Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.3e-191 672.9 338 100.0
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 6.9e-190 667.2 338 98.8
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 9.0e-190 666.8 338 98.8
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 1.2e-189 666.4 338 98.8
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 7.6e-189 663.7 338 98.2
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 1.3e-188 662.9 338 97.6
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 1.7e-188 662.5 338 97.9
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 2.2e-188 662.1 338 98.2
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 3.8e-188 661.4 335 98.5
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 6.4e-188 660.6 338 97.9
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 6.4e-188 660.6 338 97.9
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 8.4e-188 660.2 338 97.6
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 1.1e-187 659.8 335 98.5
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 2.4e-187 658.7 335 98.2
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.4e-187 658.7 335 98.2
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 7.9e-186 653.7 338 97.3
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.0e-185 653.3 335 97.6
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 2.3e-185 652.1 335 97.3
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 5.1e-185 651.0 335 97.0
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 6.2e-183 644.0 351 93.2
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 4.0e-182 641.3 329 97.3
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 6.0e-178 627.5 338 93.2
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 6.7e-177 624.0 338 92.3
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.3e-175 619.8 316 98.1
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 5.1e-169 597.8 364 86.0
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.8e-166 589.3 338 86.1
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 2.0e-165 585.9 336 86.0
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 1.3e-164 583.2 336 85.1
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.3e-164 583.2 336 84.5
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.7e-164 582.8 336 84.5
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.2e-164 582.4 333 85.3
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 3.8e-164 581.6 333 84.7
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 8.5e-164 580.5 339 85.0
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 1.4e-163 579.7 336 84.5
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 1.4e-163 579.7 336 84.2
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.9e-163 579.3 333 83.5
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.9e-163 579.3 339 83.8
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 3.2e-163 578.6 336 83.9
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 4.2e-163 578.2 334 85.0
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 7.2e-163 577.4 333 83.8
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 7.2e-163 577.4 338 84.3
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 9.4e-163 577.0 334 84.1
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.4e-163 577.0 333 82.9
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 9.4e-163 577.0 336 83.9
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 9.4e-163 577.0 338 83.1
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 1.2e-162 576.6 334 84.4
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 2.1e-162 575.9 334 84.4
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 2.1e-162 575.9 334 84.4
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.7e-162 575.5 333 84.1
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 3.6e-162 575.1 338 84.3
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 4.6e-162 574.7 333 84.7
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.6e-162 574.7 336 83.0
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 6.1e-162 574.3 335 83.9
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.1e-162 574.3 333 83.5
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 7.9e-162 573.9 333 83.8
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 7.9e-162 573.9 333 83.8
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 7.9e-162 573.9 335 83.3
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.0e-161 573.5 334 83.5
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.0e-161 573.5 336 83.0
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 1.8e-161 572.8 336 82.7
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 1.8e-161 572.8 335 83.9
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.8e-161 572.8 333 83.5
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 2.3e-161 572.4 337 82.5
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 3.0e-161 572.0 338 82.8
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.9e-161 571.6 338 83.7
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.9e-161 571.6 333 83.8
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 5.1e-161 571.2 333 84.4
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.7e-161 570.9 336 82.4
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 6.7e-161 570.9 337 83.4
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 8.8e-161 570.5 336 82.4
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.1e-160 570.1 338 83.4
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.1e-160 570.1 338 83.4
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 1.1e-160 570.1 336 83.3
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 1.5e-160 569.7 336 83.0
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 2.0e-160 569.3 339 83.5
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 2.0e-160 569.3 336 82.4
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 2.0e-160 569.3 336 82.4
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 2.0e-160 569.3 336 82.4
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 5.7e-160 567.8 336 82.4
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 5.7e-160 567.8 336 82.7
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 5.7e-160 567.8 336 82.7
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 5.7e-160 567.8 336 82.4
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 5.7e-160 567.8 334 82.6
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 7.4e-160 567.4 336 82.1
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 9.7e-160 567.0 334 82.3
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 9.7e-160 567.0 338 82.8
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 9.7e-160 567.0 336 82.7
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 1.3e-159 566.6 334 82.3
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.3e-159 566.6 339 82.9
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.7e-159 566.2 336 82.1
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 2.2e-159 565.8 335 82.4
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 2.2e-159 565.8 336 81.8
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 3.7e-159 565.1 336 82.1
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.7e-159 565.1 336 81.5
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 4.8e-159 564.7 336 81.8
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 8.2e-159 563.9 336 82.7
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 1.1e-158 563.5 337 82.2
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 1.1e-158 563.5 333 83.2
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.4e-158 563.1 335 83.3
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.4e-158 563.1 336 82.1
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 3.1e-158 562.0 334 82.0
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 3.1e-158 562.0 335 83.0
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 7.7e-157 557.4 333 80.8
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 5.0e-156 554.7 355 78.6
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 3.2e-155 552.0 319 84.6
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 4.7e-154 548.1 335 80.6
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.4e-153 546.6 318 84.6
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.3e-153 545.8 317 84.2
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 4.4e-152 541.6 333 80.2
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 9.7e-152 540.4 309 84.1
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.3e-151 540.0 333 78.7
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 2.8e-151 538.9 309 84.1
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 3.7e-151 538.5 378 72.0
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 3.1e-150 535.4 319 83.1
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 3.1e-150 535.4 334 78.7
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 5.3e-150 534.6 336 79.8
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 1.6e-149 533.1 317 82.0
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 2.9e-148 528.9 316 82.3
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.2e-147 525.4 333 78.1
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 2.3e-145 519.2 336 78.0
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 3.0e-145 518.8 337 74.8
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 5.2e-145 518.1 339 73.5
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 4.4e-144 515.0 338 74.3
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.4e-142 510.0 335 74.0
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.1e-142 507.3 335 73.7
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 5.9e-141 504.6 381 69.0
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.4e-137 493.4 421 63.2
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 1.1e-131 473.8 271 85.2
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 2.5e-131 472.6 316 72.2
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 3.2e-131 472.2 292 79.5
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 1.1e-126 457.2 335 71.0
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.4e-126 456.1 265 84.2
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.1e-126 455.3 265 84.5
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 4.1e-126 455.3 265 84.5
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 6.1e-122 441.4 336 69.0
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 7.5e-120 434.5 344 64.8
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.3e-119 433.7 337 67.7
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 8.0e-114 414.5 238 84.9
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.5e-112 410.2 329 60.2
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.7e-111 406.8 251 78.5
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 6.6e-108 394.8 251 77.7
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.9e-102 376.7 246 75.2
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.9e-102 376.7 329 59.6
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 4.7e-98 362.1 216 80.6
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 8.1e-98 361.3 326 54.3
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 8.7e-52 208.4 132 77.3
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 3.4e-40 169.9 164 58.5
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 4.8e-34 149.4 179 52.5
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 4.4e-27 126.3 79 74.7
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 4.8e-26 122.9 74 81.1
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.1e-25 121.7 72 79.2
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 3.1e-25 120.2 79 72.2
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 4.8e-18 96.3 77 61.0
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 2.9e-15 87.0 51 82.4
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 6.1e-13 79.3 99 47.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 5.7e-11 72.8 57 66.7
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 1.3e-10 71.6 41 75.6
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 1.4e-09 68.2 100 42.0
Os06g0703600 Oryza sativa ssp. japonica HOM05D002797 ORTHO05D003496 2.0e-08 64.3 171 26.9
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 1.7e-07 61.2 60 55.0
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 1.7e-07 61.2 60 55.0


User provided reference genes

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