Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 3.4e-147 525.0 270 100.0
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 2.8e-141 505.4 269 96.7
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 8.9e-140 500.4 269 95.5
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 2.2e-138 495.7 268 91.8
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 3.7e-138 495.0 268 93.7
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 5.4e-137 491.1 271 90.8
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 4.9e-130 468.0 277 88.1
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 9.2e-129 463.8 276 84.1
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 7.3e-126 454.1 277 83.4
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 2.8e-125 452.2 275 82.9
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 8.1e-125 450.7 275 85.1
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 1.9e-118 429.5 322 70.2
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 1.6e-112 409.8 274 79.6
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 8.1e-101 370.9 227 82.4
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 1.4e-100 370.2 217 91.2
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 2.4e-100 369.4 271 69.0
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 1.2e-99 367.1 270 68.1
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 1.2e-99 367.1 271 68.6
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 1.5e-99 366.7 281 68.0
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 3.4e-99 365.5 272 67.3
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.5e-99 365.2 267 68.2
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.5e-99 365.2 267 68.2
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 5.8e-99 364.8 267 67.8
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 7.6e-99 364.4 281 68.3
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 7.6e-99 364.4 268 68.3
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 2.9e-98 362.5 272 68.4
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 3.8e-98 362.1 270 72.2
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.5e-97 359.4 267 67.8
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.2e-97 359.0 267 67.8
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 3.2e-97 359.0 277 66.8
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 6.0e-96 354.8 280 65.0
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 1.8e-95 353.2 277 65.3
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 5.1e-95 351.7 282 64.2
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 5.1e-95 351.7 269 66.9
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 5.1e-95 351.7 280 65.0
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 6.7e-95 351.3 283 64.0
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 6.7e-95 351.3 270 71.1
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 1.5e-94 350.1 280 68.6
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 1.9e-94 349.7 267 65.9
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 7.4e-94 347.8 269 67.3
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 7.4e-94 347.8 273 64.1
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 4.8e-93 345.1 280 62.9
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 4.8e-93 345.1 274 63.5
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 4.8e-93 345.1 276 65.9
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 1.1e-92 344.0 296 62.2
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 3.1e-92 342.4 265 66.0
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 3.1e-92 342.4 280 62.9
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 6.9e-92 341.3 274 68.2
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 4.5e-91 338.6 274 66.8
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 4.5e-91 338.6 274 66.8
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 1.1e-89 334.0 255 67.5
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 1.9e-89 333.2 274 67.2
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 1.9e-89 333.2 264 65.9
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.2e-89 332.4 271 63.8
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 4.2e-89 332.0 269 62.8
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 5.5e-89 331.6 268 61.9
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 5.5e-89 331.6 274 62.4
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 2.1e-88 329.7 268 66.8
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 7.9e-88 327.8 271 64.6
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 1.3e-87 327.0 275 60.4
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 2.3e-87 326.2 256 66.8
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.7e-85 318.9 267 62.9
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 3.7e-85 318.9 268 61.6
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.3e-85 318.2 267 62.9
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 8.2e-85 317.8 270 59.6
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 1.1e-84 317.4 276 60.5
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 3.2e-81 305.8 271 57.9
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 9.4e-81 304.3 282 60.3
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 1.0e-79 300.8 287 61.3
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 2.3e-79 299.7 283 60.4
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.7e-79 298.1 267 58.8
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 2.0e-78 296.6 302 54.6
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 1.7e-77 293.5 269 57.6
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 1.4e-76 290.4 244 63.1
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 8.5e-74 281.2 267 57.3
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 1.4e-71 273.9 222 63.5
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.9e-71 272.3 219 65.8
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 9.1e-68 261.2 273 52.4
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 4.2e-65 252.3 271 51.3
Zm00001eb328020 Zea mays HOM05D007396 ORTHO05D009228 4.2e-65 252.3 237 55.7
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 3.6e-64 249.2 260 57.7
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.0e-62 243.4 272 51.1
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 5.3e-60 235.3 269 49.1
Haze_16206 Corylus avellana HOM05D007396 ORTHO05D009228 3.5e-59 232.6 161 68.3
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 7.7e-59 231.5 176 64.8
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 1.0e-58 231.1 270 51.5
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 5.0e-58 228.8 162 66.7
Eucgr.E02162 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.0e-55 219.5 264 48.5
Actinidia31122 Actinidia chinensis HOM05D007396 ORTHO05D009228 2.0e-54 216.9 163 65.6
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.0e-54 216.9 267 50.6
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 4.5e-51 205.7 315 39.4
Eucgr.E02284 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.9e-51 205.3 267 47.2
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 1.9e-49 200.3 163 62.0
Eucgr.E02217 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.8e-44 183.7 140 62.9
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 3.1e-44 183.0 264 40.5
MELO3C032656.2 Cucumis melo HOM05D007396 ORTHO05D009228 2.8e-40 169.9 128 64.1
Thecc.06G054000 Theobroma cacao HOM05D007396 ORTHO05D009228 1.4e-39 167.5 126 65.9
Eucgr.E02226 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.0e-39 166.0 131 62.6
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 4.4e-38 162.5 117 76.1
CSS0029409 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 4.1e-36 156.0 129 60.5
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 3.5e-35 152.9 170 46.5
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 1.6e-32 144.1 126 57.9
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 2.1e-32 143.7 144 54.9
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 7.5e-30 135.2 241 37.3
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 5.4e-28 129.0 97 73.2
Medtr2g105710 Medicago truncatula HOM05D007396 ORTHO05D009228 3.2e-20 103.2 69 72.5
Actinidia31121 Actinidia chinensis HOM05D007396 ORTHO05D009228 4.6e-19 99.4 69 71.0
BcaC05g25535 Brassica carinata HOM05D007396 ORTHO05D009228 4.0e-15 86.3 47 93.6
Sabra14G0002100 Salix brachista HOM05D007396 ORTHO05D009228 1.6e-11 74.3 87 44.8
Cre07.g325721 Chlamydomonas reinhardtii HOM05D007396 ORTHO05D009228 3.5e-11 73.2 319 26.3
SEGI_36165 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 3.9e-10 69.7 41 75.6
SEGI_21917 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 2.8e-08 63.5 40 70.0


User provided reference genes

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