Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 2.3e-61 238.8 129 100.0
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 6.7e-61 237.3 129 99.2
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.5e-60 236.1 129 98.4
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 1.9e-47 192.6 124 87.1
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.7e-43 178.3 117 85.5
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 8.2e-43 177.2 117 84.6
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 4.1e-42 174.9 127 76.4
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 5.3e-42 174.5 117 86.3
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 5.3e-42 174.5 126 77.8
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-41 172.9 149 70.5
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 2.0e-41 172.6 117 83.8
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 2.7e-41 172.2 115 84.3
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.9e-40 168.7 107 88.8
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.4e-39 163.7 129 73.6
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 9.4e-39 163.7 107 83.2
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 2.7e-38 162.2 117 80.3
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.1e-38 161.0 118 75.4
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 1.3e-32 143.3 119 72.3
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 2.4e-26 122.5 127 59.1
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.0e-25 119.4 125 62.4
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 4.5e-25 118.2 117 62.4
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 2.3e-24 115.9 117 63.2
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 3.8e-24 115.2 117 63.2
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 3.8e-24 115.2 124 58.1
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 3.8e-24 115.2 117 63.2
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 3.8e-24 115.2 124 58.9
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 5.0e-24 114.8 124 58.9
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 5.0e-24 114.8 77 85.7
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 5.0e-24 114.8 124 58.9
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 5.0e-24 114.8 124 58.9
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 5.0e-24 114.8 124 61.3
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.9e-23 112.8 125 59.2
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.9e-23 112.8 131 56.5
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 2.5e-23 112.5 124 58.1
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 2.5e-23 112.5 124 58.1
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 3.3e-23 112.1 124 57.3
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 5.6e-23 111.3 127 59.1
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.4e-20 102.1 135 53.3
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.6e-17 93.2 123 49.6
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.7e-16 89.7 84 59.5
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.3e-16 89.4 89 55.1
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.1e-15 87.0 88 59.1
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 1.1e-15 87.0 90 53.3
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.9e-15 86.3 88 58.0
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 1.2e-14 83.6 93 57.0
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 2.8e-14 82.4 90 52.2
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 4.7e-14 81.6 80 60.0
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.7e-14 81.6 121 43.0
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 6.2e-14 81.3 90 53.3
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.0e-14 80.9 88 54.5
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 8.0e-14 80.9 130 42.3
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.8e-13 79.7 90 53.3
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.8e-13 79.7 90 53.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 2.3e-13 79.3 77 57.1
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.2e-13 78.2 85 52.9
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 5.2e-13 78.2 97 47.4
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 6.8e-13 77.8 95 49.5
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 8.9e-13 77.4 126 42.9
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.2e-12 77.0 106 48.1
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.5e-12 76.6 126 43.7
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.5e-12 76.6 87 54.0
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.5e-12 76.6 92 50.0
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.5e-12 76.6 103 49.5
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.0e-12 76.3 79 53.2
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 2.0e-12 76.3 91 50.5
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 2.0e-12 76.3 92 48.9
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 3.4e-12 75.5 125 40.0
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 3.4e-12 75.5 79 51.9
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 3.4e-12 75.5 89 51.7
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 5.8e-12 74.7 95 48.4
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.8e-12 74.7 102 48.0
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 5.8e-12 74.7 91 50.5
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 7.5e-12 74.3 113 42.5
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 9.8e-12 73.9 79 54.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 9.8e-12 73.9 79 50.6
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 9.8e-12 73.9 107 46.7
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.7e-11 73.2 92 45.7
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.7e-11 73.2 87 52.9
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 2.2e-11 72.8 98 51.0
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.9e-11 72.4 96 51.0
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 2.9e-11 72.4 81 55.6
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.7e-11 72.0 94 48.9
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 4.9e-11 71.6 91 47.3
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 4.9e-11 71.6 90 51.1
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 6.4e-11 71.2 77 53.2
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 6.4e-11 71.2 105 43.8
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 6.4e-11 71.2 113 46.0
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 6.4e-11 71.2 112 42.9
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 8.3e-11 70.9 112 42.9
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.4e-10 70.1 83 49.4
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.9e-10 69.7 72 56.9
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 1.9e-10 69.7 90 50.0
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 1.9e-10 69.7 108 46.3
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 3.2e-10 68.9 105 46.7
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 4.1e-10 68.6 117 40.2
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 4.1e-10 68.6 75 57.3
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 4.1e-10 68.6 74 51.4
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 4.1e-10 68.6 122 40.2
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 9.2e-10 67.4 81 50.6
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 9.2e-10 67.4 98 49.0
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 9.2e-10 67.4 94 42.6
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 9.2e-10 67.4 123 39.0
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 9.2e-10 67.4 92 46.7
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.2e-09 67.0 110 40.0
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 1.6e-09 66.6 71 56.3
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 1.6e-09 66.6 71 56.3
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.5e-09 65.5 82 48.8
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.5e-09 65.5 101 46.5
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 6.0e-09 64.7 77 50.6
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 7.8e-09 64.3 82 43.9
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 7.8e-09 64.3 109 40.4
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 7.8e-09 64.3 109 40.4
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.0e-08 63.9 102 41.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.7e-08 63.2 67 53.7
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 1.7e-08 63.2 76 50.0
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 1.7e-08 63.2 82 46.3
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.3e-08 62.8 83 45.8
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 2.3e-08 62.8 93 43.0
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 2.3e-08 62.8 113 44.2
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 3.9e-08 62.0 69 55.1
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.0e-08 61.6 70 52.9
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 5.0e-08 61.6 115 40.9
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 5.0e-08 61.6 113 43.4
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 5.0e-08 61.6 85 45.9
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 5.0e-08 61.6 80 45.0
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 5.0e-08 61.6 80 45.0
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 6.6e-08 61.2 79 45.6
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 6.6e-08 61.2 88 45.5
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 6.6e-08 61.2 80 46.2
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.1e-07 60.5 66 54.5
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.1e-07 60.5 91 45.1
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.1e-07 60.5 73 54.8
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.5e-07 60.1 70 52.9
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.5e-07 60.1 91 48.4
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.5e-07 60.1 94 40.4
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.9e-07 59.7 98 42.9
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.9e-07 59.7 129 41.1
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.9e-07 59.7 71 52.1
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 3.3e-07 58.9 76 46.1
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 3.3e-07 58.9 82 42.7
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 3.3e-07 58.9 94 40.4
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 5.6e-07 58.2 87 44.8
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 5.6e-07 58.2 72 50.0
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 5.6e-07 58.2 77 49.4
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 9.5e-07 57.4 72 47.2
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 9.5e-07 57.4 82 48.8
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.2e-06 57.0 75 50.7
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.2e-06 57.0 86 46.5
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.2e-06 57.0 74 47.3
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.6e-06 56.6 67 47.8
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 2.1e-06 56.2 67 50.7
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 2.8e-06 55.8 91 42.9
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 3.6e-06 55.5 72 45.8
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.6e-06 55.5 102 37.3
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 3.6e-06 55.5 78 46.2
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 8.1e-06 54.3 125 36.8
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 8.1e-06 54.3 78 44.9


User provided reference genes

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