Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 1.6e-92 342.8 186 100.0
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 1.6e-92 342.8 186 100.0
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 1.9e-85 319.3 185 95.1
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 1.6e-84 316.2 188 95.2
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 8.1e-84 313.9 184 94.6
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 8.4e-73 277.3 188 88.3
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 3.9e-62 241.9 182 80.2
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 4.1e-59 231.9 182 78.6
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 5.3e-59 231.5 185 78.9
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 5.0e-57 224.9 183 77.6
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 2.7e-55 219.2 186 76.3
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 4.4e-53 211.8 186 72.0
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 1.4e-51 206.8 182 72.5
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.4e-48 196.8 171 72.5
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 5.2e-46 188.3 185 63.8
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 1.1e-35 154.1 151 58.9
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 1.1e-35 154.1 152 59.2
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 2.4e-35 152.9 187 52.9
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 2.4e-35 152.9 129 63.6
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 3.1e-35 152.5 186 55.9
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 4.1e-35 152.1 189 54.5
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 5.3e-35 151.8 189 55.0
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 9.1e-35 151.0 188 53.7
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 1.6e-34 150.2 191 53.4
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 1.6e-34 150.2 187 56.7
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 4.5e-34 148.7 129 62.8
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 1.0e-33 147.5 157 57.3
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 1.3e-33 147.1 133 59.4
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 1.7e-33 146.7 187 49.7
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 2.2e-33 146.4 189 51.9
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 2.2e-33 146.4 166 52.4
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 2.9e-33 146.0 184 50.0
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 2.9e-33 146.0 181 52.5
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 5.0e-33 145.2 187 50.8
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 6.5e-33 144.8 160 56.2
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 1.1e-32 144.1 184 51.6
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 2.5e-32 142.9 193 52.3
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 3.2e-32 142.5 151 56.3
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 5.5e-32 141.7 196 49.5
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 7.2e-32 141.4 189 51.3
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 9.4e-32 141.0 153 56.9
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 1.2e-31 140.6 187 52.9
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 1.6e-31 140.2 176 51.1
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 3.6e-31 139.0 173 53.8
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 4.7e-31 138.7 173 53.8
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 1.0e-30 137.5 195 48.2
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 1.8e-30 136.7 107 69.2
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 2.3e-30 136.3 189 49.2
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 3.0e-30 136.0 172 52.9
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 3.0e-30 136.0 193 49.2
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 4.0e-30 135.6 122 57.4
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 6.8e-30 134.8 187 50.8
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 6.8e-30 134.8 175 48.6
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 8.8e-30 134.4 158 51.3
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 1.2e-29 134.0 158 51.3
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 3.4e-29 132.5 187 48.1
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 3.4e-29 132.5 161 51.6
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 5.7e-29 131.7 174 53.4
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 7.5e-29 131.3 147 52.4
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 1.3e-28 130.6 173 49.1
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 1.7e-28 130.2 182 50.5
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 2.2e-28 129.8 190 47.9
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 4.8e-28 128.6 163 46.0
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 1.4e-27 127.1 181 47.5
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 1.4e-27 127.1 107 62.6
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 1.8e-27 126.7 188 48.9
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 3.1e-27 125.9 143 48.3
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 4.1e-27 125.6 133 54.1
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 5.4e-27 125.2 168 51.2
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 7.0e-27 124.8 186 45.7
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 9.1e-27 124.4 135 53.3
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 1.2e-26 124.0 135 52.6
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 2.7e-26 122.9 183 49.2
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 3.5e-26 122.5 169 49.1
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 4.5e-26 122.1 124 54.0
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 5.9e-26 121.7 157 47.1
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 1.7e-25 120.2 186 46.2
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 6.6e-25 118.2 185 45.4
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 1.9e-24 116.7 134 51.5
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 4.2e-24 115.5 142 48.6
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 1.4e-22 110.5 144 47.9
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 4.0e-22 109.0 191 40.8
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 6.8e-22 108.2 123 48.0
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 2.6e-21 106.3 130 47.7
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 3.4e-21 105.9 206 41.7
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 1.1e-19 100.9 156 43.6
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 1.2e-18 97.4 140 52.1
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 9.5e-16 87.8 56 78.6
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 4.0e-14 82.4 123 45.5
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 8.9e-14 81.3 58 70.7
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 8.9e-14 81.3 134 44.8
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 5.4e-11 72.0 99 42.4
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 9.2e-11 71.2 70 54.3
THA.LOC104804650 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 4.6e-10 68.9 82 53.7
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 1.5e-08 63.9 55 56.4
Ca_22684_v3 Cicer arietinum L. HOM05D007485 ORTHO05D009437 4.3e-08 62.4 54 55.6
CBR_g11056 Chara braunii HOM05D007485 ORTHO05D009437 1.1e-06 57.8 121 33.9
Mapoly0101s0026 Marchantia polymorpha HOM05D007485 ORTHO05D009437 3.1e-06 56.2 56 53.6


User provided reference genes

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