Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 2.6e-61 238.8 147 100.0
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 6.1e-58 227.6 157 90.4
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 1.1e-54 216.9 157 82.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 1.8e-54 216.1 163 84.7
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 2.6e-53 212.2 115 100.0
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 5.0e-52 208.0 156 75.0
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 6.5e-52 207.6 149 83.2
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.7e-49 197.6 160 77.5
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 9.7e-48 193.7 157 75.2
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.3e-47 193.4 156 80.1
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 2.2e-47 192.6 112 94.6
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.1e-46 190.3 159 78.6
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 8.0e-42 174.1 107 87.9
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.8e-41 172.9 115 84.3
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 2.3e-41 172.6 107 86.9
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 3.7e-39 165.2 159 74.2
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 4.1e-38 161.8 107 85.0
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 7.2e-35 151.0 132 69.7
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 7.2e-35 151.0 117 87.2
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 2.1e-34 149.4 178 57.3
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 2.1e-34 149.4 178 57.3
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 2.1e-34 149.4 178 57.3
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 2.1e-34 149.4 178 57.3
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.7e-34 149.1 172 61.6
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-33 146.7 178 56.7
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.3e-33 146.0 181 63.0
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 6.7e-33 144.4 180 53.3
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 6.7e-33 144.4 168 63.1
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 6.7e-33 144.4 168 63.1
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.5e-32 143.3 178 54.5
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.5e-32 143.3 168 60.1
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 5.7e-32 141.4 184 52.7
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 5.7e-32 141.4 173 59.0
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 9.7e-32 140.6 173 60.7
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 4.8e-31 138.3 190 51.6
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 4.1e-30 135.2 185 51.9
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.2e-29 133.7 188 51.6
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.7e-28 129.8 188 53.2
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.5e-19 99.4 136 47.1
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 7.2e-19 97.8 110 50.9
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.2e-18 97.1 119 50.4
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.7e-18 95.1 124 50.0
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 4.7e-18 95.1 120 48.3
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 6.1e-18 94.7 112 48.2
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 8.0e-18 94.4 147 46.9
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 8.0e-18 94.4 121 46.3
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 8.0e-18 94.4 121 46.3
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 8.0e-18 94.4 112 48.2
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.0e-17 94.0 151 42.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.8e-17 93.2 112 47.3
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 2.3e-17 92.8 128 51.6
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 6.8e-17 91.3 147 42.2
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 6.8e-17 91.3 110 49.1
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.2e-16 90.5 148 45.3
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.5e-16 90.1 140 45.7
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.5e-16 90.1 157 40.1
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 2.0e-16 89.7 120 46.7
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.6e-16 89.4 76 64.5
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 2.6e-16 89.4 81 58.0
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 2.6e-16 89.4 117 59.8
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.4e-16 89.0 110 49.1
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.4e-16 89.0 138 43.5
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 5.7e-16 88.2 140 46.4
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 7.5e-16 87.8 161 48.4
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.3e-15 87.0 123 43.9
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.3e-15 87.0 131 53.4
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.2e-15 86.3 129 44.2
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.8e-15 85.9 136 49.3
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 2.8e-15 85.9 85 51.8
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 3.7e-15 85.5 157 46.5
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 3.7e-15 85.5 138 54.3
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.9e-15 85.1 85 56.5
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 4.9e-15 85.1 77 58.4
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 4.9e-15 85.1 149 43.0
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 6.3e-15 84.7 147 46.9
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 6.3e-15 84.7 160 43.8
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 8.3e-15 84.3 91 52.7
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 8.3e-15 84.3 129 46.5
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.1e-14 84.0 141 39.0
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.4e-14 83.6 74 62.2
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 2.4e-14 82.8 149 38.9
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 5.4e-14 81.6 138 41.3
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 5.4e-14 81.6 138 41.3
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 7.0e-14 81.3 151 40.4
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 7.0e-14 81.3 158 39.9
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 7.0e-14 81.3 111 58.6
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 9.2e-14 80.9 115 45.2
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.0e-13 79.7 133 42.9
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 2.7e-13 79.3 128 46.1
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.5e-13 79.0 113 45.1
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 3.5e-13 79.0 113 47.8
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 3.5e-13 79.0 113 43.4
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.5e-13 78.6 114 43.9
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 7.8e-13 77.8 126 46.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.0e-12 77.4 125 42.4
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.0e-12 77.4 85 52.9
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.3e-12 77.0 105 46.7
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.7e-12 76.6 113 47.8
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.3e-12 76.3 102 51.0
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 3.8e-12 75.5 93 45.2
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 3.8e-12 75.5 154 42.9
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 6.6e-12 74.7 92 46.7
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.6e-12 74.7 117 40.2
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 6.6e-12 74.7 117 40.2
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 6.6e-12 74.7 114 45.6
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 8.6e-12 74.3 74 56.8
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 8.6e-12 74.3 165 37.6
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.1e-11 73.9 109 56.0
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.1e-11 73.9 82 57.3
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.9e-11 73.2 128 50.8
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.9e-11 73.2 160 40.6
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.3e-11 72.4 142 40.1
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 3.3e-11 72.4 159 41.5
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 4.3e-11 72.0 71 53.5
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.3e-11 72.0 87 51.7
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 4.3e-11 72.0 102 44.1
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 5.6e-11 71.6 78 50.0
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 5.6e-11 71.6 115 39.1
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 7.3e-11 71.2 137 38.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 9.5e-11 70.9 74 55.4
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.2e-10 70.5 114 40.4
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.6e-10 70.1 148 36.5
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.6e-10 70.1 114 40.4
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.6e-10 70.1 140 37.1
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 2.8e-10 69.3 128 38.3
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.8e-10 69.3 140 37.1
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 3.6e-10 68.9 119 42.0
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 4.7e-10 68.6 99 51.5
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 8.0e-10 67.8 75 53.3
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 1.0e-09 67.4 121 52.9
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 1.0e-09 67.4 121 52.9
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 1.0e-09 67.4 175 42.9
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.4e-09 67.0 89 43.8
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 1.4e-09 67.0 87 48.3
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 1.4e-09 67.0 80 46.2
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.4e-09 67.0 114 42.1
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.4e-09 67.0 163 36.8
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.8e-09 66.6 111 45.0
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.8e-09 66.6 126 38.9
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.8e-09 66.6 67 55.2
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 1.8e-09 66.6 144 39.6
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.3e-09 66.2 82 43.9
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.1e-09 65.9 95 49.5
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 4.0e-09 65.5 81 48.1
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.2e-09 65.1 127 48.8
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 5.2e-09 65.1 75 46.7
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 8.9e-09 64.3 75 48.0
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.2e-08 63.9 143 38.5
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.2e-08 63.9 94 48.9
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.5e-08 63.5 73 53.4
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 1.5e-08 63.5 121 40.5
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 2.0e-08 63.2 86 43.0
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 2.6e-08 62.8 115 38.3
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.6e-08 62.8 82 51.2
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 3.4e-08 62.4 83 47.0
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 5.8e-08 61.6 89 43.8
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 1.7e-07 60.1 109 41.3
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 2.2e-07 59.7 166 34.3
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.2e-07 59.7 74 47.3
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 2.2e-07 59.7 79 45.6
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 2.9e-07 59.3 88 43.2
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 3.7e-07 58.9 74 45.9
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 4.9e-07 58.5 131 47.3
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.9e-07 58.5 91 45.1
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.1e-06 57.4 83 43.4
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.4e-06 56.2 89 42.7
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 4.1e-06 55.5 98 40.8
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 5.4e-06 55.1 132 46.2
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 7.0e-06 54.7 70 50.0
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 9.2e-06 54.3 82 43.9


User provided reference genes

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