Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38816 Brassica carinata HOM05D004685 ORTHO05D005412 1.4e-57 226.1 114 100.0
A04p23420 Brassica napus HOM05D004685 ORTHO05D005412 3.7e-47 191.4 101 97.0
C04p59720 Brassica napus HOM05D004685 ORTHO05D005412 3.7e-47 191.4 101 97.0
BolC4t27480H Brassica oleracea HOM05D002568 ORTHO05D005412 2.4e-46 188.7 101 96.0
BraA04t17869Z Brassica rapa HOM05D004685 ORTHO05D005412 9.2e-46 186.8 101 95.0
Sp4g13230 Schrenkiella parvula HOM05D004685 ORTHO05D005412 8.9e-41 170.2 101 87.1
Carub.0004s1189 Capsella rubella HOM05D004685 ORTHO05D005412 2.0e-40 169.1 101 87.1
Thhalv10016666m.g Eutrema salsugineum HOM05D004685 ORTHO05D005412 3.4e-40 168.3 101 86.1
AL4G25610 Arabidopsis lyrata HOM05D004685 ORTHO05D005412 7.5e-40 167.2 101 86.1
AT2G30710 Arabidopsis thaliana HOM05D004685 ORTHO05D005412 4.9e-39 164.5 101 85.1
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 2.3e-36 155.6 101 82.2
BcaC01g06012 Brassica carinata HOM05D004685 ORTHO05D005412 1.1e-35 153.3 100 78.0
C03p20270 Brassica napus HOM05D004685 ORTHO05D005412 3.6e-34 148.3 102 76.5
THA.LOC104815520 Tarenaya hassleriana HOM05D004685 ORTHO05D005412 7.6e-32 140.6 101 70.3
A03p17170 Brassica napus HOM05D004685 ORTHO05D005412 2.9e-31 138.7 102 74.5
BraA03t10991Z Brassica rapa HOM05D001857 ORTHO05D006687 5.4e-30 134.4 102 73.5
BolC3t14402H Brassica oleracea HOM05D004685 ORTHO05D005412 1.7e-28 129.4 94 74.5
TWI63G0381 Tripterygium wilfordii HOM05D004685 ORTHO05D005412 1.7e-23 112.8 100 61.0
Cpa.g.sc9.333 Carica papaya HOM05D004685 ORTHO05D005412 3.2e-22 108.6 101 54.5
TWI38G2236 Tripterygium wilfordii HOM05D004685 ORTHO05D005412 4.2e-22 108.2 100 59.0
Cfa015223 Carpinus fangiana HOM05D004685 ORTHO05D005412 7.1e-22 107.5 100 54.0
Manes.11G127300 Manihot esculenta HOM05D004685 ORTHO05D005412 7.1e-22 107.5 104 55.8
Haze_01415 Corylus avellana HOM05D004685 ORTHO05D005412 1.6e-21 106.3 100 55.0
PGR014G0004 Punica granatum HOM05D004685 ORTHO05D005412 2.1e-21 105.9 101 56.4
PGR083G2412 Punica granatum HOM05D004685 ORTHO05D005412 2.1e-21 105.9 101 56.4
BcaB01g04083 Brassica carinata HOM05D004685 ORTHO05D005412 3.0e-20 102.1 81 70.4
QL10p052572 Quercus lobata HOM05D004685 ORTHO05D005412 3.0e-20 102.1 101 54.5
Sabra07G0108900 Salix brachista HOM05D004685 ORTHO05D005412 3.9e-20 101.7 105 57.1
Ciclev10024547m.g Citrus clementina HOM05D004685 ORTHO05D005412 1.5e-19 99.8 104 54.8
COL.COLO4_28386 Corchorus olitorius HOM05D004685 ORTHO05D005412 1.9e-19 99.4 100 53.0
Prupe.4G179600 Prunus persica HOM05D004685 ORTHO05D005412 2.5e-19 99.0 107 52.3
CANSAT54G0526 Cannabis sativa HOM05D004685 ORTHO05D005412 4.3e-19 98.2 100 54.0
Prupe.1G201500 Prunus persica HOM05D004685 ORTHO05D005412 4.3e-19 98.2 100 52.0
MD03G1229700 Malus domestica HOM05D004685 ORTHO05D005412 5.6e-19 97.8 104 53.8
MD11G1250200 Malus domestica HOM05D004685 ORTHO05D005412 5.6e-19 97.8 104 52.9
Manes.04G048500 Manihot esculenta HOM05D004685 ORTHO05D005412 5.6e-19 97.8 104 53.8
TPR.G6599 Trifolium pratense HOM05D004685 ORTHO05D005412 7.3e-19 97.4 100 54.0
Gohir.A02G092700 Gossypium hirsutum HOM05D004685 ORTHO05D005412 9.6e-19 97.1 100 53.0
Medtr4g068180 Medicago truncatula HOM05D004685 ORTHO05D005412 9.6e-19 97.1 100 53.0
Medtr2g099380 Medicago truncatula HOM05D004685 ORTHO05D005412 1.3e-18 96.7 100 53.0
GSVIVG01038095001 Vitis vinifera HOM05D004685 ORTHO05D005412 1.6e-18 96.3 100 51.0
Gohir.D02G110800 Gossypium hirsutum HOM05D004685 ORTHO05D005412 2.1e-18 95.9 100 52.0
Potri.007G134200 Populus trichocarpa HOM05D004685 ORTHO05D005412 2.1e-18 95.9 101 53.5
RcHm_v2.0_Chr5g0033161 Rosa chinensis HOM05D004685 ORTHO05D005412 3.6e-18 95.1 100 54.0
Nn1g09723 Nelumbo nucifera HOM05D004685 ORTHO05D005412 4.8e-18 94.7 100 52.0
Ca_01238_v3 Cicer arietinum L. HOM05D004685 ORTHO05D005412 6.2e-18 94.4 100 54.0
Gorai.005G125700 Gossypium raimondii HOM05D004685 ORTHO05D005412 8.1e-18 94.0 100 51.0
MD04G1046900 Malus domestica HOM05D004685 ORTHO05D005412 8.1e-18 94.0 100 51.0
MELO3C017779.2 Cucumis melo HOM05D004685 ORTHO05D005412 1.4e-17 93.2 110 46.4
Dinv05093 Davidia involucrata HOM05D004685 ORTHO05D005412 1.4e-17 93.2 89 57.3
Duzib212G0895 Durio zibethinus HOM05D004685 ORTHO05D005412 1.4e-17 93.2 100 51.0
CAN.G31.7 Capsicum annuum HOM05D004685 ORTHO05D005412 1.8e-17 92.8 101 47.5
Lalb_Chr14g0372611 Lupinus albus HOM05D004685 ORTHO05D005412 1.8e-17 92.8 101 50.5
Phvul.005G155500 Phaseolus vulgaris HOM05D004685 ORTHO05D005412 1.8e-17 92.8 100 50.0
Thecc.04G171300 Theobroma cacao HOM05D004685 ORTHO05D005412 2.4e-17 92.4 100 51.0
Lj3g0020450 Lotus japonicus HOM05D004685 ORTHO05D005412 3.1e-17 92.0 100 54.0
Phvul.011G051800 Phaseolus vulgaris HOM05D004685 ORTHO05D005412 3.1e-17 92.0 100 51.0
FAN25G3192 Fragaria x ananassa HOM05D004685 ORTHO05D005412 4.0e-17 91.7 100 53.0
Lj3A151G15 Lonicera japonica HOM05D004685 ORTHO05D005412 5.3e-17 91.3 100 48.0
ClCG07G015070 Citrullus lanatus HOM05D004685 ORTHO05D005412 6.9e-17 90.9 101 48.5
Gohir.D10G125600 Gossypium hirsutum HOM05D004685 ORTHO05D005412 6.9e-17 90.9 100 49.0
Gorai.011G138600 Gossypium raimondii HOM05D004685 ORTHO05D005412 6.9e-17 90.9 100 49.0
CsaV3_4G002620 Cucumis sativus L. HOM05D004685 ORTHO05D005412 9.0e-17 90.5 100 49.0
FAN11G3422 Fragaria x ananassa HOM05D004685 ORTHO05D005412 9.0e-17 90.5 100 53.0
Rhsim09G0013500 Rhododendron simsii HOM05D004685 ORTHO05D005412 9.0e-17 90.5 100 51.0
Gohir.A10G141300 Gossypium hirsutum HOM05D004685 ORTHO05D005412 1.2e-16 90.1 100 49.0
Psat7g208360 Pisum sativum HOM05D004685 ORTHO05D005412 1.2e-16 90.1 102 50.0
CiPaw.01G173200 Carya illinoinensis HOM05D004685 ORTHO05D005412 1.5e-16 89.7 100 51.0
VMungo1127G1426 Vigna mungo HOM05D004685 ORTHO05D005412 1.5e-16 89.7 100 51.0
Cc03_g11850 Coffea canephora HOM05D004685 ORTHO05D005412 2.0e-16 89.4 101 47.5
FAN21G0673 Fragaria x ananassa HOM05D004685 ORTHO05D005412 2.6e-16 89.0 100 52.0
Glyma.15G027700 Glycine max HOM05D004685 ORTHO05D005412 2.6e-16 89.0 100 49.0
Sed0003070 Sechium edule HOM05D004685 ORTHO05D005412 2.6e-16 89.0 109 45.9
CiPaw.02G103100 Carya illinoinensis HOM05D004685 ORTHO05D005412 5.8e-16 87.8 59 71.2
Eucgr.A00035 Eucalyptus grandis HOM05D004685 ORTHO05D005412 5.8e-16 87.8 102 53.9
FAN16G2549 Fragaria x ananassa HOM05D004685 ORTHO05D005412 5.8e-16 87.8 78 60.3
MBI07_g02901_MAGBIO Magnolia biondii HOM05D004685 ORTHO05D005412 5.8e-16 87.8 99 49.5
Solyc11g005010.3 Solanum lycopersicum HOM05D004685 ORTHO05D005412 5.8e-16 87.8 101 44.6
Sopen11g001030 Solanum pennellii HOM05D004685 ORTHO05D005412 5.8e-16 87.8 101 44.6
HanXRQChr14g0433711 Helianthus annuus HOM05D004685 ORTHO05D005412 7.6e-16 87.4 100 49.0
Oeu015936.3 Olea europaea HOM05D004685 ORTHO05D005412 7.6e-16 87.4 103 46.6
CSS0040744 Camellia sinensis var. sinensis HOM05D004685 ORTHO05D005412 9.9e-16 87.0 100 49.0
Glyma.13G346500 Glycine max HOM05D004685 ORTHO05D005412 1.7e-15 86.3 100 47.0
VMungo1080G1803 Vigna mungo HOM05D004685 ORTHO05D005412 1.7e-15 86.3 87 51.7
Glyma.12G049600 Glycine max HOM05D004685 ORTHO05D005412 2.2e-15 85.9 100 50.0
TPR.G34220 Trifolium pratense HOM05D004685 ORTHO05D005412 2.2e-15 85.9 102 49.0
HPP92_012799 Vanilla planifolia HOM05D004685 ORTHO05D005412 2.2e-15 85.9 99 47.5
arahy.Tifrunner.gnm1.ann1.D04CBC Arachis hypogaea HOM05D004685 ORTHO05D005412 2.9e-15 85.5 98 48.0
Duzib268G0117 Durio zibethinus HOM05D004685 ORTHO05D005412 3.8e-15 85.1 100 46.0
Lsat_1_v5_gn_3_111900 Lactuca sativa HOM05D004685 ORTHO05D005412 3.8e-15 85.1 106 47.2
Nitab4.5_0004047g0070 Nicotiana tabacum HOM05D004685 ORTHO05D005412 3.8e-15 85.1 99 43.4
arahy.Tifrunner.gnm1.ann1.YPS1PN Arachis hypogaea HOM05D004685 ORTHO05D005412 4.9e-15 84.7 98 48.0
Glyma.11G125000 Glycine max HOM05D004685 ORTHO05D005412 4.9e-15 84.7 100 49.0
Ca_20808_v3 Cicer arietinum L. HOM05D004685 ORTHO05D005412 6.4e-15 84.3 102 49.0
Actinidia34572 Actinidia chinensis HOM05D004685 ORTHO05D005412 1.1e-14 83.6 100 45.0
Lsat_1_v5_gn_3_104860 Lactuca sativa HOM05D004685 ORTHO05D005412 1.9e-14 82.8 93 50.5
Lalb_Chr22g0352021 Lupinus albus HOM05D004685 ORTHO05D005412 1.9e-14 82.8 101 48.5
Sc13g0007990 Simmondsia chinensis HOM05D004685 ORTHO05D005412 2.4e-14 82.4 100 46.0
Sed0022333 Sechium edule HOM05D004685 ORTHO05D005412 3.2e-14 82.0 90 50.0
Hund12396 Selenicereus undatus HOM05D004685 ORTHO05D005412 4.2e-14 81.6 100 45.0
Atru.chr4.1348 Acer truncatum HOM05D004685 ORTHO05D005412 7.1e-14 80.9 104 45.2
arahy.Tifrunner.gnm1.ann1.H82CQV Arachis hypogaea HOM05D004685 ORTHO05D005412 9.3e-14 80.5 101 51.5
ECA240G0670 Erigeron canadensis HOM05D004685 ORTHO05D005412 9.3e-14 80.5 100 44.0
MSTRG.24569 Avicennia marina HOM05D004685 ORTHO05D005412 1.2e-13 80.1 93 44.1
PSO017G4600 Papaver somniferum HOM05D004685 ORTHO05D005412 1.2e-13 80.1 107 43.9
Psat5g291640 Pisum sativum HOM05D004685 ORTHO05D005412 1.2e-13 80.1 68 57.4
DCAR_005442 Daucus carota HOM05D004685 ORTHO05D005412 1.6e-13 79.7 100 46.0
Peaxi162Scf00126g00812 Petunia axillaris HOM05D004685 ORTHO05D005412 1.6e-13 79.7 101 41.6
arahy.Tifrunner.gnm1.ann1.0IGH5Q Arachis hypogaea HOM05D004685 ORTHO05D005412 2.1e-13 79.3 101 51.5
Duzib151G0372 Durio zibethinus HOM05D004685 ORTHO05D005412 2.1e-13 79.3 100 46.0
Migut.N03084 Erythranthe guttata HOM05D004685 ORTHO05D005412 2.1e-13 79.3 100 43.0
Nn7g37611 Nelumbo nucifera HOM05D004685 ORTHO05D005412 2.1e-13 79.3 89 51.7
PSO675G3484 Papaver somniferum HOM05D004685 ORTHO05D005412 7.9e-13 77.4 83 50.6
Lalb_Chr24g0396631 Lupinus albus HOM05D004685 ORTHO05D005412 1.0e-12 77.0 101 46.5
EL10Ac3g06030 Beta vulgaris HOM05D004685 ORTHO05D005412 1.3e-12 76.6 104 50.0
AUR62002365 Chenopodium quinoa HOM05D004685 ORTHO05D005412 3.9e-12 75.1 100 46.0
Os09g0515800 Oryza sativa ssp. japonica HOM05D004685 ORTHO05D005412 5.1e-12 74.7 99 43.4
Aqoxy2G04150 Aquilegia oxysepala HOM05D004685 ORTHO05D005412 6.7e-12 74.3 100 44.0
AUR62023820 Chenopodium quinoa HOM05D004685 ORTHO05D005412 8.7e-12 73.9 100 45.0
SalBow6G3785 Salvia bowleyana HOM05D004685 ORTHO05D005412 1.1e-11 73.6 99 41.4
Dinv44167 Davidia involucrata HOM05D004685 ORTHO05D005412 1.5e-11 73.2 47 74.5
FvH4_3g19760 Fragaria vesca HOM05D004685 ORTHO05D005412 2.5e-11 72.4 37 89.2
CDE04G1604 Ceratophyllum demersum HOM05D004685 ORTHO05D005412 7.4e-11 70.9 57 59.6
MBI11_g23943_MAGBIO Magnolia biondii HOM05D004685 ORTHO05D005412 1.3e-10 70.1 73 50.7
SalBow2G2136 Salvia bowleyana HOM05D004685 ORTHO05D005412 1.3e-10 70.1 102 44.1
Zm00001eb191360 Zea mays HOM05D004685 ORTHO05D005412 1.3e-10 70.1 83 48.2
Hund03187 Selenicereus undatus HOM05D004685 ORTHO05D005412 1.6e-10 69.7 79 50.6
ATR0743G201 Amborella trichopoda HOM05D004685 ORTHO05D005412 2.1e-10 69.3 100 43.0
AagrBONN_evm.TU.Sc2ySwM_362.1685 Anthoceros agrestis HOM05D004685 ORTHO05D005412 5.3e-09 64.7 47 68.1
Pp3c9_25750 Physcomitrium patens HOM05D004685 ORTHO05D005412 5.3e-09 64.7 47 59.6
TAR362G0066 Trochodendron aralioides HOM05D004685 ORTHO05D005412 9.0e-09 63.9 40 77.5
unitig_578.g16717 Utricularia gibba HOM05D004685 ORTHO05D005412 1.5e-08 63.2 109 37.6
SGA_v2.0_scaffold25G10992 Striga asiatica HOM05D004685 ORTHO05D005412 2.0e-08 62.8 75 45.3
Migut.G01286 Erythranthe guttata HOM05D004685 ORTHO05D005412 3.4e-08 62.0 89 41.6
VMungo1080G0053 Vigna mungo HOM05D003244 ORTHO05D003645 1.7e-07 59.7 86 41.9
SMO146G0212 Selaginella moellendorffii HOM05D004685 ORTHO05D005412 3.8e-07 58.5 96 42.7
Mapoly0111s0053 Marchantia polymorpha HOM05D004685 ORTHO05D005412 6.4e-07 57.8 99 41.4
CBR_g39554 Chara braunii HOM05D004685 ORTHO05D005412 2.4e-06 55.8 47 53.2
Cre12.g486400 Chlamydomonas reinhardtii HOM05D004685 ORTHO05D005412 4.2e-06 55.1 39 64.1


User provided reference genes

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