Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 5.9e-180 634.0 307 100.0
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 1.0e-147 526.9 329 82.4
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 2.5e-146 522.3 328 81.1
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 3.3e-138 495.4 328 78.4
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 3.0e-131 472.2 333 74.8
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 8.6e-131 470.7 322 73.9
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 1.1e-130 470.3 330 73.6
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 1.1e-130 470.3 330 73.6
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.5e-130 469.9 330 73.6
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 1.5e-130 469.9 321 75.1
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 2.5e-130 469.2 330 73.3
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 3.3e-130 468.8 330 73.3
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 7.3e-130 467.6 331 73.1
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 4.7e-129 464.9 324 73.8
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 1.7e-126 456.4 323 73.1
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 1.2e-124 450.3 303 75.2
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 1.4e-120 436.8 319 69.6
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 1.7e-118 429.9 327 68.2
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.0e-107 394.0 323 64.1
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 8.6e-107 391.0 324 63.0
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 1.9e-106 389.8 325 61.5
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 3.3e-106 389.0 324 61.7
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 3.3e-106 389.0 323 62.8
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.2e-105 387.1 323 62.8
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 2.8e-105 386.0 324 60.5
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 8.1e-105 384.4 324 61.1
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 8.1e-105 384.4 324 62.7
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.1e-104 384.0 321 61.4
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 6.8e-104 381.3 324 60.2
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 8.9e-104 380.9 323 62.5
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 8.9e-104 380.9 322 61.2
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 1.2e-103 380.6 332 61.1
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 2.6e-103 379.4 324 62.3
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 2.6e-103 379.4 322 61.2
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 3.4e-103 379.0 324 62.0
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 5.8e-103 378.3 332 59.9
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 5.8e-103 378.3 329 59.9
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 9.9e-103 377.5 325 61.5
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 9.9e-103 377.5 323 61.0
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 9.9e-103 377.5 326 59.5
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 1.3e-102 377.1 324 59.9
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.3e-102 377.1 324 61.7
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.3e-102 377.1 324 60.8
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 2.9e-102 375.9 323 61.3
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 2.9e-102 375.9 324 59.9
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 6.4e-102 374.8 324 60.2
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.9e-101 373.2 324 60.8
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 3.2e-101 372.5 325 59.1
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 3.2e-101 372.5 325 61.5
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 4.2e-101 372.1 320 60.6
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 9.3e-101 370.9 325 61.2
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.1e-100 369.8 324 59.6
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 3.5e-100 369.0 327 61.2
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.6e-100 368.6 324 59.3
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 4.6e-100 368.6 322 60.2
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 6.0e-100 368.2 324 58.6
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.3e-99 367.1 324 60.2
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.7e-99 366.7 333 58.9
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 1.7e-99 366.7 325 58.5
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 3.0e-99 365.9 333 58.9
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 3.0e-99 365.9 327 57.8
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 3.9e-99 365.5 329 59.6
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.9e-98 363.2 353 56.1
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.9e-98 363.2 325 58.2
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 4.3e-98 362.1 341 54.8
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 7.3e-98 361.3 323 57.6
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 7.3e-98 361.3 325 58.5
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 9.6e-98 360.9 329 57.4
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.3e-97 360.5 356 56.2
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.6e-97 360.1 323 57.9
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 2.1e-97 359.8 330 56.7
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 2.1e-97 359.8 325 57.8
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 4.8e-97 358.6 329 56.8
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 8.1e-97 357.8 325 57.5
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 1.1e-96 357.5 330 57.3
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.1e-96 357.5 325 57.8
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 4.0e-96 355.5 326 56.7
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 4.0e-96 355.5 325 56.9
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 2.0e-95 353.2 331 54.7
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 3.4e-95 352.4 325 59.1
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 4.5e-95 352.1 323 56.7
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 7.6e-95 351.3 324 58.0
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 7.6e-95 351.3 325 56.9
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 2.2e-94 349.7 328 57.0
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 6.4e-94 348.2 330 55.5
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 8.4e-94 347.8 324 57.4
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 8.4e-94 347.8 325 56.6
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 1.1e-93 347.4 293 60.1
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 3.2e-93 345.9 331 55.6
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 5.4e-93 345.1 384 50.0
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 7.1e-93 344.7 324 56.5
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 3.5e-92 342.4 324 56.2
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 6.6e-91 338.2 337 55.2
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 1.9e-90 336.7 321 56.7
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 3.3e-90 335.9 325 56.0
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 3.3e-90 335.9 326 54.6
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 5.6e-90 335.1 323 56.0
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 7.4e-90 334.7 327 54.1
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 6.2e-89 331.6 323 52.6
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 1.1e-88 330.9 302 59.6
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.4e-88 330.5 322 55.3
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 3.4e-87 325.9 211 77.7
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 2.2e-86 323.2 309 57.0
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.5e-82 310.5 247 61.5
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.5e-82 310.5 247 61.1
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 2.5e-82 309.7 249 62.2
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 8.1e-81 304.7 234 64.5
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 2.4e-80 303.1 325 52.3
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 5.1e-75 285.4 304 51.0
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.2e-71 274.2 327 46.8
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.0e-70 271.2 323 48.3
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 6.5e-62 241.9 330 44.5
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.9e-61 240.4 245 50.2
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.8e-56 223.8 177 62.7
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 2.6e-55 219.9 231 56.3
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 1.5e-45 187.6 217 49.8
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.6e-44 183.0 217 49.3
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.7e-44 182.6 217 49.3
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 6.1e-44 182.2 219 50.2
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.4e-43 181.0 244 41.4
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 8.8e-43 178.3 198 52.5
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 2.7e-39 166.8 173 51.4
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 3.1e-32 143.3 160 50.6
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 1.3e-30 137.9 131 51.1
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 2.9e-30 136.7 174 46.0
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.0e-22 111.7 178 41.6
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 7.3e-21 105.5 179 38.5
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 6.8e-19 99.0 57 71.9
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 3.2e-08 63.5 53 60.4


User provided reference genes

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