Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 1.9e-133 479.2 245 100.0
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 1.9e-133 479.2 245 100.0
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 1.9e-133 479.2 245 100.0
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 1.8e-118 429.5 245 91.8
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 1.9e-117 426.0 247 91.1
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 1.1e-115 420.2 245 90.2
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 6.3e-100 367.9 247 81.0
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 4.5e-98 361.7 247 80.2
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 4.2e-96 355.1 248 79.0
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 2.7e-95 352.4 247 78.1
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.3e-94 350.1 251 77.7
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 4.3e-93 345.1 251 77.7
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 6.3e-92 341.3 248 77.0
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 6.3e-92 341.3 248 77.0
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 5.2e-78 295.0 250 71.2
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 1.1e-75 287.3 253 69.2
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.0e-70 270.8 248 67.3
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 8.8e-70 267.7 274 61.7
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.3e-57 227.3 244 57.4
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 2.1e-55 219.9 269 54.3
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 4.7e-55 218.8 261 55.6
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 1.2e-47 194.1 171 64.3
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 3.0e-46 189.5 270 50.7
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 4.3e-32 142.5 235 39.6
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 1.6e-31 140.6 159 49.7
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 8.1e-31 138.3 222 44.1
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 1.1e-30 137.9 217 41.5
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 6.8e-30 135.2 191 47.6
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 1.2e-29 134.4 202 44.1
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 2.6e-29 133.3 211 43.1
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 2.6e-29 133.3 226 38.9
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 2.9e-28 129.8 183 43.2
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 4.9e-28 129.0 244 40.2
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 4.9e-28 129.0 212 42.5
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 6.4e-28 128.6 152 46.1
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 1.4e-27 127.5 184 43.5
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 1.9e-27 127.1 168 45.8
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.4e-27 126.7 183 42.6
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 3.2e-27 126.3 222 37.8
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.4e-27 125.6 253 38.3
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 7.1e-27 125.2 206 40.3
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 9.2e-27 124.8 221 37.6
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 1.2e-26 124.4 196 43.9
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 2.7e-26 123.2 187 43.3
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 2.7e-26 123.2 219 39.7
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.5e-26 122.9 242 36.8
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.3e-25 120.2 167 44.3
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.3e-25 120.2 167 44.3
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 3.0e-25 119.8 232 36.6
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 3.0e-25 119.8 235 39.1
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 8.6e-25 118.2 140 49.3
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 8.6e-25 118.2 226 42.0
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 7.3e-24 115.2 228 39.5
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.6e-23 114.0 202 39.1
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 2.8e-23 113.2 191 38.7
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 4.7e-23 112.5 243 35.8
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 8.1e-23 111.7 192 38.0
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 8.1e-23 111.7 214 36.9
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 8.1e-23 111.7 204 36.3
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.4e-22 110.9 238 37.8
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 1.8e-22 110.5 220 38.2
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 1.5e-21 107.5 167 38.9
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 1.5e-21 107.5 252 35.7
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 2.0e-21 107.1 164 40.9
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 2.0e-21 107.1 155 41.9
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 2.6e-21 106.7 163 47.9
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 7.6e-21 105.1 165 41.8
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.2e-20 103.6 157 40.8
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 2.9e-20 103.2 182 39.0
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 8.4e-20 101.7 161 42.2
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 8.4e-20 101.7 168 39.9
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 3.2e-19 99.8 191 39.3
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 7.1e-19 98.6 198 36.9
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.6e-18 95.9 160 37.5
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 7.8e-18 95.1 160 37.5
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 7.8e-18 95.1 231 32.9
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 1.0e-17 94.7 183 36.6
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.3e-17 94.4 186 37.1
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 2.3e-17 93.6 196 36.7
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 2.3e-17 93.6 196 36.7
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 3.9e-17 92.8 198 36.9
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 3.9e-17 92.8 219 35.6
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 8.7e-17 91.7 167 37.1
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 1.1e-16 91.3 186 39.8
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 2.5e-16 90.1 196 36.2
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.3e-16 89.7 104 49.0
C03p81290 Brassica napus HOM05D000250 ORTHO05D015314 5.6e-16 89.0 65 69.2
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 5.6e-16 89.0 174 37.4
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 7.3e-16 88.6 148 41.9
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.3e-16 88.6 104 48.1
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 4.7e-15 85.9 180 38.3
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 6.2e-15 85.5 153 39.2
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.2e-15 85.5 182 36.3
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.2e-15 85.5 182 36.3
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.2e-15 85.5 182 36.3
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.2e-15 85.5 182 36.3
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 8.1e-15 85.1 160 36.9
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 8.1e-15 85.1 170 38.2
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 1.1e-14 84.7 168 36.9
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 1.1e-14 84.7 235 35.7
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 2.4e-14 83.6 153 37.9
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 2.4e-14 83.6 171 36.8
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 3.1e-14 83.2 174 38.5
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 3.1e-14 83.2 215 32.6
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 5.2e-14 82.4 180 35.0
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 6.9e-14 82.0 182 36.8
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 9.0e-14 81.6 148 37.8
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 1.5e-13 80.9 215 32.6
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 1.5e-13 80.9 151 35.8
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 2.0e-13 80.5 148 36.5
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 2.0e-13 80.5 148 36.5
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.6e-13 80.1 167 35.3
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 3.4e-13 79.7 142 38.0
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 7.6e-13 78.6 126 42.1
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 9.9e-13 78.2 219 31.5
BolC3t17090H Brassica oleracea HOM05D000430 ORTHO05D000305 1.4e-11 74.3 58 65.5
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.9e-11 73.9 142 36.6
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.4e-11 73.6 182 34.6
C03p48090 Brassica napus HOM05D000430 ORTHO05D000305 9.3e-11 71.6 56 66.1
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 9.3e-11 71.6 103 42.7
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 1.6e-10 70.9 146 37.7
C04p72400 Brassica napus HOM05D000250 ORTHO05D015314 2.7e-10 70.1 66 60.6
BolC4t28726H Brassica oleracea HOM05D000250 ORTHO05D015314 2.7e-10 70.1 66 60.6
C08p46310 Brassica napus HOM05D000250 ORTHO05D015314 4.6e-10 69.3 76 51.3
BolC8t52180H Brassica oleracea HOM05D000250 ORTHO05D015314 4.6e-10 69.3 76 51.3
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 4.6e-10 69.3 173 37.6
C05p26340 Brassica napus HOM05D005305 ORTHO05D015314 6.0e-10 68.9 76 50.0
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.0e-10 68.9 173 32.4
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.7e-09 67.4 173 32.4
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 5.1e-09 65.9 138 36.2
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 6.6e-09 65.5 176 32.4
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.6e-09 65.5 175 31.4
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.7e-09 65.1 173 32.4
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.1e-08 64.7 120 38.3
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 1.9e-08 63.9 109 40.4
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.9e-08 63.9 151 30.5
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.5e-08 63.5 109 40.4
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 3.3e-08 63.2 148 32.4
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 3.3e-08 63.2 159 32.7
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 2.1e-07 60.5 145 29.0
Potri.017G111600 Populus trichocarpa HOM05D002727 ORTHO05D002856 2.8e-07 60.1 168 31.0
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 3.6e-07 59.7 159 29.6
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 4.8e-07 59.3 108 38.9
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 6.2e-07 58.9 149 28.2
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 8.1e-07 58.5 113 39.8
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 8.1e-07 58.5 154 36.4
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 8.1e-07 58.5 120 40.0
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.1e-06 58.2 102 35.3
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 1.1e-06 58.2 113 39.8
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 1.1e-06 58.2 147 29.3
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 1.4e-06 57.8 156 26.9
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 1.4e-06 57.8 139 29.5
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 1.4e-06 57.8 132 31.8
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 1.4e-06 57.8 158 27.8
Sabra17G0092700 Salix brachista HOM05D002727 ORTHO05D002856 1.4e-06 57.8 151 30.5
ECA248G2956 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.8e-06 57.4 120 37.5
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 2.4e-06 57.0 144 31.2
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 2.4e-06 57.0 113 38.9
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 2.4e-06 57.0 113 38.9
Cpa.g.sc34.48 Carica papaya HOM05D007205 ORTHO05D009175 2.4e-06 57.0 138 27.5
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.4e-06 57.0 72 48.6
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 3.1e-06 56.6 98 37.8
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 3.1e-06 56.6 144 29.9
arahy.Tifrunner.gnm1.ann1.AV0RHQ Arachis hypogaea HOM05D002727 ORTHO05D002856 4.0e-06 56.2 146 32.9
CANSAT01G3036 Cannabis sativa HOM05D002727 ORTHO05D002856 4.0e-06 56.2 141 33.3
Cpa.g.sc171.13 Carica papaya HOM05D002727 ORTHO05D002856 4.0e-06 56.2 154 31.2
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 4.0e-06 56.2 107 36.4
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 4.0e-06 56.2 178 30.9
EL10Ac6g13873 Beta vulgaris HOM05D005305 ORTHO05D006394 5.3e-06 55.8 120 35.8
COL.COLO4_20450 Corchorus olitorius HOM05D002727 ORTHO05D002856 5.3e-06 55.8 150 30.0
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 6.9e-06 55.5 135 29.6
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 6.9e-06 55.5 161 29.2
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.0e-06 55.1 178 29.8
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 9.0e-06 55.1 139 33.8
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 9.0e-06 55.1 131 33.6
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 9.0e-06 55.1 147 32.0


User provided reference genes

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