Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39096 Brassica carinata HOM05D000247 ORTHO05D003114 2.9e-25 117.9 62 100.0
A01p13910 Brassica napus HOM05D000247 ORTHO05D003114 4.6e-15 84.0 62 79.0
BraA01t01337Z Brassica rapa HOM05D000247 ORTHO05D003114 4.6e-15 84.0 62 79.0
Thhalv10025227m.g Eutrema salsugineum HOM05D000247 ORTHO05D003114 4.6e-15 84.0 62 79.0
BcaB03g11741 Brassica carinata HOM05D000247 ORTHO05D003114 2.3e-14 81.6 62 75.8
Aa31LG6G4630 Aethionema arabicum HOM05D000247 ORTHO05D003114 3.0e-14 81.3 62 74.2
Sp7g20690 Schrenkiella parvula HOM05D000247 ORTHO05D003114 3.0e-14 81.3 62 75.8
BcaC01g00792 Brassica carinata HOM05D000247 ORTHO05D003114 1.1e-13 79.3 62 74.2
C03p84320 Brassica napus HOM05D000247 ORTHO05D003114 1.1e-13 79.3 62 74.2
BraA08t33563Z Brassica rapa HOM05D000247 ORTHO05D003114 1.1e-13 79.3 62 74.2
BolC3t20720H Brassica oleracea HOM05D000247 ORTHO05D003114 2.5e-13 78.2 62 72.6
A08p15880 Brassica napus HOM05D000247 ORTHO05D003114 7.3e-13 76.6 62 72.6
FAN13G1145 Fragaria x ananassa HOM05D000247 ORTHO05D003114 1.6e-12 75.5 62 69.4
FvH4_5g00470 Fragaria vesca HOM05D000247 ORTHO05D003114 2.1e-12 75.1 62 69.4
FAN04G1994 Fragaria x ananassa HOM05D000247 ORTHO05D003114 8.1e-12 73.2 62 67.7
FAN08G1933 Fragaria x ananassa HOM05D000247 ORTHO05D003114 8.1e-12 73.2 62 67.7
MD04G1080700 Malus domestica HOM05D000247 ORTHO05D003114 8.1e-12 73.2 62 67.7
FAN18G2369 Fragaria x ananassa HOM05D000247 ORTHO05D003114 1.4e-11 72.4 62 67.7
THA.LOC104813785 Tarenaya hassleriana HOM05D000247 ORTHO05D003114 1.4e-11 72.4 62 66.1
RcHm_v2.0_Chr7g0202041 Rosa chinensis HOM05D000247 ORTHO05D003114 2.3e-11 71.6 62 66.1
arahy.Tifrunner.gnm1.ann1.Y4ZXGE Arachis hypogaea HOM05D000247 ORTHO05D003114 6.8e-11 70.1 62 66.1
arahy.Tifrunner.gnm1.ann1.Z2YVAL Arachis hypogaea HOM05D000247 ORTHO05D003114 6.8e-11 70.1 62 66.1
Aqoxy7G00684 Aquilegia oxysepala HOM05D000247 ORTHO05D003114 1.2e-10 69.3 62 62.9
Oeu024054.1 Olea europaea HOM05D000247 ORTHO05D003114 1.5e-10 68.9 62 62.9
Prupe.5G077400 Prunus persica HOM05D000247 ORTHO05D003114 1.5e-10 68.9 62 64.5
PSO478G2803 Papaver somniferum HOM05D000247 ORTHO05D003114 2.0e-10 68.6 62 61.3
PSO782G2490 Papaver somniferum HOM05D000247 ORTHO05D003114 2.0e-10 68.6 62 61.3
Peaxi162Scf00002g00313 Petunia axillaris HOM05D000247 ORTHO05D003114 2.0e-10 68.6 62 62.9
ECA233G0840 Erigeron canadensis HOM05D000247 ORTHO05D003114 2.6e-10 68.2 62 61.3
MBI04_g41965_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D003114 3.4e-10 67.8 62 62.9
MBI04_g44360_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D003114 3.4e-10 67.8 62 62.9
CSS0010154 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D003114 4.4e-10 67.4 62 64.5
HanXRQChr13g0393191 Helianthus annuus HOM05D000247 ORTHO05D003114 4.4e-10 67.4 62 61.3
Lj4g0008092 Lotus japonicus HOM05D000247 ORTHO05D003114 5.8e-10 67.0 62 64.5
ATR0829G193 Amborella trichopoda HOM05D000247 ORTHO05D003114 7.5e-10 66.6 62 61.3
COL.COLO4_23893 Corchorus olitorius HOM05D000247 ORTHO05D003114 7.5e-10 66.6 62 62.9
Dinv39094 Davidia involucrata HOM05D000528 ORTHO05D001569 7.5e-10 66.6 62 61.3
Psat4g068400 Pisum sativum HOM05D000247 ORTHO05D003114 7.5e-10 66.6 62 62.9
AUR62007455 Chenopodium quinoa HOM05D000247 ORTHO05D003114 9.8e-10 66.2 61 67.2
AUR62027277 Chenopodium quinoa HOM05D000247 ORTHO05D003114 9.8e-10 66.2 61 67.2
Lj2C210G3 Lonicera japonica HOM05D000247 ORTHO05D003114 9.8e-10 66.2 62 62.9
Lsat_1_v5_gn_6_2241 Lactuca sativa HOM05D000247 ORTHO05D003114 1.3e-09 65.9 62 59.7
Potri.001G118900 Populus trichocarpa HOM05D000247 ORTHO05D003114 1.3e-09 65.9 62 62.9
unitig_26.g9683 Utricularia gibba HOM05D000247 ORTHO05D003114 1.3e-09 65.9 62 61.3
vmacro14053 Vaccinium macrocarpon HOM05D000247 ORTHO05D003114 1.3e-09 65.9 62 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2062 Anthoceros agrestis HOM05D000247 ORTHO05D003114 1.7e-09 65.5 62 61.3
CiPaw.11G149400 Carya illinoinensis HOM05D000247 ORTHO05D003114 1.7e-09 65.5 62 61.3
CDE02G3193 Ceratophyllum demersum HOM05D000247 ORTHO05D003114 1.7e-09 65.5 62 61.3
Migut.E01692 Erythranthe guttata HOM05D000247 ORTHO05D003114 1.7e-09 65.5 62 61.3
Lj8C256G5 Lonicera japonica HOM05D000247 ORTHO05D003114 1.7e-09 65.5 62 59.7
Sabra01G0091800 Salix brachista HOM05D000247 ORTHO05D003114 1.7e-09 65.5 62 61.3
CDE11G0702 Ceratophyllum demersum HOM05D000247 ORTHO05D003114 2.2e-09 65.1 62 61.3
Thecc.03G259500 Theobroma cacao HOM05D000247 ORTHO05D003114 2.2e-09 65.1 62 61.3
Lalb_Chr05g0225481 Lupinus albus HOM05D000247 ORTHO05D003114 2.9e-09 64.7 62 61.3
Manes.01G074500 Manihot esculenta HOM05D000247 ORTHO05D003114 2.9e-09 64.7 62 61.3
Medtr4g102390 Medicago truncatula HOM05D000247 ORTHO05D003114 2.9e-09 64.7 62 61.3
TPR.G37606 Trifolium pratense HOM05D000247 ORTHO05D003114 2.9e-09 64.7 62 59.7
Oeu016518.1 Olea europaea HOM05D000247 ORTHO05D003114 3.7e-09 64.3 62 59.7
Rhsim07G0103100 Rhododendron simsii HOM05D000247 ORTHO05D003114 3.7e-09 64.3 62 59.7
Zm00001eb210150 Zea mays HOM05D000247 ORTHO05D003114 3.7e-09 64.3 62 59.7
CiPaw.16G096400 Carya illinoinensis HOM05D000247 ORTHO05D003114 4.9e-09 63.9 62 59.7
Haze_08595 Corylus avellana HOM05D000247 ORTHO05D003114 4.9e-09 63.9 62 61.3
Gohir.D08G191800 Gossypium hirsutum HOM05D000247 ORTHO05D003114 4.9e-09 63.9 62 59.7
Eucgr.D02015 Eucalyptus grandis HOM05D000247 ORTHO05D003114 6.4e-09 63.5 62 59.7
Gohir.A11G020300 Gossypium hirsutum HOM05D000247 ORTHO05D003114 6.4e-09 63.5 62 61.3
Gorai.007G021300 Gossypium raimondii HOM05D000247 ORTHO05D003114 6.4e-09 63.5 62 61.3
Manes.02G034400 Manihot esculenta HOM05D000247 ORTHO05D003114 6.4e-09 63.5 62 59.7
Nn4g26345 Nelumbo nucifera HOM05D000247 ORTHO05D003114 6.4e-09 63.5 62 58.1
AT3G17880 Arabidopsis thaliana HOM05D000247 ORTHO05D003114 8.3e-09 63.2 62 58.1
CiPaw.12G105700 Carya illinoinensis HOM05D000247 ORTHO05D003114 1.1e-08 62.8 62 59.7
Nitab4.5_0010189g0020 Nicotiana tabacum HOM05D000247 ORTHO05D003114 1.1e-08 62.8 62 59.7
PGR031G1880 Punica granatum HOM05D000247 ORTHO05D003114 1.1e-08 62.8 62 56.5
Sc01g0009250 Simmondsia chinensis HOM05D000247 ORTHO05D003114 1.1e-08 62.8 62 61.3
Atru.chr9.1402 Acer truncatum HOM05D000247 ORTHO05D003114 1.4e-08 62.4 62 58.1
Duzib084G1381 Durio zibethinus HOM05D000247 ORTHO05D003114 1.4e-08 62.4 62 59.7
Os02g0100300 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D003114 1.4e-08 62.4 62 56.5
Gohir.A08G173000 Gossypium hirsutum HOM05D000247 ORTHO05D003114 1.9e-08 62.0 62 58.1
Gohir.D11G020000 Gossypium hirsutum HOM05D000247 ORTHO05D003114 1.9e-08 62.0 62 59.7
QL10p031032 Quercus lobata HOM05D000247 ORTHO05D003114 2.4e-08 61.6 62 56.5
Cpa.g.sc29.113 Carica papaya HOM05D000247 ORTHO05D003114 3.2e-08 61.2 62 58.1
Ca_20234_v3 Cicer arietinum L. HOM05D000247 ORTHO05D003114 3.2e-08 61.2 62 58.1
Gorai.004G201800 Gossypium raimondii HOM05D000247 ORTHO05D003114 3.2e-08 61.2 62 58.1
HanXRQChr13g0400971 Helianthus annuus HOM05D000247 ORTHO05D003114 3.2e-08 61.2 62 54.8
Nn1g01119 Nelumbo nucifera HOM05D000247 ORTHO05D003114 3.2e-08 61.2 62 58.1
TAR629G0900 Trochodendron aralioides HOM05D000247 ORTHO05D003114 3.2e-08 61.2 62 56.5
Glyma.05G051600 Glycine max HOM05D000247 ORTHO05D003114 4.1e-08 60.8 62 59.7
Glyma.17G133600 Glycine max HOM05D000247 ORTHO05D003114 4.1e-08 60.8 62 59.7
Mapoly0014s0097 Marchantia polymorpha HOM05D000247 ORTHO05D003114 4.1e-08 60.8 62 53.2
QL12p014248 Quercus lobata HOM05D000247 ORTHO05D003114 4.1e-08 60.8 62 58.1
SEGI_23698 Sequoiadendron giganteum HOM05D000247 ORTHO05D003114 4.1e-08 60.8 62 56.5
THA.LOC104820341 Tarenaya hassleriana HOM05D000247 ORTHO05D003114 4.1e-08 60.8 62 54.8
Aa31LG8G4750 Aethionema arabicum HOM05D000247 ORTHO05D003114 5.4e-08 60.5 60 56.7
Migut.O00229 Erythranthe guttata HOM05D000247 ORTHO05D003114 5.4e-08 60.5 62 56.5
Nitab4.5_0004482g0020 Nicotiana tabacum HOM05D000247 ORTHO05D003114 5.4e-08 60.5 62 56.5
Duzib205G0060 Durio zibethinus HOM05D000247 ORTHO05D003114 9.2e-08 59.7 62 58.1
Duzib205G1892 Durio zibethinus HOM05D000247 ORTHO05D003114 9.2e-08 59.7 62 58.1
Potri.012G045000 Populus trichocarpa HOM05D000247 ORTHO05D003114 9.2e-08 59.7 62 54.8
AL3G31040 Arabidopsis lyrata HOM05D000247 ORTHO05D003114 1.2e-07 59.3 62 54.8
Phvul.003G214200 Phaseolus vulgaris HOM05D000247 ORTHO05D003114 1.2e-07 59.3 62 56.5
Solyc03g118550.3 Solanum lycopersicum HOM05D000247 ORTHO05D003114 1.2e-07 59.3 62 53.2
TAR375G0185 Trochodendron aralioides HOM05D000247 ORTHO05D003114 1.2e-07 59.3 62 54.8
TAR629G1732 Trochodendron aralioides HOM05D000247 ORTHO05D003114 1.2e-07 59.3 62 56.5
MSTRG.11523 Avicennia marina HOM05D000247 ORTHO05D003114 1.6e-07 58.9 62 51.6
Actinidia14454 Actinidia chinensis HOM05D000247 ORTHO05D003114 2.1e-07 58.5 55 52.7
C08p20800 Brassica napus HOM05D000247 ORTHO05D003114 2.1e-07 58.5 45 68.9
Lsat_1_v5_gn_6_23281 Lactuca sativa HOM05D000247 ORTHO05D003114 2.1e-07 58.5 62 53.2
PSO478G4749 Papaver somniferum HOM05D000247 ORTHO05D003114 2.1e-07 58.5 62 54.8
ATR0753G096 Amborella trichopoda HOM05D000247 ORTHO05D003114 2.7e-07 58.2 62 56.5
Carub.0003s1759 Capsella rubella HOM05D000247 ORTHO05D003114 2.7e-07 58.2 62 54.8
CANSAT21G1126 Cannabis sativa HOM05D000247 ORTHO05D003114 3.5e-07 57.8 62 56.5
VMungo1215G1675 Vigna mungo HOM05D000247 ORTHO05D003114 3.5e-07 57.8 62 56.5
Thhalv10020954m.g Eutrema salsugineum HOM05D000247 ORTHO05D003114 4.6e-07 57.4 60 55.0
BcaB06g25851 Brassica carinata HOM05D000247 ORTHO05D003114 6.0e-07 57.0 60 51.7
Eucgr.H00536 Eucalyptus grandis HOM05D000247 ORTHO05D003114 6.0e-07 57.0 63 50.8
Oeu025919.1 Olea europaea HOM05D000247 ORTHO05D003114 7.8e-07 56.6 62 51.6
SalBow5G4045 Salvia bowleyana HOM05D000247 ORTHO05D003114 7.8e-07 56.6 62 51.6
CANSAT80G2617 Cannabis sativa HOM05D000247 ORTHO05D003114 1.0e-06 56.2 62 51.6
Sabra15G0029600 Salix brachista HOM05D000247 ORTHO05D003114 1.0e-06 56.2 62 51.6
GSVIVG01008455001 Vitis vinifera HOM05D000247 ORTHO05D003114 1.0e-06 56.2 62 51.6
CSS0013855 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D003114 1.3e-06 55.8 62 50.0
Gohir.A11G002800 Gossypium hirsutum HOM05D000247 ORTHO05D003114 1.7e-06 55.5 62 53.2
Atru.chr9.1666 Acer truncatum HOM05D000247 ORTHO05D003114 2.3e-06 55.1 62 53.2
AT4G22670 Arabidopsis thaliana HOM05D000247 ORTHO05D003114 2.3e-06 55.1 44 72.7
Duzib068G0168 Durio zibethinus HOM05D000247 ORTHO05D003114 2.3e-06 55.1 62 53.2
ECA232G2399 Erigeron canadensis HOM05D000247 ORTHO05D003114 2.3e-06 55.1 62 53.2
Potri.015G036000 Populus trichocarpa HOM05D000247 ORTHO05D003114 2.3e-06 55.1 62 50.0
GSVIVG01006027001 Vitis vinifera HOM05D000247 ORTHO05D003114 2.3e-06 55.1 53 58.5
Phvul.002G331300 Phaseolus vulgaris HOM05D000247 ORTHO05D003114 3.0e-06 54.7 62 51.6
VMungo0251G2344 Vigna mungo HOM05D000247 ORTHO05D003114 3.0e-06 54.7 62 51.6
Migut.H01297 Erythranthe guttata HOM05D000247 ORTHO05D003114 3.9e-06 54.3 62 51.6
Gorai.007G003400 Gossypium raimondii HOM05D000247 ORTHO05D003114 3.9e-06 54.3 62 53.2
MSTRG.11524 Avicennia marina HOM05D000247 ORTHO05D003114 5.1e-06 53.9 62 50.0
A05p31920 Brassica napus HOM05D000247 ORTHO05D003114 5.1e-06 53.9 60 50.0
BraA05t22023Z Brassica rapa HOM05D000247 ORTHO05D003114 5.1e-06 53.9 60 50.0
Cfa019632 Carpinus fangiana HOM05D000247 ORTHO05D003114 5.1e-06 53.9 62 53.2
Gohir.D11G002400 Gossypium hirsutum HOM05D000247 ORTHO05D003114 5.1e-06 53.9 62 53.2
Sp3g16000 Schrenkiella parvula HOM05D000247 ORTHO05D003114 5.1e-06 53.9 60 50.0
Hund14625 Selenicereus undatus HOM05D000247 ORTHO05D003114 5.1e-06 53.9 63 55.6
C05p48420 Brassica napus HOM05D000247 ORTHO05D003114 6.6e-06 53.5 60 50.0
Glyma.08G055600 Glycine max HOM05D000247 ORTHO05D003114 6.6e-06 53.5 62 48.4
Peaxi162Scf00102g01235 Petunia axillaris HOM05D000247 ORTHO05D003114 6.6e-06 53.5 55 52.7
Migut.E00882 Erythranthe guttata HOM05D000247 ORTHO05D003114 8.6e-06 53.1 57 56.1
FAN04G0502 Fragaria x ananassa HOM05D000247 ORTHO05D003114 8.6e-06 53.1 62 51.6
FAN13G1410 Fragaria x ananassa HOM05D000247 ORTHO05D003114 8.6e-06 53.1 62 51.6
FAN18G1699 Fragaria x ananassa HOM05D000247 ORTHO05D003114 8.6e-06 53.1 62 51.6


User provided reference genes

Program Settings