Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 5.3e-137 492.3 595 100.0
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 5.0e-127 459.1 598 97.2
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 1.8e-124 450.7 603 96.4
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 5.4e-113 412.5 575 96.9
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 3.5e-112 409.8 604 93.4
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 1.4e-108 397.9 604 91.9
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 1.6e-104 384.4 606 91.1
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 2.3e-103 380.6 610 91.0
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.1e-102 378.3 596 91.3
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 1.1e-102 378.3 611 91.7
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 1.6e-101 374.4 596 91.1
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 1.6e-101 374.4 596 91.1
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 1.1e-100 371.7 596 90.8
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 1.1e-100 371.7 596 90.8
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 1.8e-100 370.9 607 90.6
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 1.5e-94 351.3 599 89.5
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.1e-92 345.1 607 88.1
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 3.1e-92 343.6 607 88.1
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 1.0e-87 328.6 613 65.7
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 4.4e-83 313.2 606 85.1
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 4.8e-69 266.5 597 78.1
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.9e-66 257.3 608 79.4
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.9e-66 257.3 608 79.4
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 6.4e-66 256.1 604 78.0
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 8.4e-66 255.8 603 76.9
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 3.2e-65 253.8 624 74.8
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 5.1e-63 246.5 602 76.4
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 8.7e-63 245.7 608 77.1
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 1.5e-62 245.0 608 79.3
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 3.3e-62 243.8 606 79.2
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 4.3e-62 243.4 546 84.1
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 4.3e-62 243.4 598 77.1
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 1.3e-61 241.9 622 74.8
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 2.8e-61 240.7 620 76.3
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 3.7e-61 240.4 549 80.5
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 4.8e-61 240.0 614 76.7
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 8.1e-61 239.2 587 77.5
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 1.4e-60 238.4 597 76.7
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 1.8e-60 238.0 567 79.5
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 2.4e-60 237.7 568 78.2
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 3.1e-60 237.3 611 75.6
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 3.1e-60 237.3 597 76.7
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 4.0e-60 236.9 619 75.8
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 5.3e-60 236.5 602 77.9
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 1.5e-59 235.0 619 75.1
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 4.5e-59 233.4 613 74.7
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 5.8e-59 233.0 618 74.9
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 1.3e-58 231.9 620 75.0
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 2.2e-58 231.1 599 78.8
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 6.5e-58 229.6 610 71.6
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 8.4e-58 229.2 602 75.2
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.1e-57 228.8 610 71.8
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 2.1e-56 224.6 603 75.8
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 1.8e-55 221.5 641 60.7
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 5.1e-55 219.9 605 72.9
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 1.1e-54 218.8 230 55.7
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 1.1e-54 218.8 567 80.6
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 1.5e-54 218.4 619 73.3
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 2.5e-54 217.6 606 76.6
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 9.6e-54 215.7 541 79.1
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 2.8e-53 214.2 578 77.3
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.8e-52 211.5 234 56.4
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.2e-51 208.8 186 62.4
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 2.0e-51 208.0 607 75.5
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 3.4e-51 207.2 611 73.3
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 4.5e-51 206.8 235 54.0
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 7.6e-51 206.1 605 75.7
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 1.7e-50 204.9 195 59.0
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 2.2e-50 204.5 608 74.2
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 2.9e-50 204.1 596 64.4
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 1.1e-49 202.2 603 73.1
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 3.2e-49 200.7 607 70.7
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 5.5e-49 199.9 560 67.9
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 1.2e-48 198.7 230 50.9
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.6e-48 198.4 568 76.4
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 6.1e-48 196.4 568 75.7
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 1.3e-47 195.3 191 59.2
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.0e-47 194.1 253 51.8
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 3.9e-47 193.7 614 74.1
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 3.9e-47 193.7 610 72.1
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 1.1e-46 192.2 582 73.2
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 7.4e-46 189.5 552 77.0
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 9.7e-46 189.1 238 48.7
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 6.3e-45 186.4 181 56.9
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 1.1e-44 185.7 181 58.6
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 1.4e-44 185.3 181 58.0
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 1.8e-44 184.9 190 54.2
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 2.4e-44 184.5 164 59.1
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 4.1e-44 183.7 484 87.4
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 6.9e-44 183.0 153 64.1
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 1.0e-42 179.1 592 74.0
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 2.9e-42 177.6 254 46.1
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 2.9e-42 177.6 214 56.1
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 3.8e-42 177.2 471 88.1
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 8.5e-42 176.0 261 47.5
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.4e-41 175.3 619 60.7
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 9.4e-41 172.6 241 44.0
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 4.6e-40 170.2 184 53.8
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 3.0e-39 167.5 219 50.7
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 1.1e-38 165.6 219 50.2
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 4.8e-37 160.2 123 65.9
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 2.4e-36 157.9 120 65.8
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 3.1e-36 157.5 123 62.6
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 3.4e-35 154.1 192 47.4
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 5.0e-34 150.2 209 46.4
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 3.2e-33 147.5 540 70.4
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 2.1e-32 144.8 166 45.2
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 1.3e-29 135.6 548 73.2
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.7e-29 134.0 181 49.7
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 3.7e-29 134.0 181 49.7
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 1.2e-27 129.0 601 67.1
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.2e-22 112.5 91 89.0
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 7.5e-22 109.8 159 43.4
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 3.2e-17 94.4 54 87.0
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 1.6e-16 92.0 155 41.3
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 2.1e-16 91.7 64 68.8
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 2.3e-15 88.2 165 37.6
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 6.8e-15 86.7 146 40.4
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 6.8e-15 86.7 159 35.8
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 2.0e-11 75.1 82 74.4
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 8.5e-10 69.7 144 32.6
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 8.5e-10 69.7 62 53.2
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 5.5e-09 67.0 188 31.9
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 5.5e-09 67.0 188 31.9


User provided reference genes

Program Settings