Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39119 Brassica carinata HOM05D003243 ORTHO05D003717 8.0e-70 266.9 131 100.0
BolC8t49722H Brassica oleracea HOM05D003243 ORTHO05D003717 3.2e-18 95.5 56 82.1
AL1G34520 Arabidopsis lyrata HOM05D003243 ORTHO05D003717 4.2e-18 95.1 56 80.4
BcaC07g39100 Brassica carinata HOM05D003243 ORTHO05D003717 4.2e-18 95.1 56 80.4
A08p28960 Brassica napus HOM05D003243 ORTHO05D003717 4.2e-18 95.1 56 80.4
BraA08t34829Z Brassica rapa HOM05D003243 ORTHO05D003717 4.2e-18 95.1 56 80.4
BcaB03g12816 Brassica carinata HOM05D003243 ORTHO05D003717 7.1e-18 94.4 56 76.8
C08p20820 Brassica napus HOM05D003243 ORTHO05D003717 7.1e-18 94.4 56 80.4
Aa31LG7G5480 Aethionema arabicum HOM05D003243 ORTHO05D003717 2.7e-17 92.4 56 76.8
C08p21050 Brassica napus HOM05D003243 ORTHO05D003717 4.6e-17 91.7 50 90.0
CARHR021800 Cardamine hirsuta HOM05D003243 ORTHO05D003717 4.6e-17 91.7 56 76.8
AT1G21410 Arabidopsis thaliana HOM05D003243 ORTHO05D003717 7.9e-17 90.9 56 76.8
Thhalv10008012m.g Eutrema salsugineum HOM05D003243 ORTHO05D003717 7.9e-17 90.9 56 76.8
C08p21070 Brassica napus HOM05D003243 ORTHO05D003717 1.0e-16 90.5 50 88.0
Carub.0001s2083 Capsella rubella HOM05D003243 ORTHO05D003717 1.0e-16 90.5 56 78.6
BolC8t49742H Brassica oleracea HOM05D003243 ORTHO05D003717 1.3e-16 90.1 50 88.0
Sp5g32170 Schrenkiella parvula HOM05D003243 ORTHO05D003717 1.3e-16 90.1 74 62.2
AT1G77000 Arabidopsis thaliana HOM05D003243 ORTHO05D003717 6.7e-16 87.8 56 73.2
Carub.0002s2392 Capsella rubella HOM05D003243 ORTHO05D003717 6.7e-16 87.8 56 71.4
Sp1g18960 Schrenkiella parvula HOM05D003243 ORTHO05D003717 8.7e-16 87.4 56 73.2
BcaC07g39118 Brassica carinata HOM05D003243 ORTHO05D003717 1.5e-15 86.7 44 93.2
CARHR070540 Cardamine hirsuta HOM05D003243 ORTHO05D003717 1.5e-15 86.7 56 71.4
THA.LOC104812061 Tarenaya hassleriana HOM05D003243 ORTHO05D003717 1.5e-15 86.7 60 68.3
Sc15g0007480 Simmondsia chinensis HOM05D003243 ORTHO05D003717 2.5e-15 85.9 60 66.7
FAN20G2537 Fragaria x ananassa HOM05D003243 ORTHO05D003717 3.3e-15 85.5 74 62.2
FAN27G0949 Fragaria x ananassa HOM05D003243 ORTHO05D003717 3.3e-15 85.5 74 62.2
FvH4_2g15180 Fragaria vesca HOM05D003243 ORTHO05D003717 4.3e-15 85.1 59 69.5
Sabra02G0058200 Salix brachista HOM05D003243 ORTHO05D003717 4.3e-15 85.1 69 62.3
BcaNung04682 Brassica carinata HOM05D003243 ORTHO05D003717 5.7e-15 84.7 101 47.5
A07p42630 Brassica napus HOM05D003243 ORTHO05D003717 5.7e-15 84.7 56 69.6
BolC6t40144H Brassica oleracea HOM05D003243 ORTHO05D003717 5.7e-15 84.7 56 69.6
BraA07t31785Z Brassica rapa HOM05D003243 ORTHO05D003717 5.7e-15 84.7 56 69.6
Hma1.2p1_0642F.1_g194370 Hydrangea macrophylla HOM05D003243 ORTHO05D003717 7.4e-15 84.3 56 67.9
Potri.002G074700 Populus trichocarpa HOM05D003243 ORTHO05D003717 9.6e-15 84.0 60 63.3
C06p31540 Brassica napus HOM05D003243 ORTHO05D003717 1.3e-14 83.6 56 67.9
C06p51220 Brassica napus HOM05D003243 ORTHO05D003717 1.3e-14 83.6 56 69.6
BolC6t38282H Brassica oleracea HOM05D003243 ORTHO05D003717 1.3e-14 83.6 56 67.9
Thhalv10018746m.g Eutrema salsugineum HOM05D003243 ORTHO05D003717 1.3e-14 83.6 56 69.6
CSS0014299 Camellia sinensis var. sinensis HOM05D003243 ORTHO05D003717 1.6e-14 83.2 56 69.6
Potri.005G185700 Populus trichocarpa HOM05D003243 ORTHO05D003717 3.7e-14 82.0 60 61.7
Aa31LG4G7070 Aethionema arabicum HOM05D003243 ORTHO05D003717 4.8e-14 81.6 56 69.6
BraA07t30455Z Brassica rapa HOM05D003243 ORTHO05D003717 4.8e-14 81.6 56 66.1
CANSAT21G2438 Cannabis sativa HOM05D003243 ORTHO05D003717 4.8e-14 81.6 47 80.9
Ah.05g169240 Amaranthus hybridus HOM05D003243 ORTHO05D003717 6.3e-14 81.3 52 69.2
AL2G37170 Arabidopsis lyrata HOM05D003243 ORTHO05D003717 6.3e-14 81.3 52 73.1
AUR62007671 Chenopodium quinoa HOM05D003243 ORTHO05D003717 6.3e-14 81.3 60 65.0
AUR62013463 Chenopodium quinoa HOM05D003243 ORTHO05D003717 6.3e-14 81.3 60 65.0
A07p28110 Brassica napus HOM05D003243 ORTHO05D003717 8.2e-14 80.9 56 66.1
Ciclev10001527m.g Citrus clementina HOM05D003243 ORTHO05D003717 8.2e-14 80.9 56 67.9
FAN15G3584 Fragaria x ananassa HOM05D003243 ORTHO05D003717 8.2e-14 80.9 56 69.6
FAN24G2686 Fragaria x ananassa HOM05D003243 ORTHO05D003717 8.2e-14 80.9 56 69.6
Manes.02G172600 Manihot esculenta HOM05D003243 ORTHO05D003717 8.2e-14 80.9 56 66.1
BcaB02g07094 Brassica carinata HOM05D003243 ORTHO05D003717 1.1e-13 80.5 56 67.9
BcaNung04680 Brassica carinata HOM05D003243 ORTHO05D003717 1.1e-13 80.5 56 67.9
BcaC08g47203 Brassica carinata HOM05D003243 ORTHO05D003717 1.4e-13 80.1 100 45.0
Hund04717 Selenicereus undatus HOM05D003243 ORTHO05D003717 1.4e-13 80.1 60 65.0
Manes.18G085100 Manihot esculenta HOM05D003243 ORTHO05D003717 1.8e-13 79.7 60 60.0
Cfa018393 Carpinus fangiana HOM05D003243 ORTHO05D003717 2.4e-13 79.3 56 69.6
Hma1.2p1_0107F.1_g051260 Hydrangea macrophylla HOM05D003243 ORTHO05D003717 2.4e-13 79.3 56 66.1
Thecc.08G138500 Theobroma cacao HOM05D003243 ORTHO05D003717 2.4e-13 79.3 60 61.7
Duzib093G1881 Durio zibethinus HOM05D003243 ORTHO05D003717 3.1e-13 79.0 106 44.3
Phvul.001G065400 Phaseolus vulgaris HOM05D003243 ORTHO05D003717 3.1e-13 79.0 56 69.6
Atru.chr13.1648 Acer truncatum HOM05D003243 ORTHO05D003717 4.1e-13 78.6 56 66.1
Glyma.11G178504 Glycine max HOM05D003243 ORTHO05D003717 4.1e-13 78.6 47 76.6
Glyma.13G036600 Glycine max HOM05D003243 ORTHO05D003717 4.1e-13 78.6 47 76.6
Rhsim11G0075000 Rhododendron simsii HOM05D003243 ORTHO05D003717 4.1e-13 78.6 56 64.3
vmacro00878 Vaccinium macrocarpon HOM05D003243 ORTHO05D003717 4.1e-13 78.6 56 64.3
Dinv25778 Davidia involucrata HOM05D003243 ORTHO05D003717 5.3e-13 78.2 48 75.0
Duzib116G0834 Durio zibethinus HOM05D003243 ORTHO05D003717 5.3e-13 78.2 60 61.7
Gohir.A05G240800 Gossypium hirsutum HOM05D003243 ORTHO05D003717 5.3e-13 78.2 56 66.1
Lsat_1_v5_gn_6_97240 Lactuca sativa HOM05D003243 ORTHO05D003717 5.3e-13 78.2 59 64.4
Nn1g06283 Nelumbo nucifera HOM05D003243 ORTHO05D003717 5.3e-13 78.2 56 64.3
Prupe.8G012800 Prunus persica HOM05D003243 ORTHO05D003717 5.3e-13 78.2 62 61.3
Actinidia29502 Actinidia chinensis HOM05D003243 ORTHO05D003717 6.9e-13 77.8 56 66.1
Gohir.A02G068700 Gossypium hirsutum HOM05D003243 ORTHO05D003717 6.9e-13 77.8 60 60.0
RcHm_v2.0_Chr6g0277841 Rosa chinensis HOM05D003243 ORTHO05D003717 6.9e-13 77.8 56 67.9
TWI34G0021 Tripterygium wilfordii HOM05D003243 ORTHO05D003717 6.9e-13 77.8 56 62.5
ATR0584G015 Amborella trichopoda HOM05D003243 ORTHO05D003717 9.0e-13 77.4 60 58.3
Haze_17675 Corylus avellana HOM05D003243 ORTHO05D003717 9.0e-13 77.4 56 67.9
Gohir.D02G075200 Gossypium hirsutum HOM05D003243 ORTHO05D003717 9.0e-13 77.4 60 60.0
Gohir.D05G242000 Gossypium hirsutum HOM05D003243 ORTHO05D003717 9.0e-13 77.4 56 66.1
Gorai.005G084600 Gossypium raimondii HOM05D003243 ORTHO05D003717 9.0e-13 77.4 60 60.0
Gorai.009G251400 Gossypium raimondii HOM05D003243 ORTHO05D003717 9.0e-13 77.4 56 66.1
SalBow6G3961 Salvia bowleyana HOM05D003243 ORTHO05D003717 9.0e-13 77.4 70 57.1
EL10Ac1g01412 Beta vulgaris HOM05D003243 ORTHO05D003717 1.2e-12 77.0 56 66.1
CAN.G46.5 Capsicum annuum HOM05D003243 ORTHO05D003717 1.2e-12 77.0 56 64.3
Glyma.14G118200 Glycine max HOM05D003243 ORTHO05D003717 1.2e-12 77.0 47 74.5
Lalb_Chr08g0240891 Lupinus albus HOM05D003243 ORTHO05D003717 1.2e-12 77.0 47 76.6
Sabra05G0141900 Salix brachista HOM05D003243 ORTHO05D003717 1.5e-12 76.6 56 62.5
GSVIVG01009981001 Vitis vinifera HOM05D003243 ORTHO05D003717 1.5e-12 76.6 56 64.3
Cpa.g.sc26.74 Carica papaya HOM05D003243 ORTHO05D003717 2.0e-12 76.3 56 60.7
CiPaw.16G019300 Carya illinoinensis HOM05D003243 ORTHO05D003717 2.0e-12 76.3 59 62.7
TPR.G25621 Trifolium pratense HOM05D003243 ORTHO05D003717 2.0e-12 76.3 47 74.5
TPR.G33350 Trifolium pratense HOM05D003243 ORTHO05D003717 2.0e-12 76.3 47 74.5
Ca_16639_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 2.6e-12 75.9 47 74.5
Sed0024660 Sechium edule HOM05D003243 ORTHO05D003717 2.6e-12 75.9 51 66.7
Hund17376 Selenicereus undatus HOM05D003243 ORTHO05D003717 2.6e-12 75.9 56 64.3
Actinidia15183 Actinidia chinensis HOM05D003243 ORTHO05D003717 3.4e-12 75.5 56 62.5
Lj1g0004319 Lotus japonicus HOM05D003243 ORTHO05D003717 3.4e-12 75.5 47 72.3
Eucgr.F02761 Eucalyptus grandis HOM05D003243 ORTHO05D003717 4.5e-12 75.1 53 67.9
HanXRQChr08g0232401 Helianthus annuus HOM05D003243 ORTHO05D003717 4.5e-12 75.1 56 62.5
Lj7A357T26 Lonicera japonica HOM05D003243 ORTHO05D003717 4.5e-12 75.1 56 62.5
CiPaw.15G024000 Carya illinoinensis HOM05D003243 ORTHO05D003717 5.9e-12 74.7 56 66.1
ECA246G0520 Erigeron canadensis HOM05D003243 ORTHO05D003717 5.9e-12 74.7 61 57.4
Glyma.06G120600 Glycine max HOM05D003243 ORTHO05D003717 5.9e-12 74.7 47 74.5
Medtr3g088895 Medicago truncatula HOM05D003243 ORTHO05D003717 5.9e-12 74.7 47 72.3
Hund26760 Selenicereus undatus HOM05D003243 ORTHO05D003717 5.9e-12 74.7 56 64.3
arahy.Tifrunner.gnm1.ann1.H9I2X3 Arachis hypogaea HOM05D003243 ORTHO05D003717 7.6e-12 74.3 47 70.2
arahy.Tifrunner.gnm1.ann1.QJLN12 Arachis hypogaea HOM05D003243 ORTHO05D003717 7.6e-12 74.3 54 64.8
Glyma.04G242700 Glycine max HOM05D003243 ORTHO05D003717 7.6e-12 74.3 47 72.3
HanXRQChr05g0160471 Helianthus annuus HOM05D003243 ORTHO05D003717 7.6e-12 74.3 59 57.6
THA.LOC104804863 Tarenaya hassleriana HOM05D003243 ORTHO05D003717 7.6e-12 74.3 56 64.3
THA.LOC104810056 Tarenaya hassleriana HOM05D003243 ORTHO05D003717 7.6e-12 74.3 56 64.3
Nn5g28514 Nelumbo nucifera HOM05D003243 ORTHO05D003717 1.0e-11 73.9 60 56.7
Nitab4.5_0000174g0050 Nicotiana tabacum HOM05D003243 ORTHO05D003717 1.0e-11 73.9 56 60.7
Nitab4.5_0003622g0030 Nicotiana tabacum HOM05D003243 ORTHO05D003717 1.0e-11 73.9 56 60.7
Peaxi162Scf00066g01516 Petunia axillaris HOM05D003243 ORTHO05D003717 1.0e-11 73.9 56 60.7
Psat5g082440 Pisum sativum HOM05D003243 ORTHO05D003717 1.0e-11 73.9 47 72.3
Psat6g039800 Pisum sativum HOM05D003243 ORTHO05D003717 1.3e-11 73.6 47 72.3
Actinidia25629 Actinidia chinensis HOM05D003243 ORTHO05D003717 1.7e-11 73.2 56 58.9
ClCG08G006300 Citrullus lanatus HOM05D003243 ORTHO05D003717 1.7e-11 73.2 56 62.5
MD05G1010400 Malus domestica HOM05D003243 ORTHO05D003717 1.7e-11 73.2 57 66.7
Ca_12653_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 2.9e-11 72.4 47 70.2
Ca_12670_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 2.9e-11 72.4 47 70.2
Gohir.A02G109500 Gossypium hirsutum HOM05D003243 ORTHO05D003717 2.9e-11 72.4 66 53.0
TAR628G1621 Trochodendron aralioides HOM05D003243 ORTHO05D003717 2.9e-11 72.4 59 59.3
VMungo1309G2691 Vigna mungo HOM05D003243 ORTHO05D003717 2.9e-11 72.4 47 72.3
PGR042G1914 Punica granatum HOM05D003243 ORTHO05D003717 3.8e-11 72.0 58 62.1
MSTRG.25343 Avicennia marina HOM05D003243 ORTHO05D003717 5.0e-11 71.6 48 68.8
Gohir.D03G062300 Gossypium hirsutum HOM05D003243 ORTHO05D003717 5.0e-11 71.6 67 53.7
PGSC0003DMG400024857 Solanum tuberosum HOM05D003243 ORTHO05D003717 5.0e-11 71.6 56 60.7
Dinv41147 Davidia involucrata HOM05D003243 ORTHO05D003717 6.5e-11 71.2 56 62.5
Medtr1g029500 Medicago truncatula HOM05D003243 ORTHO05D003717 6.5e-11 71.2 47 70.2
Phvul.009G133200 Phaseolus vulgaris HOM05D003243 ORTHO05D003717 6.5e-11 71.2 47 72.3
Solyc04g063380.3 Solanum lycopersicum HOM05D003243 ORTHO05D003717 6.5e-11 71.2 56 58.9
Sopen04g026300 Solanum pennellii HOM05D003243 ORTHO05D003717 6.5e-11 71.2 56 58.9
HPP92_025185 Vanilla planifolia HOM05D003243 ORTHO05D003717 6.5e-11 71.2 50 62.0
COL.COLO4_35492 Corchorus olitorius HOM05D003243 ORTHO05D003717 8.4e-11 70.9 72 54.2
CsaV3_6G031140 Cucumis sativus L. HOM05D003243 ORTHO05D003717 8.4e-11 70.9 56 60.7
MELO3C008429.2 Cucumis melo HOM05D003243 ORTHO05D003717 1.1e-10 70.5 56 60.7
Migut.C01093 Erythranthe guttata HOM05D003243 ORTHO05D003717 1.1e-10 70.5 51 64.7
Gorai.013G107300 Gossypium raimondii HOM05D003243 ORTHO05D003717 1.1e-10 70.5 60 55.0
PSO528G0160 Papaver somniferum HOM05D003243 ORTHO05D003717 1.1e-10 70.5 56 57.1
HanXRQChr04g0109701 Helianthus annuus HOM05D003243 ORTHO05D003717 1.4e-10 70.1 57 61.4
Oeu002390.1 Olea europaea HOM05D003243 ORTHO05D003717 1.4e-10 70.1 48 66.7
PSO170G2982 Papaver somniferum HOM05D003243 ORTHO05D003717 1.4e-10 70.1 56 57.1
Sed0017540 Sechium edule HOM05D003243 ORTHO05D003717 1.4e-10 70.1 47 66.0
unitig_82.g27082 Utricularia gibba HOM05D003243 ORTHO05D003717 1.4e-10 70.1 51 58.8
Lsat_1_v5_gn_1_9360 Lactuca sativa HOM05D003243 ORTHO05D003717 1.9e-10 69.7 61 52.5
Lalb_Chr11g0066321 Lupinus albus HOM05D003243 ORTHO05D003717 1.9e-10 69.7 47 70.2
Oeu001554.1 Olea europaea HOM05D003243 ORTHO05D003717 1.9e-10 69.7 56 57.1
TAR381G1399 Trochodendron aralioides HOM05D003243 ORTHO05D003717 2.5e-10 69.3 57 57.9
DCAR_010277 Daucus carota HOM05D003243 ORTHO05D003717 3.2e-10 68.9 56 55.4
Cc10_g13230 Coffea canephora HOM05D003243 ORTHO05D003717 4.2e-10 68.6 56 58.9
SalBow7G2939 Salvia bowleyana HOM05D003243 ORTHO05D003717 7.2e-10 67.8 48 64.6
SGA_v2.0_scaffold48G17925 Striga asiatica HOM05D003243 ORTHO05D003717 7.2e-10 67.8 48 62.5
Aqoxy6G00333 Aquilegia oxysepala HOM05D003243 ORTHO05D003717 9.3e-10 67.4 60 50.0
MSTRG.1390 Avicennia marina HOM05D003243 ORTHO05D003717 1.2e-09 67.0 54 57.4
ECA232G3205 Erigeron canadensis HOM05D003243 ORTHO05D003717 1.2e-09 67.0 48 60.4
MBI06_g27445_MAGBIO Magnolia biondii HOM05D003243 ORTHO05D003717 1.2e-09 67.0 56 53.6
HPP92_006892 Vanilla planifolia HOM05D003243 ORTHO05D003717 1.2e-09 67.0 60 51.7
CAN.G1540.1 Capsicum annuum HOM05D003243 ORTHO05D000045 1.6e-09 66.6 109 38.5
QL09p029494 Quercus lobata HOM05D003243 ORTHO05D003717 2.1e-09 66.2 48 68.8
Os05g0425700 Oryza sativa ssp. japonica HOM05D003243 ORTHO05D003717 6.1e-09 64.7 48 58.3
CDE04G2857 Ceratophyllum demersum HOM05D003243 ORTHO05D003717 7.9e-09 64.3 56 53.6
DCAR_001093 Daucus carota HOM05D003243 ORTHO05D003717 7.9e-09 64.3 53 60.4
Lj1g0023277 Lotus japonicus HOM05D003243 ORTHO05D003717 7.9e-09 64.3 47 63.8
Oeu045988.1 Olea europaea HOM05D003243 ORTHO05D003717 7.9e-09 64.3 48 60.4
SGA_v2.0_scaffold19G08690 Striga asiatica HOM05D003243 ORTHO05D003717 7.9e-09 64.3 48 62.5
Zm00001eb288390 Zea mays HOM05D003243 ORTHO05D003717 7.9e-09 64.3 48 58.3
Zm00001eb145730 Zea mays HOM05D003243 ORTHO05D003717 1.0e-08 63.9 48 58.3
Gohir.D06G114300 Gossypium hirsutum HOM05D003243 ORTHO05D003717 1.3e-08 63.5 102 40.2
Os01g0881900 Oryza sativa ssp. japonica HOM05D003243 ORTHO05D003717 1.3e-08 63.5 48 60.4
Ca_23406_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 1.8e-08 63.2 115 37.4
unitig_0.g2110 Utricularia gibba HOM05D003243 ORTHO05D003717 1.8e-08 63.2 48 56.2
Gorai.006G096600 Gossypium raimondii HOM05D003243 ORTHO05D003717 2.3e-08 62.8 52 57.7
Gorai.010G130600 Gossypium raimondii HOM05D003243 ORTHO05D003717 1.5e-07 60.1 56 51.8
HanXRQChr04g0109741 Helianthus annuus HOM05D003243 ORTHO05D003717 1.3e-06 57.0 57 50.9
CDE12G0899 Ceratophyllum demersum HOM05D003243 ORTHO05D003717 1.6e-06 56.6 46 56.5
HanXRQChr04g0109711 Helianthus annuus HOM05D003243 ORTHO05D003717 1.6e-06 56.6 50 50.0


User provided reference genes

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