Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 1.6e-117 426.0 199 100.0
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 6.0e-117 424.1 199 99.5
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 1.5e-115 419.5 199 97.5
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 2.1e-114 415.6 199 96.0
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 5.1e-108 394.4 199 89.9
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 8.6e-108 393.7 199 92.0
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 2.5e-107 392.1 187 98.9
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 2.5e-107 392.1 196 90.8
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 2.1e-106 389.0 196 90.8
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.4e-105 386.3 197 90.4
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 4.9e-103 377.9 193 90.2
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 8.4e-103 377.1 196 88.8
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 2.7e-101 372.1 192 88.0
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 9.6e-99 363.6 191 90.1
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 1.3e-98 363.2 191 89.0
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 1.3e-98 363.2 191 89.0
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.4e-94 349.7 198 79.8
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 3.2e-94 348.6 194 80.9
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.4e-89 333.2 194 78.4
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.3e-75 285.4 198 65.7
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 9.6e-75 283.9 198 66.7
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 9.6e-75 283.9 198 66.2
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 3.7e-74 282.0 198 67.2
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 4.8e-74 281.6 186 70.4
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 8.2e-74 280.8 198 65.2
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.4e-73 279.3 196 66.3
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.1e-73 278.9 198 64.1
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.1e-73 278.9 198 64.1
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 3.1e-73 278.9 201 66.2
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 4.1e-73 278.5 198 65.2
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.1e-73 278.5 198 65.2
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 4.1e-73 278.5 200 64.5
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 6.9e-73 277.7 218 61.5
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 9.0e-73 277.3 204 64.7
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 1.2e-72 276.9 204 64.7
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.2e-72 276.9 196 65.8
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 1.5e-72 276.6 188 68.1
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.5e-72 276.6 195 66.7
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.0e-72 276.2 198 64.1
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 3.4e-72 275.4 193 66.8
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 4.5e-72 275.0 199 65.3
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 7.6e-72 274.2 198 64.1
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 2.2e-71 272.7 196 64.3
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.2e-71 272.7 196 64.3
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 3.8e-71 271.9 198 63.1
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 3.8e-71 271.9 196 65.3
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 5.0e-71 271.6 203 63.1
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.1e-70 270.4 201 63.7
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 1.4e-70 270.0 195 63.6
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 2.5e-70 269.2 198 63.6
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 3.2e-70 268.9 198 61.1
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 4.2e-70 268.5 194 65.5
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 5.5e-70 268.1 188 64.4
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 7.2e-70 267.7 188 64.4
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 9.3e-70 267.3 196 63.8
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 9.3e-70 267.3 198 63.1
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 1.2e-69 266.9 190 64.7
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.2e-69 266.9 196 63.8
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 1.6e-69 266.5 188 65.4
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 2.7e-69 265.8 184 64.1
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 3.6e-69 265.4 135 92.6
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 6.1e-69 264.6 198 62.1
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 7.9e-69 264.2 198 62.6
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 1.0e-68 263.8 191 63.9
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.0e-68 263.8 196 64.8
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.0e-68 263.8 183 67.2
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 1.3e-68 263.5 199 61.8
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 1.3e-68 263.5 196 62.2
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 1.8e-68 263.1 198 61.1
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 2.3e-68 262.7 190 63.7
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 3.0e-68 262.3 202 58.9
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 6.7e-68 261.2 196 63.8
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 8.7e-68 260.8 190 63.7
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 2.5e-67 259.2 187 65.8
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 2.2e-66 256.1 187 64.2
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 2.2e-66 256.1 194 62.4
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 2.2e-66 256.1 194 62.4
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.2e-66 256.1 196 58.7
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.8e-66 255.0 188 62.8
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 6.3e-66 254.6 198 58.1
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 6.3e-66 254.6 189 63.5
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 6.3e-66 254.6 193 63.7
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 1.1e-65 253.8 196 59.2
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.4e-65 253.4 188 62.8
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.4e-65 253.4 185 62.2
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 1.8e-65 253.1 195 59.5
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.8e-65 253.1 198 58.1
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 2.4e-65 252.7 190 61.1
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 2.4e-65 252.7 190 61.1
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 5.3e-65 251.5 194 61.3
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 5.3e-65 251.5 198 60.1
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 4.5e-64 248.4 188 59.6
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 4.5e-64 248.4 198 58.1
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.0e-63 247.3 184 62.5
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.3e-63 246.9 195 55.9
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 1.7e-63 246.5 201 57.7
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 2.2e-63 246.1 194 56.2
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 5.0e-63 245.0 196 57.7
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 1.9e-62 243.0 186 61.3
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.9e-62 243.0 186 60.8
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 1.6e-61 240.0 186 60.8
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 2.1e-61 239.6 183 65.0
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 2.7e-61 239.2 191 56.5
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 3.9e-60 235.3 260 46.5
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 5.7e-59 231.5 194 55.2
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.7e-58 229.9 179 60.9
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.1e-57 227.3 188 56.4
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 1.8e-57 226.5 187 55.6
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 6.9e-57 224.6 204 54.4
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 7.7e-56 221.1 147 65.3
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.0e-55 220.7 196 55.1
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 2.5e-54 216.1 189 54.5
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 1.6e-53 213.4 160 65.0
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 2.1e-53 213.0 132 68.9
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 2.1e-53 213.0 271 44.3
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.6e-53 212.2 155 63.9
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 4.7e-53 211.8 210 51.0
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 2.3e-52 209.5 196 52.6
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 8.8e-52 207.6 186 53.8
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 4.4e-51 205.3 195 56.4
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.7e-51 204.9 187 54.5
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 9.7e-51 204.1 186 52.2
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.2e-50 203.0 183 55.7
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 4.8e-50 201.8 195 56.4
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 4.8e-50 201.8 195 56.4
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.8e-50 201.8 173 57.8
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.8e-50 201.8 127 64.6
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 4.8e-50 201.8 198 49.5
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 1.2e-48 197.2 186 47.3
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 1.6e-48 196.8 206 48.5
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 4.5e-48 195.3 201 46.3
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 7.7e-48 194.5 188 50.0
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 4.2e-46 188.7 190 48.4
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 7.2e-46 188.0 199 47.7
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 1.0e-44 184.1 158 57.0
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 1.8e-44 183.3 153 56.9
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 6.7e-44 181.4 154 58.4
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 8.8e-44 181.0 185 47.6
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 5.7e-43 178.3 182 45.1
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 1.3e-42 177.2 180 49.4
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.7e-42 176.8 131 64.1
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 4.8e-42 175.3 168 50.0
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 7.0e-41 171.4 203 42.4
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 5.9e-40 168.3 108 63.9
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.3e-39 167.2 138 60.9
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 2.9e-39 166.0 138 59.4
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 2.5e-38 162.9 186 48.9
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 4.2e-38 162.2 199 45.2
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.6e-37 160.2 199 43.7
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 1.2e-35 154.1 196 39.3
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 2.6e-35 152.9 136 53.7
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 9.2e-25 117.9 186 36.6
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 4.3e-22 109.0 87 55.2
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 4.0e-20 102.4 86 54.7
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 1.3e-15 87.4 162 29.6
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.9e-14 83.6 72 52.8
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 5.6e-14 82.0 155 29.0
Lalb_Chr17g0347351 Lupinus albus HOM05D006348 ORTHO05D008261 8.0e-13 78.2 151 28.5
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 3.1e-12 76.3 155 29.0
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 4.0e-12 75.9 150 35.3
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 8.9e-12 74.7 163 30.1
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.0e-11 73.6 57 52.6
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 2.6e-11 73.2 155 27.7
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 4.4e-11 72.4 155 26.5
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 5.4e-09 65.5 160 26.2
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 8.6e-07 58.2 29 79.3
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 4.3e-06 55.8 92 32.6


User provided reference genes

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