Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39217 Brassica carinata HOM05D001322 ORTHO05D018504 3.9e-38 161.0 82 100.0
BcaC07g39216 Brassica carinata HOM05D001322 ORTHO05D018504 4.3e-29 131.0 65 98.5
C08p22130 Brassica napus HOM05D001322 ORTHO05D001301 5.4e-24 114.0 68 88.2
BolC8t49859H Brassica oleracea HOM05D001322 ORTHO05D001301 5.4e-24 114.0 68 88.2
BcaB07g32356 Brassica carinata HOM05D001322 ORTHO05D001301 1.1e-19 99.8 65 83.1
C05p22990 Brassica napus HOM05D001322 ORTHO05D001301 1.8e-19 99.0 65 81.5
Sp1g21190 Schrenkiella parvula HOM05D001322 ORTHO05D001301 4.0e-19 97.8 68 79.4
BcaC05g26289 Brassica carinata HOM05D001322 ORTHO05D001301 1.5e-18 95.9 65 80.0
BolC5t30998H Brassica oleracea HOM05D001322 ORTHO05D001301 1.5e-18 95.9 65 80.0
Carub.0001s2332 Capsella rubella HOM05D001322 ORTHO05D001301 2.6e-18 95.1 66 75.8
Thhalv10007822m.g Eutrema salsugineum HOM05D001322 ORTHO05D001301 3.4e-18 94.7 68 75.0
A08p28000 Brassica napus HOM05D001322 ORTHO05D001301 4.5e-18 94.4 65 73.8
BraA08t34730Z Brassica rapa HOM05D001322 ORTHO05D001301 4.5e-18 94.4 65 73.8
C05p43420 Brassica napus HOM05D001322 ORTHO05D018504 1.0e-17 93.2 65 73.8
BcaB03g11956 Brassica carinata HOM05D001322 ORTHO05D001301 1.7e-17 92.4 65 72.3
Aa31LG7G7700 Aethionema arabicum HOM05D001322 ORTHO05D001301 4.9e-17 90.9 63 74.6
AL1G37570 Arabidopsis lyrata HOM05D001322 ORTHO05D001301 4.9e-17 90.9 65 73.8
AT1G23820 Arabidopsis thaliana HOM05D001322 ORTHO05D001301 1.4e-16 89.4 65 73.8
CARHR024220 Cardamine hirsuta HOM05D001322 ORTHO05D001301 4.6e-15 84.3 61 68.9
A09p41000 Brassica napus HOM05D001322 ORTHO05D001301 1.8e-14 82.4 65 70.8
BraA09t39594Z Brassica rapa HOM05D001322 ORTHO05D001301 1.8e-14 82.4 65 70.8
A07p13770 Brassica napus HOM05D001322 ORTHO05D001301 2.3e-14 82.0 62 67.7
BcaC06g35054 Brassica carinata HOM05D001322 ORTHO05D001301 5.1e-14 80.9 65 67.7
C07p20240 Brassica napus HOM05D001322 ORTHO05D001301 5.1e-14 80.9 65 67.7
BraA07t29126Z Brassica rapa HOM05D001322 ORTHO05D001301 8.7e-14 80.1 62 66.1
THA.LOC104822962 Tarenaya hassleriana HOM05D001322 ORTHO05D001301 3.3e-13 78.2 68 61.8
BolC7t42546H Brassica oleracea HOM05D001322 ORTHO05D001301 5.7e-13 77.4 66 66.7
Carub.0002s1699 Capsella rubella HOM05D001322 ORTHO05D001301 1.6e-12 75.9 67 64.2
AL2G29610 Arabidopsis lyrata HOM05D001322 ORTHO05D001301 2.1e-12 75.5 67 61.2
Aa31LG7G7690 Aethionema arabicum HOM05D001322 ORTHO05D001301 3.7e-12 74.7 60 61.7
AT1G70310 Arabidopsis thaliana HOM05D001322 ORTHO05D001301 8.2e-12 73.6 67 58.2
BcaC06g35053 Brassica carinata HOM05D001322 ORTHO05D001301 1.1e-11 73.2 58 63.8
A07p13780 Brassica napus HOM05D001322 ORTHO05D001301 1.1e-11 73.2 58 63.8
C07p20250 Brassica napus HOM05D001322 ORTHO05D001301 1.1e-11 73.2 58 63.8
BolC7t42547H Brassica oleracea HOM05D001322 ORTHO05D001301 1.1e-11 73.2 58 63.8
Sp5g25440 Schrenkiella parvula HOM05D001322 ORTHO05D001301 1.4e-11 72.8 71 56.3
BraA07t29127Z Brassica rapa HOM05D001322 ORTHO05D001301 9.0e-11 70.1 58 62.1
RcHm_v2.0_Chr4g0444031 Rosa chinensis HOM05D001322 ORTHO05D001301 7.6e-10 67.0 53 58.5
CARHR063460 Cardamine hirsuta HOM05D001322 ORTHO05D018504 1.3e-09 66.2 66 59.1
FvH4_4g34680 Fragaria vesca HOM05D001322 ORTHO05D001301 6.5e-09 63.9 54 57.4
FAN12G0262 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.5e-09 63.9 54 57.4
FAN12G2107 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.5e-09 63.9 54 57.4
FAN17G0882 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.5e-09 63.9 54 57.4
FAN22G1376 Fragaria x ananassa HOM05D001322 ORTHO05D001301 6.5e-09 63.9 54 57.4
MD16G1091000 Malus domestica HOM05D001322 ORTHO05D001301 8.4e-09 63.5 56 60.7
Sabra10G0066900 Salix brachista HOM05D001322 ORTHO05D001301 8.4e-09 63.5 63 54.0
THA.LOC104822135 Tarenaya hassleriana HOM05D001322 ORTHO05D001301 8.4e-09 63.5 68 52.9
Hund25339 Selenicereus undatus HOM05D001322 ORTHO05D001301 2.5e-08 62.0 59 52.5
FAN07G0982 Fragaria x ananassa HOM05D001322 ORTHO05D001301 3.2e-08 61.6 54 55.6
SalBow2G0312 Salvia bowleyana HOM05D001322 ORTHO05D001301 3.2e-08 61.6 63 49.2
Cpa.g.sc1551.1 Carica papaya HOM05D001322 ORTHO05D001301 5.5e-08 60.8 61 45.9
Dinv24873 Davidia involucrata HOM05D001322 ORTHO05D001301 5.5e-08 60.8 58 53.4
Aqoxy3G00968 Aquilegia oxysepala HOM05D001322 ORTHO05D001301 9.3e-08 60.1 59 52.5
Thecc.02G244600 Theobroma cacao HOM05D001322 ORTHO05D001301 1.2e-07 59.7 54 51.9
CiPaw.06G074400 Carya illinoinensis HOM05D001322 ORTHO05D001301 1.6e-07 59.3 54 48.1
MD13G1090400 Malus domestica HOM05D001322 ORTHO05D001301 1.6e-07 59.3 54 55.6
Potri.010G094600 Populus trichocarpa HOM05D001322 ORTHO05D001301 1.6e-07 59.3 63 50.8
PGR119G2185 Punica granatum HOM05D001322 ORTHO05D001301 1.6e-07 59.3 54 55.6
Gohir.A03G140700 Gossypium hirsutum HOM05D001322 ORTHO05D001301 2.7e-07 58.5 56 55.4
Ciclev10031988m.g Citrus clementina HOM05D001322 ORTHO05D001301 3.5e-07 58.2 73 45.2
Gohir.D02G163500 Gossypium hirsutum HOM05D001322 ORTHO05D001301 3.5e-07 58.2 55 49.1
Cfa009106 Carpinus fangiana HOM05D001322 ORTHO05D001301 4.6e-07 57.8 55 50.9
Haze_12143 Corylus avellana HOM05D001322 ORTHO05D001301 4.6e-07 57.8 59 52.5
Hma1.2p1_0160F.1_g070720 Hydrangea macrophylla HOM05D001322 ORTHO05D001301 4.6e-07 57.8 59 47.5
Potri.008G147200 Populus trichocarpa HOM05D001322 ORTHO05D001301 4.6e-07 57.8 63 50.8
TAR371G0895 Trochodendron aralioides HOM05D001322 ORTHO05D001301 4.6e-07 57.8 64 50.0
Lalb_Chr05g0227831 Lupinus albus HOM05D001322 ORTHO05D001301 6.1e-07 57.4 60 48.3
TAR629G2073 Trochodendron aralioides HOM05D001322 ORTHO05D001301 6.1e-07 57.4 59 49.2
Dinv15315 Davidia involucrata HOM05D001322 ORTHO05D001301 7.9e-07 57.0 59 55.9
QL03p061719 Quercus lobata HOM05D001322 ORTHO05D001301 1.0e-06 56.6 54 51.9
TWI36G0723 Tripterygium wilfordii HOM05D001322 ORTHO05D001301 1.0e-06 56.6 61 50.8
TWI18G0882 Tripterygium wilfordii HOM05D001322 ORTHO05D001301 1.3e-06 56.2 61 50.8
COL.COLO4_36977 Corchorus olitorius HOM05D001322 ORTHO05D001301 2.3e-06 55.5 55 54.5
Manes.12G030300 Manihot esculenta HOM05D001322 ORTHO05D001301 2.3e-06 55.5 54 46.3
Manes.13G031400 Manihot esculenta HOM05D001322 ORTHO05D001301 2.3e-06 55.5 54 46.3
Gorai.005G183500 Gossypium raimondii HOM05D001322 ORTHO05D001301 3.9e-06 54.7 62 48.4
Prupe.1G255300 Prunus persica HOM05D001322 ORTHO05D001301 5.1e-06 54.3 55 52.7
Sabra08G0112000 Salix brachista HOM05D001322 ORTHO05D001301 5.1e-06 54.3 63 49.2
AUR62005360 Chenopodium quinoa HOM05D001322 ORTHO05D001301 6.7e-06 53.9 54 48.1
Sc04g0009090 Simmondsia chinensis HOM05D001322 ORTHO05D001301 6.7e-06 53.9 69 47.8
CANSAT01G2608 Cannabis sativa HOM05D001322 ORTHO05D001301 8.7e-06 53.5 54 48.1


User provided reference genes

Program Settings