Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39224 Brassica carinata HOM05D008804 ORTHO05D011259 1.1e-65 253.1 123 100.0
C08p22190 Brassica napus HOM05D008804 ORTHO05D011259 4.3e-65 251.1 123 99.2
BolC8t49865H Brassica oleracea HOM05D008804 ORTHO05D011259 4.3e-65 251.1 123 99.2
A08p27940 Brassica napus HOM05D008804 ORTHO05D011259 1.1e-63 246.5 123 96.7
BraA08t34725Z Brassica rapa HOM05D008804 ORTHO05D011259 1.1e-63 246.5 123 96.7
BcaB03g11962 Brassica carinata HOM05D008804 ORTHO05D011259 4.4e-62 241.1 123 95.1
Sp1g21290 Schrenkiella parvula HOM05D008804 ORTHO05D011259 1.3e-50 203.0 115 86.1
A09p40860 Brassica napus HOM05D008804 ORTHO05D011259 5.8e-46 187.6 118 78.8
BraA09t39578Z Brassica rapa HOM05D008804 ORTHO05D011259 5.8e-46 187.6 118 78.8
BcaC05g26296 Brassica carinata HOM05D008804 ORTHO05D011259 1.3e-45 186.4 118 78.0
C05p23110 Brassica napus HOM05D008804 ORTHO05D011259 1.3e-45 186.4 118 78.0
BolC5t31010H Brassica oleracea HOM05D008804 ORTHO05D011259 1.3e-45 186.4 118 78.0
BolC5t31012H Brassica oleracea HOM05D008804 ORTHO05D011259 1.3e-45 186.4 118 78.0
BcaB07g32370 Brassica carinata HOM05D008804 ORTHO05D011259 4.9e-45 184.5 118 77.1
A07p13490 Brassica napus HOM05D008804 ORTHO05D011259 1.0e-42 176.8 121 77.7
BraA07t29120Z Brassica rapa HOM05D008804 ORTHO05D011259 1.3e-42 176.4 118 78.0
C07p20130 Brassica napus HOM05D008804 ORTHO05D011259 6.7e-42 174.1 118 77.1
BolC7t42534H Brassica oleracea HOM05D008804 ORTHO05D011259 6.7e-42 174.1 118 77.1
C07p25990 Brassica napus HOM05D008804 ORTHO05D011259 8.7e-42 173.7 118 77.1
BolC7t43128H Brassica oleracea HOM05D008804 ORTHO05D011259 8.7e-42 173.7 118 77.1
A07p13680 Brassica napus HOM05D008804 ORTHO05D011259 3.1e-39 165.2 112 77.7
BcaB03g14125 Brassica carinata HOM05D008804 ORTHO05D011259 5.3e-39 164.5 118 72.9
BcaB03g11961 Brassica carinata HOM05D008804 ORTHO05D011259 5.5e-28 127.9 124 56.5
A08p27950 Brassica napus HOM05D008804 ORTHO05D011259 9.3e-28 127.1 115 60.0
BraA08t34726Z Brassica rapa HOM05D008804 ORTHO05D011259 9.3e-28 127.1 115 60.0
C08p22180 Brassica napus HOM05D008804 ORTHO05D011259 1.6e-27 126.3 115 59.1
BolC8t49864H Brassica oleracea HOM05D008804 ORTHO05D011259 1.6e-27 126.3 115 59.1
Sp1g21280 Schrenkiella parvula HOM05D008804 ORTHO05D011259 2.1e-27 125.9 125 57.6
BcaB05g22564 Brassica carinata HOM05D008804 ORTHO05D011259 6.7e-26 120.9 92 65.2
BcaC05g26295 Brassica carinata HOM05D008804 ORTHO05D011259 8.5e-21 104.0 65 75.4
Thhalv10009502m.g Eutrema salsugineum HOM05D008804 ORTHO05D011259 1.4e-18 96.7 117 45.3
BcaC07g39223 Brassica carinata HOM05D008804 ORTHO05D011259 3.9e-18 95.1 79 60.8
AT1G24000 Arabidopsis thaliana HOM05D008804 ORTHO05D011259 1.3e-16 90.1 115 43.5
C08p22200 Brassica napus HOM05D009416 ORTHO05D014496 2.0e-14 82.8 124 39.5
Sp1g21300 Schrenkiella parvula HOM05D009416 ORTHO05D014496 3.4e-14 82.0 120 42.5
BcaB03g11964 Brassica carinata HOM05D009416 ORTHO05D014496 1.7e-13 79.7 124 36.3
A08p27930 Brassica napus HOM05D009416 ORTHO05D014496 1.7e-13 79.7 124 37.9
BraA08t34724Z Brassica rapa HOM05D009416 ORTHO05D014496 1.7e-13 79.7 124 37.9
Sp1g28840 Schrenkiella parvula HOM05D009416 ORTHO05D014496 1.7e-13 79.7 124 38.7
BolC8t49866H Brassica oleracea HOM05D009416 ORTHO05D014496 2.9e-13 79.0 122 39.3
Aa31LG7G7810 Aethionema arabicum HOM05D000197 ORTHO05D000114 6.5e-13 77.8 152 36.8
A07p13480 Brassica napus HOM05D000197 ORTHO05D000114 8.5e-13 77.4 117 41.0
AL1G37760 Arabidopsis lyrata HOM05D008804 ORTHO05D011259 1.2e-11 73.6 119 39.5
Sp1g21350 Schrenkiella parvula HOM05D000197 ORTHO05D000114 3.6e-11 72.0 85 45.9
AT1G24010 Arabidopsis thaliana HOM05D008804 ORTHO05D021419 4.7e-11 71.6 137 37.2
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 6.1e-11 71.2 152 33.6
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 3.9e-10 68.6 151 32.5
Sp1g21310 Schrenkiella parvula HOM05D008804 ORTHO05D021419 6.7e-10 67.8 135 32.6
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 1.1e-09 67.0 151 32.5
Carub.0001s2344 Capsella rubella HOM05D000197 ORTHO05D000114 1.1e-09 67.0 151 32.5
CARHR024320 Cardamine hirsuta HOM05D000197 ORTHO05D000114 1.1e-09 67.0 85 41.2
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 1.5e-09 66.6 151 32.5
C07p20100 Brassica napus HOM05D000197 ORTHO05D000114 1.5e-09 66.6 151 32.5
BolC7t42531H Brassica oleracea HOM05D000197 ORTHO05D000114 1.5e-09 66.6 151 32.5
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 1.5e-09 66.6 151 32.5
Thhalv10009521m.g Eutrema salsugineum HOM05D008804 ORTHO05D011259 3.3e-09 65.5 59 61.0
AL1G37780 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 5.7e-09 64.7 151 31.8
AT1G24020 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 5.7e-09 64.7 151 31.8
AT1G23910 Arabidopsis thaliana HOM05D008804 ORTHO05D011259 1.3e-08 63.5 69 46.4
arahy.Tifrunner.gnm1.ann1.02ERGG Arachis hypogaea HOM05D000197 ORTHO05D000114 2.8e-08 62.4 148 29.7
arahy.Tifrunner.gnm1.ann1.WH3HWC Arachis hypogaea HOM05D000197 ORTHO05D000114 2.8e-08 62.4 148 29.7
BcaB03g11965 Brassica carinata HOM05D009416 ORTHO05D014496 2.8e-08 62.4 113 34.5
Sp1g21330 Schrenkiella parvula HOM05D008804 ORTHO05D021419 3.7e-08 62.0 138 32.6
C08p22220 Brassica napus HOM05D009416 ORTHO05D014496 4.8e-08 61.6 113 37.2
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 4.8e-08 61.6 85 40.0
Carub.0008s0722 Capsella rubella HOM05D008804 ORTHO05D021419 6.3e-08 61.2 138 34.8
THA.LOC104822191 Tarenaya hassleriana HOM05D000197 ORTHO05D000114 6.3e-08 61.2 84 45.2
BolC3t21129H Brassica oleracea HOM05D000417 ORTHO05D011116 1.4e-07 60.1 80 38.8
BolC8t49867H Brassica oleracea HOM05D009416 ORTHO05D014496 1.4e-07 60.1 113 37.2
Ciclev10017039m.g Citrus clementina HOM05D000197 ORTHO05D000114 1.4e-07 60.1 85 38.8
Aa31LG4G10180 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.8e-07 59.7 85 38.8
BraA04t17372Z Brassica rapa HOM05D009416 ORTHO05D024478 1.8e-07 59.7 119 34.5
BolC6t39555H Brassica oleracea HOM05D000197 ORTHO05D000114 2.4e-07 59.3 87 37.9
COL.COLO4_13135 Corchorus olitorius HOM05D000197 ORTHO05D000114 2.4e-07 59.3 83 41.0
PSO017G6733 Papaver somniferum HOM05D000197 ORTHO05D000114 2.4e-07 59.3 86 36.0
Haze_10960 Corylus avellana HOM05D000197 ORTHO05D000114 3.1e-07 58.9 81 33.3
MELO3C012016.2 Cucumis melo HOM05D000197 ORTHO05D000114 3.1e-07 58.9 83 41.0
BcaC08g46534 Brassica carinata HOM05D000197 ORTHO05D000114 4.1e-07 58.5 86 38.4
C06p44950 Brassica napus HOM05D000197 ORTHO05D000114 4.1e-07 58.5 86 38.4
CsaV3_5G031770 Cucumis sativus L. HOM05D000197 ORTHO05D000114 4.1e-07 58.5 83 41.0
Oeu062656.1 Olea europaea HOM05D000197 ORTHO05D000114 4.1e-07 58.5 86 34.9
AL1G38840 Arabidopsis lyrata HOM05D008804 ORTHO05D021419 5.3e-07 58.2 139 31.7
A04p17490 Brassica napus HOM05D009416 ORTHO05D024478 5.3e-07 58.2 119 33.6
C03p88200 Brassica napus HOM05D000417 ORTHO05D011116 5.3e-07 58.2 80 38.8
PSO384G3017 Papaver somniferum HOM05D000197 ORTHO05D000114 5.3e-07 58.2 85 35.3
Sed0020136 Sechium edule HOM05D000197 ORTHO05D000114 5.3e-07 58.2 84 38.1
Cc11_g08390 Coffea canephora HOM05D000197 ORTHO05D000114 7.0e-07 57.8 86 34.9
BcaB03g14846 Brassica carinata HOM05D000197 ORTHO05D000114 9.1e-07 57.4 85 37.6
Glyma.01G034000 Glycine max HOM05D000197 ORTHO05D000114 9.1e-07 57.4 84 38.1
Glyma.02G032300 Glycine max HOM05D000197 ORTHO05D000114 9.1e-07 57.4 84 39.3
Hma1.2p1_1017F.1_g248290 Hydrangea macrophylla HOM05D000197 ORTHO05D000114 9.1e-07 57.4 84 38.1
BcaC02g08587 Brassica carinata HOM05D009416 ORTHO05D024478 1.2e-06 57.0 119 31.1
A07p37250 Brassica napus HOM05D000197 ORTHO05D000114 1.2e-06 57.0 130 31.5
C04p52250 Brassica napus HOM05D009416 ORTHO05D024478 1.2e-06 57.0 119 31.9
BolC4t26801H Brassica oleracea HOM05D009416 ORTHO05D024478 1.2e-06 57.0 119 31.9
BraA07t31285Z Brassica rapa HOM05D000197 ORTHO05D000114 1.2e-06 57.0 130 31.5
Gohir.D02G170200 Gossypium hirsutum HOM05D000197 ORTHO05D000114 1.2e-06 57.0 82 32.9
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 1.2e-06 57.0 84 40.5
EL10Ac1g01591 Beta vulgaris HOM05D000197 ORTHO05D000114 1.5e-06 56.6 85 43.5
CAN.G4322.1 Capsicum annuum HOM05D000197 ORTHO05D000114 1.5e-06 56.6 96 35.4
CiPaw.05G194900 Carya illinoinensis HOM05D000197 ORTHO05D000114 1.5e-06 56.6 78 35.9
Haze_10953 Corylus avellana HOM05D000197 ORTHO05D000114 1.5e-06 56.6 124 29.0
CiPaw.05G195100 Carya illinoinensis HOM05D000197 ORTHO05D000114 2.0e-06 56.2 88 37.5
PSO063G5952 Papaver somniferum HOM05D000197 ORTHO05D000114 2.0e-06 56.2 89 34.8
FvH4_4g32750 Fragaria vesca HOM05D000197 ORTHO05D000114 2.6e-06 55.8 82 31.7
Gorai.005G190800 Gossypium raimondii HOM05D000197 ORTHO05D000114 2.6e-06 55.8 82 32.9
Gorai.005G191000 Gossypium raimondii HOM05D000197 ORTHO05D000114 2.6e-06 55.8 82 32.9
QL05p058588 Quercus lobata HOM05D000197 ORTHO05D000114 2.6e-06 55.8 81 35.8
Sabra08G0100000 Salix brachista HOM05D000197 ORTHO05D000114 2.6e-06 55.8 85 32.9
C04p52260 Brassica napus HOM05D009416 ORTHO05D024055 3.4e-06 55.5 111 33.3
Cpa.g.c30095.2 Carica papaya HOM05D000197 ORTHO05D000114 3.4e-06 55.5 82 34.1
Nitab4.5_0001238g0070 Nicotiana tabacum HOM05D000197 ORTHO05D000114 3.4e-06 55.5 79 32.9
ClCG05G025130 Citrullus lanatus HOM05D000197 ORTHO05D000114 4.5e-06 55.1 84 38.1
Dinv18607 Davidia involucrata HOM05D000197 ORTHO05D000114 4.5e-06 55.1 84 35.7
Dinv26223 Davidia involucrata HOM05D000197 ORTHO05D000114 4.5e-06 55.1 84 35.7
Glyma.13G030200 Glycine max HOM05D000197 ORTHO05D000114 4.5e-06 55.1 78 37.2
PSO017G4226 Papaver somniferum HOM05D000197 ORTHO05D000114 4.5e-06 55.1 74 39.2
Psat4g179840 Pisum sativum HOM05D000197 ORTHO05D000114 4.5e-06 55.1 150 29.3
QL09p053306 Quercus lobata HOM05D000197 ORTHO05D000114 4.5e-06 55.1 93 32.3
AL1G38850 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 5.9e-06 54.7 78 37.2
AT1G70890 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 5.9e-06 54.7 85 35.3
BcaC02g08586 Brassica carinata HOM05D009416 ORTHO05D024055 5.9e-06 54.7 112 32.1
BolC4t26802H Brassica oleracea HOM05D009416 ORTHO05D024055 5.9e-06 54.7 112 32.1
Cpa.g.c36659 Carica papaya HOM05D000197 ORTHO05D000114 5.9e-06 54.7 150 26.0
Ca_04619_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 5.9e-06 54.7 84 38.1
COL.COLO4_13138 Corchorus olitorius HOM05D000197 ORTHO05D000114 5.9e-06 54.7 85 36.5
PSO017G0222 Papaver somniferum HOM05D000197 ORTHO05D000114 5.9e-06 54.7 73 39.7
PSO017G5940 Papaver somniferum HOM05D000197 ORTHO05D000114 5.9e-06 54.7 73 39.7
PSO384G1892 Papaver somniferum HOM05D000197 ORTHO05D000114 5.9e-06 54.7 89 32.6
Prupe.1G328800 Prunus persica HOM05D000197 ORTHO05D000114 5.9e-06 54.7 85 36.5
QL09p053276 Quercus lobata HOM05D000197 ORTHO05D000114 5.9e-06 54.7 85 32.9
PGSC0003DMG400008794 Solanum tuberosum HOM05D000197 ORTHO05D000114 5.9e-06 54.7 79 35.4
A04p17500 Brassica napus HOM05D009416 ORTHO05D024055 7.7e-06 54.3 119 31.1
BraA04t17373Z Brassica rapa HOM05D009416 ORTHO05D024055 7.7e-06 54.3 119 31.1
CANSAT64G1171 Cannabis sativa HOM05D000197 ORTHO05D000114 7.7e-06 54.3 82 32.9
Haze_10956 Corylus avellana HOM05D000197 ORTHO05D000114 7.7e-06 54.3 85 32.9
Haze_10961 Corylus avellana HOM05D000197 ORTHO05D000114 7.7e-06 54.3 81 33.3
Migut.L00544 Erythranthe guttata HOM05D000197 ORTHO05D000114 7.7e-06 54.3 80 37.5
VMungo1127G0230 Vigna mungo HOM05D000197 ORTHO05D000114 7.7e-06 54.3 78 32.1


User provided reference genes

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