Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.1e-153 546.6 274 100.0
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.7e-152 542.0 275 99.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 2.5e-137 492.3 312 83.7
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 9.7e-134 480.3 261 93.1
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 1.1e-126 456.8 260 88.5
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 5.7e-126 454.5 261 88.1
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 2.8e-125 452.2 261 86.6
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 6.3e-125 451.1 261 87.4
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 6.3e-125 451.1 261 85.1
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 2.4e-124 449.1 261 84.7
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 8.5e-122 440.7 261 84.3
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 8.5e-122 440.7 261 84.3
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 8.5e-122 440.7 261 84.3
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 2.5e-121 439.1 262 85.5
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.1e-120 436.0 262 84.7
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 6.7e-119 431.0 261 84.3
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 8.8e-119 430.6 261 83.1
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 2.2e-117 426.0 296 75.0
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 7.0e-108 394.4 261 77.4
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 1.3e-98 363.6 208 88.0
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 9.5e-97 357.5 261 70.1
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 9.5e-97 357.5 261 68.6
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.1e-96 356.3 261 68.2
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 2.1e-96 356.3 261 68.2
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.3e-95 352.8 261 69.3
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 2.3e-95 352.8 261 69.0
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 5.2e-95 351.7 261 67.8
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.3e-93 347.1 261 69.7
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.3e-93 347.1 261 68.6
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.3e-93 347.1 262 69.1
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 2.4e-92 342.8 263 67.7
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 5.4e-92 341.7 262 67.2
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 1.2e-91 340.5 261 67.4
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.6e-91 340.1 262 68.7
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 2.0e-91 339.7 261 67.4
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 5.9e-91 338.2 263 66.9
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 6.6e-90 334.7 223 74.4
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 6.6e-90 334.7 261 66.3
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.1e-89 334.0 221 74.2
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.9e-89 333.2 261 65.9
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.5e-89 332.8 219 74.9
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 3.3e-89 332.4 262 64.9
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.3e-89 332.4 262 65.3
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 4.3e-89 332.0 266 68.4
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 5.6e-89 331.6 262 67.6
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 7.3e-89 331.3 266 68.0
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 7.3e-89 331.3 263 65.4
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 9.5e-89 330.9 216 75.0
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 1.2e-88 330.5 223 72.6
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 1.2e-88 330.5 262 67.9
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.2e-88 330.5 261 65.1
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 3.6e-88 328.9 219 73.5
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 3.6e-88 328.9 223 72.2
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 8.0e-88 327.8 261 65.9
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 8.0e-88 327.8 261 65.9
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 3.0e-87 325.9 235 70.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 3.0e-87 325.9 261 64.0
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 5.2e-87 325.1 206 75.2
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 8.9e-87 324.3 276 63.0
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 8.9e-87 324.3 224 70.1
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.2e-86 323.9 224 71.0
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.5e-86 323.6 261 64.0
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.5e-86 323.6 261 63.6
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.0e-86 323.2 261 65.1
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 4.4e-86 322.0 221 71.5
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 4.4e-86 322.0 263 65.0
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 4.4e-86 322.0 216 74.1
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 7.5e-86 321.2 263 66.2
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.7e-85 320.1 282 61.7
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.7e-85 320.1 263 63.9
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 2.2e-85 319.7 263 63.5
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 2.9e-85 319.3 226 72.1
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 3.7e-85 318.9 221 71.0
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 3.7e-85 318.9 210 75.7
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.7e-85 318.9 261 63.2
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.7e-85 318.9 197 77.7
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 4.9e-85 318.5 205 78.0
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 4.9e-85 318.5 199 78.9
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 6.4e-85 318.2 232 67.7
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 6.4e-85 318.2 296 59.1
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 6.4e-85 318.2 216 73.6
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 6.4e-85 318.2 219 72.1
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 8.3e-85 317.8 286 62.6
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.1e-84 317.4 263 63.1
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.8e-84 316.6 268 62.7
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 2.4e-84 316.2 210 75.7
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 4.1e-84 315.5 264 64.8
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 4.1e-84 315.5 261 61.3
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 4.1e-84 315.5 221 70.6
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 4.1e-84 315.5 199 77.9
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.0e-84 314.7 261 62.8
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 7.0e-84 314.7 199 77.9
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 9.2e-84 314.3 219 71.7
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 9.2e-84 314.3 261 64.0
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 1.2e-83 313.9 263 64.3
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.7e-83 312.8 221 70.1
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 2.7e-83 312.8 239 68.2
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 5.9e-83 311.6 258 61.2
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.3e-82 310.5 210 73.3
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 8.6e-82 307.8 199 75.9
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 1.6e-80 303.5 209 71.8
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.1e-79 300.8 229 66.4
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.5e-78 297.0 202 72.3
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.5e-78 297.0 331 51.4
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 7.5e-78 294.7 224 67.0
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 9.8e-78 294.3 210 69.0
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 2.2e-77 293.1 185 77.8
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.9e-77 292.7 224 65.6
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 8.3e-77 291.2 214 68.2
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 1.4e-76 290.4 199 72.9
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.6e-75 287.0 264 59.5
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.0e-75 286.6 209 66.5
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 2.7e-75 286.2 237 62.0
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 3.9e-74 282.3 210 67.1
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 5.0e-74 282.0 261 58.2
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 8.1e-72 274.6 190 68.9
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.3e-69 267.3 261 57.5
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.7e-69 266.9 211 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.2e-69 266.5 194 68.0
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.9e-69 266.2 167 77.2
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 6.4e-69 265.0 192 65.6
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.2e-67 260.8 185 69.2
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.2e-59 234.2 216 58.8
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.9e-57 226.9 429 36.1
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.6e-56 223.8 200 59.0
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 3.6e-56 222.6 189 57.7
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.1e-52 211.1 212 49.5
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 2.4e-52 209.9 264 49.6
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.1e-47 194.5 178 53.9
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.1e-47 194.5 178 53.9
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 4.0e-47 192.6 135 65.9
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.0e-42 176.4 239 40.6
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.9e-41 173.7 162 56.2
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.9e-41 173.7 106 80.2
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 7.4e-41 171.8 203 43.3
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 9.0e-39 164.9 200 43.5
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 2.2e-37 160.2 106 73.6
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.1e-36 155.2 98 74.5
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 9.3e-36 154.8 125 62.4
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.7e-35 153.3 97 78.4
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.6e-33 145.6 97 76.3
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 5.3e-31 139.0 93 73.1
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 6.5e-29 132.1 81 76.5
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.1e-25 121.3 107 61.7
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.1e-23 112.8 156 43.6
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 6.9e-23 112.1 76 75.0
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 2.5e-20 103.6 74 64.9
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 2.5e-20 103.6 116 51.7
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 2.1e-19 100.5 67 71.6
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 5.1e-18 95.9 79 65.8
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.4e-15 87.8 77 55.8
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.2e-08 63.9 176 33.0


User provided reference genes

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