Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 8.0e-129 463.8 233 100.0
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.3e-59 233.8 246 54.9
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 1.3e-59 233.8 237 57.0
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 3.9e-59 232.3 237 55.7
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 5.1e-59 231.9 245 55.1
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.1e-58 230.7 248 54.8
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 1.5e-58 230.3 237 56.5
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.5e-58 230.3 441 39.0
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 7.4e-58 228.0 237 55.3
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 9.6e-58 227.6 246 54.1
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.4e-56 223.8 245 53.5
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 3.1e-56 222.6 201 61.2
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 2.1e-52 209.9 245 51.8
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.3e-51 207.2 245 51.4
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 5.6e-50 201.8 231 50.2
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 9.6e-50 201.1 247 48.2
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 2.1e-49 199.9 229 49.8
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 3.7e-49 199.1 241 48.5
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 6.2e-49 198.4 249 47.8
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.1e-48 197.6 241 48.5
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 1.5e-47 193.7 237 48.5
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.5e-47 193.7 241 47.3
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 7.6e-47 191.4 300 42.3
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.3e-46 190.7 277 44.8
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.3e-46 190.7 231 48.5
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.2e-46 189.9 277 44.4
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 6.5e-46 188.3 238 48.3
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 6.5e-46 188.3 237 47.7
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 8.4e-46 188.0 278 43.5
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.1e-45 187.6 239 46.9
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.9e-45 186.8 201 53.2
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 2.5e-45 186.4 237 47.7
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 2.5e-45 186.4 237 47.7
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 2.5e-45 186.4 238 46.2
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 3.2e-45 186.0 246 45.9
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 3.2e-45 186.0 245 45.7
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 4.2e-45 185.7 245 46.1
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 4.2e-45 185.7 237 46.4
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 4.2e-45 185.7 243 46.1
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 5.5e-45 185.3 201 53.7
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 7.1e-45 184.9 239 46.0
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 7.1e-45 184.9 237 46.0
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 1.2e-44 184.1 134 73.1
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.2e-44 184.1 237 45.6
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 1.6e-44 183.7 237 46.4
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 1.6e-44 183.7 239 45.6
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 2.1e-44 183.3 243 44.4
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 2.1e-44 183.3 237 45.6
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 2.7e-44 183.0 239 45.6
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 2.7e-44 183.0 238 46.2
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 3.5e-44 182.6 238 46.2
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 3.5e-44 182.6 238 46.2
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.6e-44 182.2 230 47.8
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 4.6e-44 182.2 253 45.1
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.0e-43 181.0 239 46.4
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 1.0e-43 181.0 236 45.8
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 1.8e-43 180.3 246 44.7
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 5.1e-43 178.7 238 46.2
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 5.1e-43 178.7 241 45.2
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 5.1e-43 178.7 237 44.3
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 6.7e-43 178.3 247 43.7
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 6.7e-43 178.3 237 44.7
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 8.7e-43 177.9 237 45.6
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 1.9e-42 176.8 253 43.9
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 2.5e-42 176.4 237 45.1
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 2.5e-42 176.4 241 44.0
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 2.5e-42 176.4 241 44.0
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 2.5e-42 176.4 241 44.0
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 2.5e-42 176.4 237 45.1
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 2.5e-42 176.4 237 45.6
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 3.3e-42 176.0 237 45.1
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 5.7e-42 175.3 237 45.6
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 7.4e-42 174.9 236 44.9
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 7.4e-42 174.9 240 43.8
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 9.7e-42 174.5 249 45.0
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 1.3e-41 174.1 238 45.0
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 1.3e-41 174.1 237 45.1
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.6e-41 173.7 210 49.5
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 3.7e-41 172.6 237 45.1
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 4.8e-41 172.2 265 40.8
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 4.8e-41 172.2 301 39.2
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 6.3e-41 171.8 250 44.0
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 6.3e-41 171.8 237 45.1
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 6.3e-41 171.8 237 45.1
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 6.3e-41 171.8 278 41.0
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 6.3e-41 171.8 278 40.3
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 8.2e-41 171.4 240 43.3
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.1e-40 171.0 237 43.9
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.4e-40 170.6 237 43.9
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.8e-40 170.2 237 44.7
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 3.1e-40 169.5 259 43.6
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 4.1e-40 169.1 248 42.7
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 3.4e-39 166.0 142 62.7
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 4.5e-39 165.6 238 43.3
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 1.3e-38 164.1 281 38.4
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.9e-38 162.9 237 42.6
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 2.9e-38 162.9 143 62.9
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 6.5e-38 161.8 237 43.0
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.9e-37 160.2 289 38.1
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 2.5e-37 159.8 288 38.5
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 5.5e-37 158.7 142 59.9
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 2.7e-36 156.4 223 44.4
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 2.3e-35 153.3 145 57.2
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.3e-35 153.3 145 58.6
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.1e-34 151.0 212 45.3
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.5e-34 150.6 190 48.4
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.9e-34 150.2 138 60.1
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 1.4e-32 144.1 232 42.7
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 1.7e-30 137.1 236 38.6
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 4.4e-26 122.5 79 74.7
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 2.8e-25 119.8 57 96.5
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 3.2e-21 106.3 235 35.7
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 2.0e-18 97.1 233 33.9
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 2.2e-17 93.6 46 95.7
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 2.8e-17 93.2 235 32.3
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 4.1e-16 89.4 51 78.4
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.1e-16 88.2 53 75.5
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 1.0e-11 74.7 234 29.1
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 1.4e-11 74.3 259 27.8
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 3.0e-11 73.2 106 44.3
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 3.0e-11 73.2 129 35.7
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 3.3e-10 69.7 37 86.5
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.7e-09 66.2 129 33.3
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 4.8e-09 65.9 62 61.3
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.2e-07 61.2 37 70.3
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.2e-07 61.2 37 70.3
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.2e-07 61.2 37 70.3
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 3.5e-07 59.7 43 60.5
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 4.5e-07 59.3 47 57.4
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 5.9e-07 58.9 37 67.6
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 1.3e-06 57.8 37 67.6
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.2e-06 57.0 36 69.4


User provided reference genes

Program Settings