Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 9.4e-201 703.4 366 100.0
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 5.7e-166 587.8 336 93.8
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 2.0e-158 562.8 389 80.2
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 9.9e-134 480.7 347 69.5
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.2e-131 473.8 345 69.3
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 7.6e-126 454.5 403 59.6
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 4.2e-124 448.7 411 59.6
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 9.3e-124 447.6 368 60.9
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 2.1e-120 436.4 306 72.2
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 2.4e-111 406.4 295 69.5
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 4.9e-109 398.7 298 68.1
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 6.7e-106 388.3 308 64.0
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 6.7e-106 388.3 310 64.5
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.1e-103 380.9 331 61.6
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.9e-100 370.2 346 54.3
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.5e-100 369.8 348 55.2
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.5e-100 369.8 348 55.2
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 3.2e-100 369.4 347 54.5
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.6e-99 367.1 378 51.1
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 2.7e-99 366.3 374 50.8
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.0e-98 364.4 382 50.0
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 9.0e-95 351.3 332 54.8
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 3.8e-93 345.9 363 51.0
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 8.5e-93 344.7 363 51.2
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.6e-91 340.5 330 53.3
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 7.9e-91 338.2 326 52.5
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.4e-90 337.4 335 52.5
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.8e-90 337.0 329 53.5
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.3e-90 336.7 335 52.2
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 3.0e-90 336.3 381 47.8
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 5.1e-90 335.5 329 52.6
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.1e-89 334.3 324 53.4
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.1e-89 334.3 328 52.1
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.1e-89 334.3 329 52.9
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 2.6e-89 333.2 333 51.7
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 5.7e-89 332.0 340 51.5
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.3e-88 330.9 327 52.3
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.7e-88 330.5 335 52.8
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.8e-88 329.7 330 52.7
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 3.7e-88 329.3 329 52.6
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 3.7e-88 329.3 331 51.4
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 6.3e-88 328.6 331 52.0
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 8.2e-88 328.2 323 52.6
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.1e-87 327.8 326 51.8
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 1.1e-87 327.8 334 52.4
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 1.4e-87 327.4 331 52.0
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.4e-87 326.6 301 58.5
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.1e-87 325.9 331 51.7
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 4.1e-87 325.9 331 51.7
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 6.9e-87 325.1 302 56.3
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 6.9e-87 325.1 337 49.0
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 6.9e-87 325.1 325 53.2
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 9.1e-87 324.7 320 50.9
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 2.0e-86 323.6 325 52.6
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.0e-86 323.6 283 57.6
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.4e-86 322.8 300 55.3
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 5.9e-86 322.0 322 52.2
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 2.2e-85 320.1 334 50.6
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 5.0e-85 318.9 328 50.9
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 6.5e-85 318.5 336 50.9
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.1e-84 317.8 305 53.4
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.1e-84 317.8 333 49.5
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.1e-84 317.8 320 51.6
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.9e-84 317.0 313 53.4
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.5e-84 316.6 295 53.9
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 3.2e-84 316.2 334 50.3
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.2e-84 316.2 300 54.0
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 4.2e-84 315.8 353 49.3
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 9.4e-84 314.7 320 50.6
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 9.4e-84 314.7 332 51.5
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.2e-83 314.3 327 51.4
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.1e-83 313.5 330 50.3
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.6e-83 312.8 330 50.3
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 4.7e-83 312.4 333 49.5
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 1.0e-82 311.2 331 49.5
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 3.0e-82 309.7 321 47.4
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.0e-82 309.7 326 49.4
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 3.0e-82 309.7 327 50.8
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 1.5e-81 307.4 297 50.8
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 1.5e-81 307.4 297 53.2
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.5e-81 307.4 313 51.8
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 2.0e-81 307.0 295 53.2
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.6e-81 306.6 324 50.0
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 5.7e-81 305.4 296 52.7
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 7.4e-81 305.1 317 51.1
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 9.7e-81 304.7 323 48.9
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 2.8e-80 303.1 304 51.0
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 2.8e-80 303.1 329 48.6
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.7e-80 302.8 320 49.7
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.7e-80 302.8 344 49.1
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 3.7e-80 302.8 379 45.4
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 3.7e-80 302.8 326 50.6
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 6.3e-80 302.0 293 52.6
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 6.3e-80 302.0 293 52.6
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 6.3e-80 302.0 293 53.2
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 6.3e-80 302.0 329 50.2
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 8.2e-80 301.6 293 53.2
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 7.0e-79 298.5 319 48.6
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 7.0e-79 298.5 299 51.5
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 9.1e-79 298.1 330 47.9
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.2e-78 297.7 297 53.2
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.2e-78 297.7 386 42.5
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 2.0e-78 297.0 312 47.4
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 2.6e-78 296.6 332 46.7
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.6e-78 296.6 332 48.8
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 3.5e-78 296.2 336 47.3
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 5.9e-78 295.4 325 48.9
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 1.0e-77 294.7 334 47.3
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.3e-77 294.3 299 49.5
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 6.5e-77 292.0 323 47.4
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.5e-76 290.8 321 47.4
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.5e-76 290.8 366 43.7
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-76 290.8 338 46.4
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 2.5e-76 290.0 292 52.1
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.1e-75 287.0 342 45.3
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 3.6e-75 286.2 297 50.2
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 8.0e-75 285.0 281 53.0
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.8e-74 283.9 337 47.2
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 1.8e-74 283.9 302 47.0
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 6.7e-74 282.0 296 49.7
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.2e-73 281.2 298 49.7
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 5.7e-73 278.9 206 65.5
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 5.7e-73 278.9 368 43.2
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 5.7e-73 278.9 363 43.8
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 4.8e-72 275.8 329 43.5
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.4e-71 274.2 346 44.2
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.8e-71 273.9 370 42.7
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 7.0e-71 271.9 326 46.3
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 7.0e-71 271.9 356 42.7
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.2e-70 271.2 306 48.0
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 3.5e-70 269.6 294 47.3
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 7.7e-70 268.5 304 49.0
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.8e-69 266.2 260 53.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 5.0e-69 265.8 328 45.4
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 6.5e-69 265.4 359 41.5
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 4.2e-68 262.7 386 41.2
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.2e-67 261.2 297 49.2
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.6e-67 260.8 201 60.7
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 4.7e-67 259.2 281 49.8
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 6.1e-67 258.8 376 42.3
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 8.0e-67 258.5 331 42.9
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.0e-66 258.1 371 41.2
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.5e-65 254.2 315 42.9
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 4.4e-65 252.7 379 38.5
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 2.2e-64 250.4 290 44.5
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 4.1e-63 246.1 302 42.4
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.6e-62 244.2 297 44.8
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 2.7e-62 243.4 321 41.1
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.2e-60 236.1 295 45.8
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.2e-59 234.6 179 62.0
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.7e-59 232.6 368 40.8
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.0e-57 227.3 289 43.3
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 6.3e-56 222.2 321 39.9
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.0e-54 217.2 310 42.9
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 2.3e-53 213.8 277 39.7
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.4e-47 192.6 295 41.0
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.0e-46 190.7 156 59.0
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-43 181.4 331 35.3
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 8.9e-42 175.3 335 34.3
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 3.7e-40 169.9 193 41.5
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.1e-39 168.3 310 33.5
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.4e-39 167.2 93 76.3
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 8.6e-29 132.1 74 73.0
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 2.8e-27 127.1 74 73.0
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 4.9e-24 116.3 110 44.5
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.8e-10 71.2 38 71.1
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.8e-10 71.2 51 58.8
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 2.0e-09 67.8 41 65.9
Cpa.g.c29767.2 Carica papaya HOM05D003920 ORTHO05D004877 1.6e-06 58.2 54 51.9


User provided reference genes

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