Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39013 Brassica carinata HOM05D007355 ORTHO05D009343 1.9e-72 275.8 142 100.0
C08p19840 Brassica napus HOM05D007355 ORTHO05D009343 2.1e-71 272.3 142 99.3
BolC8t49623H Brassica oleracea HOM05D007355 ORTHO05D009343 2.1e-71 272.3 142 99.3
A08p29560 Brassica napus HOM05D007355 ORTHO05D009343 2.8e-68 261.9 142 94.4
BraA08t34894Z Brassica rapa HOM05D007355 ORTHO05D009343 2.8e-68 261.9 142 94.4
Sp1g17750 Schrenkiella parvula HOM05D007355 ORTHO05D009343 4.6e-55 218.0 143 79.0
BcaB03g12886 Brassica carinata HOM05D007355 ORTHO05D009343 1.1e-53 213.4 145 79.3
BcaB03g14421 Brassica carinata HOM05D007355 ORTHO05D009343 1.5e-50 203.0 143 76.9
CARHR020450 Cardamine hirsuta HOM05D007355 ORTHO05D009343 4.8e-44 181.4 146 69.2
Carub.0001s1949 Capsella rubella HOM05D007355 ORTHO05D009343 2.6e-37 159.1 126 73.0
Thhalv10009918m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 4.4e-37 158.3 97 82.5
AL1G32690 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 1.1e-27 127.1 98 73.5
BcaB03g14350 Brassica carinata HOM05D007355 ORTHO05D009343 8.3e-20 100.9 78 73.1
AT1G75717 Arabidopsis thaliana HOM05D007355 ORTHO05D009343 9.1e-19 97.4 101 59.4
BcaC08g47049 Brassica carinata HOM05D007355 ORTHO05D009343 2.7e-18 95.9 99 58.6
THA.LOC104814032 Tarenaya hassleriana HOM05D007355 ORTHO05D009343 1.0e-17 94.0 102 53.9
C06p49660 Brassica napus HOM05D007355 ORTHO05D009343 2.3e-17 92.8 99 57.6
BolC6t40005H Brassica oleracea HOM05D007355 ORTHO05D009343 2.3e-17 92.8 99 57.6
AL2G35700 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 5.0e-17 91.7 100 56.0
Lj5g0016063 Lotus japonicus HOM05D007355 ORTHO05D009343 6.5e-17 91.3 111 47.7
A07p41240 Brassica napus HOM05D007355 ORTHO05D009343 1.1e-16 90.5 99 57.6
BraA07t31659Z Brassica rapa HOM05D007355 ORTHO05D009343 1.1e-16 90.5 99 57.6
Gorai.009G194900 Gossypium raimondii HOM05D007355 ORTHO05D009343 7.2e-16 87.8 88 52.3
Thecc.08G043500 Theobroma cacao HOM05D007355 ORTHO05D009343 7.2e-16 87.8 92 54.3
CiPaw.08G065900 Carya illinoinensis HOM05D007355 ORTHO05D009343 9.5e-16 87.4 93 52.7
Ca_13424_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 1.2e-15 87.0 74 67.6
Ca_13425_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 1.2e-15 87.0 74 67.6
Thhalv10019842m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 1.2e-15 87.0 103 57.3
Gohir.A05G186732 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.6e-15 86.7 88 51.1
FAN15G2202 Fragaria x ananassa HOM05D007355 ORTHO05D009343 2.1e-15 86.3 87 57.5
FAN27G0012 Fragaria x ananassa HOM05D007355 ORTHO05D009343 2.1e-15 86.3 87 57.5
Manes.05G148200 Manihot esculenta HOM05D007355 ORTHO05D009343 2.8e-15 85.9 126 44.4
TAR625G0791 Trochodendron aralioides HOM05D007355 ORTHO05D009343 2.8e-15 85.9 93 54.8
BcaC08g45561 Brassica carinata HOM05D007355 ORTHO05D009343 4.7e-15 85.1 99 54.5
FAN20G0162 Fragaria x ananassa HOM05D007355 ORTHO05D009343 6.1e-15 84.7 82 56.1
Gohir.D05G189650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 6.1e-15 84.7 88 51.1
Lalb_Chr22g0354351 Lupinus albus HOM05D007355 ORTHO05D009343 6.1e-15 84.7 88 50.0
Manes.18G014200 Manihot esculenta HOM05D007355 ORTHO05D009343 6.1e-15 84.7 117 44.4
Actinidia37930 Actinidia chinensis HOM05D007355 ORTHO05D009343 8.0e-15 84.3 79 55.7
Lalb_Chr14g0369841 Lupinus albus HOM05D007355 ORTHO05D009343 8.0e-15 84.3 138 40.6
C06p32480 Brassica napus HOM05D007355 ORTHO05D009343 1.0e-14 84.0 99 54.5
BolC6t38371H Brassica oleracea HOM05D007355 ORTHO05D009343 1.0e-14 84.0 99 54.5
Duzib093G0416 Durio zibethinus HOM05D007355 ORTHO05D009343 1.0e-14 84.0 89 51.7
PGR083G2600 Punica granatum HOM05D007355 ORTHO05D009343 1.4e-14 83.6 93 51.6
Sabra05G0184200 Salix brachista HOM05D007355 ORTHO05D009343 3.0e-14 82.4 88 53.4
Ciclev10003277m.g Citrus clementina HOM05D007355 ORTHO05D009343 4.0e-14 82.0 86 52.3
Potri.005G238400 Populus trichocarpa HOM05D007355 ORTHO05D009343 5.2e-14 81.6 88 52.3
COL.COLO4_26156 Corchorus olitorius HOM05D007355 ORTHO05D009343 6.8e-14 81.3 121 44.6
MD15G1013100 Malus domestica HOM05D007355 ORTHO05D009343 6.8e-14 81.3 79 58.2
CARHR069120 Cardamine hirsuta HOM05D007355 ORTHO05D009343 8.9e-14 80.9 96 52.1
BcaB02g07039 Brassica carinata HOM05D007355 ORTHO05D009343 1.5e-13 80.1 76 63.2
ClCG05G018320 Citrullus lanatus HOM05D007355 ORTHO05D009343 1.5e-13 80.1 91 49.5
Carub.0002s2256 Capsella rubella HOM05D007355 ORTHO05D009343 2.0e-13 79.7 99 50.5
Haze_22626 Corylus avellana HOM05D007355 ORTHO05D009343 2.0e-13 79.7 79 60.8
Aa31LG4G5940 Aethionema arabicum HOM05D007355 ORTHO05D009343 2.6e-13 79.3 100 51.0
Prupe.1G366200 Prunus persica HOM05D007355 ORTHO05D009343 3.4e-13 79.0 84 52.4
QL02p011487 Quercus lobata HOM05D007355 ORTHO05D009343 3.4e-13 79.0 111 47.7
Glyma.06G024800 Glycine max HOM05D007355 ORTHO05D009343 4.4e-13 78.6 90 50.0
arahy.Tifrunner.gnm1.ann1.Y2NNQI Arachis hypogaea HOM05D007355 ORTHO05D009343 5.7e-13 78.2 89 53.9
Glyma.04G024700 Glycine max HOM05D007355 ORTHO05D009343 5.7e-13 78.2 90 51.1
Gohir.D06G000500 Gossypium hirsutum HOM05D007355 ORTHO05D009343 5.7e-13 78.2 92 50.0
Gorai.010G004900 Gossypium raimondii HOM05D007355 ORTHO05D009343 5.7e-13 78.2 92 50.0
arahy.Tifrunner.gnm1.ann1.PADY8Y Arachis hypogaea HOM05D007355 ORTHO05D009343 7.5e-13 77.8 90 54.4
CsaV3_3G045820 Cucumis sativus L. HOM05D007355 ORTHO05D009343 9.8e-13 77.4 79 55.7
Solyc04g081380.1 Solanum lycopersicum HOM05D007355 ORTHO05D009343 9.8e-13 77.4 127 40.9
PGSC0003DMG400009860 Solanum tuberosum HOM05D007355 ORTHO05D009343 9.8e-13 77.4 127 41.7
Dinv39511 Davidia involucrata HOM05D007355 ORTHO05D009343 1.3e-12 77.0 80 53.8
Gohir.A06G004700 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.3e-12 77.0 92 48.9
VMungo1309G0669 Vigna mungo HOM05D007355 ORTHO05D009343 1.7e-12 76.6 90 48.9
Cfa013942 Carpinus fangiana HOM05D007355 ORTHO05D009343 3.7e-12 75.5 79 58.2
Lj1g0016145 Lotus japonicus HOM05D007355 ORTHO05D009343 3.7e-12 75.5 83 51.8
Nn5g30158 Nelumbo nucifera HOM05D007355 ORTHO05D009343 4.9e-12 75.1 92 45.7
Phvul.009G016500 Phaseolus vulgaris HOM05D007355 ORTHO05D009343 4.9e-12 75.1 90 47.8
Sed0019478 Sechium edule HOM05D007355 ORTHO05D009343 4.9e-12 75.1 91 49.5
CiPaw.07G150900 Carya illinoinensis HOM05D007355 ORTHO05D009343 8.3e-12 74.3 80 56.2
Gorai.009G270200 Gossypium raimondii HOM05D007355 ORTHO05D009343 1.1e-11 73.9 94 46.8
MELO3C011006.2 Cucumis melo HOM05D007355 ORTHO05D009343 1.4e-11 73.6 130 37.7
TPR.G26402 Trifolium pratense HOM05D007355 ORTHO05D009343 1.4e-11 73.6 110 47.3
CSS0013130 Camellia sinensis var. sinensis HOM05D007355 ORTHO05D009343 1.8e-11 73.2 89 43.8
Gohir.A05G257150 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.8e-11 73.2 94 46.8
Peaxi162Scf00400g00042 Petunia axillaris HOM05D007355 ORTHO05D009343 2.4e-11 72.8 85 52.9
DCAR_017465 Daucus carota HOM05D007355 ORTHO05D009343 3.1e-11 72.4 119 44.5
Gohir.D05G258650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 4.1e-11 72.0 94 46.8
MBI05_g15356_MAGBIO Magnolia biondii HOM05D007355 ORTHO05D009343 4.1e-11 72.0 109 42.2
Nn1g05885 Nelumbo nucifera HOM05D007355 ORTHO05D009343 5.4e-11 71.6 91 47.3
Sc15g0005040 Simmondsia chinensis HOM05D007355 ORTHO05D009343 5.4e-11 71.6 107 41.1
Lsat_1_v5_gn_2_9841 Lactuca sativa HOM05D007355 ORTHO05D009343 1.2e-10 70.5 81 44.4
Cpa.g.sc26.34 Carica papaya HOM05D007355 ORTHO05D009343 1.6e-10 70.1 128 40.6
DCAR_013865 Daucus carota HOM05D007355 ORTHO05D009343 2.7e-10 69.3 94 44.7
Ah.11g039070 Amaranthus hybridus HOM05D007355 ORTHO05D009343 3.5e-10 68.9 77 49.4
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 3.5e-10 68.9 80 47.5
Migut.C00824 Erythranthe guttata HOM05D007355 ORTHO05D009343 7.8e-10 67.8 87 49.4
Sed0024841 Sechium edule HOM05D007355 ORTHO05D009343 7.8e-10 67.8 112 42.0
Medtr1g025150 Medicago truncatula HOM05D007355 ORTHO05D009343 1.0e-09 67.4 73 54.8
CsaV3_2G029470 Cucumis sativus L. HOM05D007355 ORTHO05D009343 2.9e-09 65.9 128 34.4
Rhsim07G0246800 Rhododendron simsii HOM05D007355 ORTHO05D009343 3.8e-09 65.5 76 48.7
Aqoxy5G01778 Aquilegia oxysepala HOM05D007355 ORTHO05D009343 5.0e-09 65.1 92 43.5
ClCG08G014360 Citrullus lanatus HOM05D007355 ORTHO05D009343 8.6e-09 64.3 82 46.3
Eucgr.F01645 Eucalyptus grandis HOM05D007355 ORTHO05D009343 1.1e-08 63.9 77 53.2
SalBow7G4291 Salvia bowleyana HOM05D007355 ORTHO05D009343 1.1e-08 63.9 81 54.3
Hma1.2p1_0638F.1_g193820 Hydrangea macrophylla HOM05D007355 ORTHO05D009343 4.3e-08 62.0 130 36.9
Atru.chr13.303 Acer truncatum HOM05D007355 ORTHO05D009343 2.1e-07 59.7 77 48.1


User provided reference genes

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