1671 Durio zibethinus HOM05D000960 ORTHO05D000683 1.2e-15 88.6 216 37.5
Sabra10G0000200 Salix brachista HOM05D000960 ORTHO05D000683 1.5e-15 88.2 260 36.5
A08p27880 Brassica napus HOM05D000960 ORTHO05D027313 3.3e-15 87.0 193 39.9
BraA08t34720Z Brassica rapa HOM05D001714 ORTHO05D027313 3.3e-15 87.0 193 39.9
Manes.01G194900 Manihot esculenta HOM05D000960 ORTHO05D000683 4.4e-15 86.7 280 34.3
arahy.Tifrunner.gnm1.ann1.25IG2V Arachis hypogaea HOM05D000960 ORTHO05D000683 7.5e-15 85.9 214 38.3
arahy.Tifrunner.gnm1.ann1.SSVW3N Arachis hypogaea HOM05D000960 ORTHO05D000683 7.5e-15 85.9 241 36.5
COL.COLO4_36280 Corchorus olitorius HOM05D000960 ORTHO05D000683 7.5e-15 85.9 261 34.1
C08p22380 Brassica napus HOM05D047870 ORTHO05D040379 9.7e-15 85.5 157 49.7
Ca_24168_v3 Cicer arietinum L. HOM05D000960 ORTHO05D000683 9.7e-15 85.5 247 36.4
Glyma.08G292700 Glycine max HOM05D000960 ORTHO05D000683 9.7e-15 85.5 164 41.5
Manes.05G092100 Manihot esculenta HOM05D000960 ORTHO05D000683 9.7e-15 85.5 266 33.5
arahy.Tifrunner.gnm1.ann1.RCW3IX Arachis hypogaea HOM05D000960 ORTHO05D000683 1.3e-14 85.1 221 38.0
Hma1.2p1_0289F.1_g114630 Hydrangea macrophylla HOM05D000960 ORTHO05D000683 1.3e-14 85.1 280 31.8
Actinidia14992 Actinidia chinensis HOM05D000960 ORTHO05D000683 1.7e-14 84.7 277 34.3
Duzib248G0907 Durio zibethinus HOM05D000960 ORTHO05D000683 8.2e-14 82.4 203 39.9
VMungo0251G0151 Vigna mungo HOM05D000960 ORTHO05D000683 8.2e-14 82.4 256 36.3
Dinv31129 Davidia involucrata HOM05D000960 ORTHO05D000683 1.4e-13 81.6 290 34.5
Prupe.1G261800 Prunus persica HOM05D000960 ORTHO05D000683 1.4e-13 81.6 225 37.8
FvH4_4g35241 Fragaria vesca HOM05D000960 ORTHO05D000683 1.8e-13 81.3 225 37.3
FAN07G1284 Fragaria x ananassa HOM05D000960 ORTHO05D000683 1.8e-13 81.3 207 37.2
FAN12G2309 Fragaria x ananassa HOM05D000960 ORTHO05D000683 1.8e-13 81.3 225 37.3
CSS0040041 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 2.4e-13 80.9 233 36.9
Glyma.18G130700 Glycine max HOM05D000960 ORTHO05D000683 4.1e-13 80.1 247 35.6
Aqoxy3G03146 Aquilegia oxysepala HOM05D000960 ORTHO05D000683 9.1e-13 79.0 242 33.9
arahy.Tifrunner.gnm1.ann1.34UDDJ Arachis hypogaea HOM05D000960 ORTHO05D000683 9.1e-13 79.0 218 35.3
Dinv24919 Davidia involucrata HOM05D000960 ORTHO05D000683 1.6e-12 78.2 153 37.3
FAN17G2121 Fragaria x ananassa HOM05D000960 ORTHO05D000683 2.0e-12 77.8 221 37.1
FAN22G0818 Fragaria x ananassa HOM05D000960 ORTHO05D000683 2.7e-12 77.4 217 36.9
EL10Ac6g13105 Beta vulgaris HOM05D000960 ORTHO05D000683 5.9e-12 76.3 249 33.7
BcaC06g35077 Brassica carinata HOM05D000960 ORTHO05D000683 1.0e-11 75.5 166 39.8
Glyma.14G139300 Glycine max HOM05D000960 ORTHO05D000683 1.3e-11 75.1 148 41.2
Lj3A1047T40 Lonicera japonica HOM05D000960 ORTHO05D000683 1.7e-11 74.7 291 34.4
TPR.G17333 Trifolium pratense HOM05D000960 ORTHO05D000683 1.7e-11 74.7 201 37.8
Psat2g114120 Pisum sativum HOM05D000960 ORTHO05D000683 2.9e-11 73.9 276 34.1
Sed0020261 Sechium edule HOM05D000960 ORTHO05D000683 3.8e-11 73.6 154 40.9
vmacro01205 Vaccinium macrocarpon HOM05D000960 ORTHO05D000683 3.8e-11 73.6 272 33.5
RcHm_v2.0_Chr4g0444851 Rosa chinensis HOM05D000960 ORTHO05D000683 5.0e-11 73.2 222 36.9
MELO3C012033.2 Cucumis melo HOM05D000960 ORTHO05D000683 6.5e-11 72.8 248 35.5
AUR62026316 Chenopodium quinoa HOM05D000960 ORTHO05D000683 8.5e-11 72.4 93 50.5
C07p62370 Brassica napus HOM05D011618 ORTHO05D100478 1.5e-10 71.6 43 83.7
CSS0029704 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 1.9e-10 71.2 243 32.5
CsaV3_5G031970 Cucumis sativus L. HOM05D000960 ORTHO05D000683 3.2e-10 70.5 247 34.8
vmacro22660 Vaccinium macrocarpon HOM05D000960 ORTHO05D000683 3.2e-10 70.5 316 29.7
SalBow2G0989 Salvia bowleyana HOM05D000960 ORTHO05D000683 4.2e-10 70.1 264 34.8
Sc11g0001530 Simmondsia chinensis HOM05D000960 ORTHO05D000683 5.5e-10 69.7 60 61.7
Eucgr.B02573 Eucalyptus grandis HOM05D000960 ORTHO05D000683 7.2e-10 69.3 294 32.0
PSO832G4139 Papaver somniferum HOM05D000960 ORTHO05D000683 7.2e-10 69.3 263 33.5
Eucgr.B03376 Eucalyptus grandis HOM05D000960 ORTHO05D000683 9.4e-10 68.9 270 34.1
Lj2g0010544 Lotus japonicus HOM05D000960 ORTHO05D000683 1.2e-09 68.6 203 34.0
Lalb_Chr16g0382561 Lupinus albus HOM05D000960 ORTHO05D000683 1.2e-09 68.6 314 31.2
ECA233G0896 Erigeron canadensis HOM05D000960 ORTHO05D000683 1.6e-09 68.2 323 30.3
Rhsim12G0126300 Rhododendron simsii HOM05D000960 ORTHO05D000683 2.1e-09 67.8 308 30.2
SalBow2G1351 Salvia bowleyana HOM05D000960 ORTHO05D000683 2.1e-09 67.8 264 34.5
MD16G1084200 Malus domestica HOM05D000960 ORTHO05D000683 2.7e-09 67.4 202 35.6
MD13G1085000 Malus domestica HOM05D000960 ORTHO05D000683 8.0e-09 65.9 228 35.1
MSTRG.643 Avicennia marina HOM05D000960 ORTHO05D000683 1.0e-08 65.5 257 34.6
Cc11_g14030 Coffea canephora HOM05D000960 ORTHO05D000683 1.0e-08 65.5 298 32.2
BcaC06g35078 Brassica carinata HOM05D000960 ORTHO05D000683 1.8e-08 64.7 74 64.9
Lj6A799T77 Lonicera japonica HOM05D000960 ORTHO05D000683 3.0e-08 63.9 268 31.7
Hund25298 Selenicereus undatus HOM05D000960 ORTHO05D000683 3.0e-08 63.9 150 39.3
BcaB03g15631 Brassica carinata HOM05D011618 ORTHO05D092978 4.0e-08 63.5 38 78.9
AUR62026511 Chenopodium quinoa HOM05D000960 ORTHO05D000683 4.0e-08 63.5 186 34.4
Nn4g22945 Nelumbo nucifera HOM05D000960 ORTHO05D000683 4.0e-08 63.5 244 32.4
SalBow8G5044 Salvia bowleyana HOM05D000960 ORTHO05D000683 4.0e-08 63.5 221 33.0
Migut.L01382 Erythranthe guttata HOM05D000960 ORTHO05D000683 5.2e-08 63.2 268 31.7
Rhsim12G0051900 Rhododendron simsii HOM05D000960 ORTHO05D000683 6.8e-08 62.8 276 32.6
Lalb_Chr05g0217291 Lupinus albus HOM05D000960 ORTHO05D000683 8.8e-08 62.4 246 32.5
TWI75G0725 Tripterygium wilfordii HOM05D000960 ORTHO05D000683 8.8e-08 62.4 231 31.2
BcaC04g20441 Brassica carinata HOM05D011618 ORTHO05D018693 3.4e-07 60.5 33 87.9
C02p41310 Brassica napus HOM05D011618 ORTHO05D018693 3.4e-07 60.5 33 87.9
C09p43420 Brassica napus HOM05D011618 ORTHO05D018693 3.4e-07 60.5 33 87.9
C09p73790 Brassica napus HOM05D011618 ORTHO05D018693 3.4e-07 60.5 33 87.9
BolC9t57228H Brassica oleracea HOM05D011618 ORTHO05D018693 3.4e-07 60.5 33 87.9
BolC9t60113H Brassica oleracea HOM05D011618 ORTHO05D018693 3.4e-07 60.5 33 87.9
C06p35550 Brassica napus HOM05D063447 ORTHO05D041814 5.7e-07 59.7 79 48.1
BolC6t38676H Brassica oleracea HOM05D063447 ORTHO05D041814 5.7e-07 59.7 79 48.1
ClCG05G024930 Citrullus lanatus HOM05D000960 ORTHO05D000683 5.7e-07 59.7 248 30.6
Nitab4.5_0012783g0010 Nicotiana tabacum HOM05D000960 ORTHO05D000683 7.5e-07 59.3 55 60.0
Oeu015865.1 Olea europaea HOM05D000960 ORTHO05D000683 9.8e-07 58.9 270 30.4
Lsat_1_v5_gn_8_163061 Lactuca sativa HOM05D000960 ORTHO05D000683 1.7e-06 58.2 279 30.5
PGR119G2016 Punica granatum HOM05D000960 ORTHO05D000683 1.7e-06 58.2 241 32.0
C07p20060 Brassica napus HOM05D000960 ORTHO05D000683 2.2e-06 57.8 72 62.5
MSTRG.2374 Avicennia marina HOM05D000960 ORTHO05D000683 2.8e-06 57.4 200 36.0
C08p25840 Brassica napus HOM05D011618 ORTHO05D018693 4.8e-06 56.6 33 81.8
BolC8t50203H Brassica oleracea HOM05D011618 ORTHO05D018693 4.8e-06 56.6 33 81.8
PGSC0003DMG401001926 Solanum tuberosum HOM05D000960 ORTHO05D000683 6.3e-06 56.2 176 33.5
SGA_v2.0_scaffold166G38322 Striga asiatica HOM05D000960 ORTHO05D000683 6.3e-06 56.2 258 32.2
CAN.G549.9 Capsicum annuum HOM05D000960 ORTHO05D000683 8.3e-06 55.8 179 33.5
Oeu041245.2 Olea europaea HOM05D000960 ORTHO05D000683 8.3e-06 55.8 191 31.4
Sc04g0008700 Simmondsia chinensis HOM05D000960 ORTHO05D000683 8.3e-06 55.8 236 30.9


User provided reference genes

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