Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 1.0e-85 320.1 168 100.0
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 1.7e-72 276.2 167 85.0
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 6.5e-72 274.2 167 84.4
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 4.2e-71 271.6 167 83.2
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 9.3e-71 270.4 167 83.2
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 6.7e-69 264.2 167 80.2
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 1.1e-68 263.5 167 80.2
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 1.9e-68 262.7 167 81.4
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 1.6e-67 259.6 167 78.4
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 3.7e-67 258.5 168 84.5
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 9.0e-66 253.8 167 77.2
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 2.0e-65 252.7 167 77.8
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 2.6e-65 252.3 167 77.8
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 5.9e-65 251.1 167 76.6
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 1.3e-64 250.0 167 76.0
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 3.8e-64 248.4 167 76.6
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 3.8e-64 248.4 167 76.6
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 2.5e-63 245.7 167 75.4
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 4.1e-50 201.8 167 62.9
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 1.5e-49 199.9 167 63.5
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 9.4e-47 190.7 168 60.1
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 2.1e-46 189.5 167 62.3
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 1.8e-45 186.4 153 64.1
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 5.1e-45 184.9 167 61.7
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 1.3e-43 180.3 167 58.7
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 1.8e-42 176.4 167 60.5
BolC8t49030H Brassica oleracea HOM05D009121 ORTHO05D001888 2.5e-39 166.0 94 90.4
Aa31LG1G4060 Aethionema arabicum HOM05D009121 ORTHO05D001888 9.4e-39 164.1 143 57.3
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 9.4e-39 164.1 168 56.5
C09p21480 Brassica napus HOM05D009121 ORTHO05D001888 1.5e-36 156.8 167 53.3
BolC9t55053H Brassica oleracea HOM05D009121 ORTHO05D001888 1.5e-36 156.8 167 53.3
A09p17300 Brassica napus HOM05D009121 ORTHO05D001888 2.0e-36 156.4 167 52.7
BraA09t37359Z Brassica rapa HOM05D009121 ORTHO05D001888 2.0e-36 156.4 167 52.7
BcaNung05350 Brassica carinata HOM05D009121 ORTHO05D001888 9.7e-36 154.1 167 52.1
C08p13970 Brassica napus HOM05D009121 ORTHO05D001888 1.2e-25 120.6 70 90.0
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 3.6e-14 82.4 154 31.8
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 4.0e-13 79.0 131 34.4
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 6.8e-13 78.2 133 33.1
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.5e-12 77.0 151 31.1
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 1.5e-12 77.0 162 34.6
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 5.7e-12 75.1 134 33.6
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 9.8e-12 74.3 157 29.9
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 9.8e-12 74.3 131 35.1
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.7e-11 73.6 157 33.1
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 1.7e-11 73.6 151 33.1
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 1.7e-11 73.6 151 33.1
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 1.7e-11 73.6 151 33.1
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 1.7e-11 73.6 131 34.4
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 2.9e-11 72.8 130 34.6
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 2.9e-11 72.8 131 33.6
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 3.7e-11 72.4 154 30.5
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 3.7e-11 72.4 137 34.3
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 4.9e-11 72.0 132 35.6
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 4.9e-11 72.0 129 33.3
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 6.4e-11 71.6 130 33.8
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 6.4e-11 71.6 132 33.3
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 6.4e-11 71.6 153 30.7
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 8.3e-11 71.2 131 33.6
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 1.4e-10 70.5 159 32.1
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 1.8e-10 70.1 145 32.4
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 2.4e-10 69.7 131 31.3
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 2.4e-10 69.7 145 29.7
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 4.1e-10 68.9 153 31.4
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 1.2e-09 67.4 131 30.5
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 1.2e-09 67.4 141 29.1
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 1.2e-09 67.4 131 30.5
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 1.2e-09 67.4 141 29.1
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.2e-09 67.4 144 28.5
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 1.6e-09 67.0 156 32.1
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 2.0e-09 66.6 157 30.6
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 2.7e-09 66.2 132 31.8
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 4.6e-09 65.5 132 26.5
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 4.6e-09 65.5 136 31.6
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 5.9e-09 65.1 155 31.0
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 5.9e-09 65.1 162 29.6
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 7.8e-09 64.7 137 31.4
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 7.8e-09 64.7 161 28.6
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 1.0e-08 64.3 162 25.3
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 1.0e-08 64.3 162 25.3
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 1.3e-08 63.9 131 29.8
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 1.7e-08 63.5 151 31.8
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 1.7e-08 63.5 151 31.8
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 2.3e-08 63.2 151 31.8
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 3.0e-08 62.8 149 28.2
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 3.0e-08 62.8 144 31.9
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 3.9e-08 62.4 155 33.5
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 5.0e-08 62.0 162 29.6
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 5.0e-08 62.0 162 29.6
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 6.6e-08 61.6 136 28.7
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 8.6e-08 61.2 142 31.7
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 1.1e-07 60.8 115 33.9
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.9e-07 60.1 115 33.9
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.3e-07 59.3 134 26.1
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 4.3e-07 58.9 164 26.2
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 5.6e-07 58.5 151 28.5
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 5.6e-07 58.5 153 28.1
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 5.6e-07 58.5 134 30.6
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 7.3e-07 58.2 129 28.7
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 7.3e-07 58.2 147 29.3
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.2e-06 57.4 143 26.6
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.6e-06 57.0 142 31.7
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.1e-06 56.6 139 27.3
Prupe.1G249100 Prunus persica HOM05D008070 ORTHO05D001888 3.6e-06 55.8 146 26.7
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 3.6e-06 55.8 164 25.0
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 4.7e-06 55.5 147 29.9
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 6.2e-06 55.1 144 28.5
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 8.0e-06 54.7 136 27.9
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 8.0e-06 54.7 161 28.0


User provided reference genes

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