Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38529 Brassica carinata HOM05D000753 ORTHO05D017534 1.5e-59 232.6 114 100.0
BcaC02g10079 Brassica carinata HOM05D016796 ORTHO05D017534 4.1e-54 214.5 114 92.1
BcaC01g06826 Brassica carinata HOM05D000753 ORTHO05D017534 5.4e-54 214.2 114 92.1
BolC8t52636H Brassica oleracea HOM05D000753 ORTHO05D017534 5.4e-54 214.2 114 92.1
C08p51100 Brassica napus HOM05D000753 ORTHO05D017534 2.0e-53 212.2 113 92.0
C04p33010 Brassica napus HOM05D000753 ORTHO05D017534 5.0e-52 207.6 113 91.2
A01p36920 Brassica napus HOM05D000753 ORTHO05D003622 1.4e-38 162.9 82 97.6
BraA01t03751Z Brassica rapa HOM05D000753 ORTHO05D003622 1.4e-38 162.9 82 97.6
BcaB04g20843 Brassica carinata HOM05D000753 ORTHO05D003622 7.1e-38 160.6 82 96.3
BcaC09g48700 Brassica carinata HOM05D000753 ORTHO05D003622 1.6e-37 159.5 82 96.3
C01p46810 Brassica napus HOM05D000753 ORTHO05D003622 1.6e-37 159.5 82 96.3
BolC1t04654H Brassica oleracea HOM05D000753 ORTHO05D003622 1.6e-37 159.5 82 96.3
Thhalv10020956m.g Eutrema salsugineum HOM05D000753 ORTHO05D003622 6.0e-37 157.5 82 95.1
BolC4t24864H Brassica oleracea HOM05D000753 ORTHO05D017534 4.3e-35 151.4 79 94.9
AT3G17430 Arabidopsis thaliana HOM05D000753 ORTHO05D003622 2.1e-34 149.1 82 90.2
BcaC05g28791 Brassica carinata HOM05D000753 ORTHO05D003622 2.1e-34 149.1 82 90.2
Carub.0003s1715 Capsella rubella HOM05D000753 ORTHO05D003622 2.8e-34 148.7 82 90.2
AL3G30510 Arabidopsis lyrata HOM05D000753 ORTHO05D003622 6.2e-34 147.5 82 89.0
Sp3g15600 Schrenkiella parvula HOM05D000753 ORTHO05D003622 2.3e-33 145.6 82 90.2
CARHR092750 Cardamine hirsuta HOM05D000753 ORTHO05D003622 4.4e-32 141.4 82 86.6
BolC5t33640H Brassica oleracea HOM05D000753 ORTHO05D003622 2.3e-28 129.0 82 82.9
BcaB06g25846 Brassica carinata HOM05D000753 ORTHO05D017534 1.4e-25 119.8 75 84.0
Aa31LG8G4380 Aethionema arabicum HOM05D000753 ORTHO05D003622 1.8e-25 119.4 81 74.1
Aa31LG10G5530 Aethionema arabicum HOM05D000753 ORTHO05D003622 1.5e-24 116.3 85 72.9
Sp1g35190 Schrenkiella parvula HOM05D000753 ORTHO05D003622 2.6e-24 115.5 81 74.1
Thhalv10011587m.g Eutrema salsugineum HOM05D000753 ORTHO05D003622 2.2e-23 112.5 81 75.3
THA.LOC104802615 Tarenaya hassleriana HOM05D000753 ORTHO05D003622 2.2e-23 112.5 90 72.2
CARHR037860 Cardamine hirsuta HOM05D000753 ORTHO05D003622 2.9e-23 112.1 81 75.3
AL1G54820 Arabidopsis lyrata HOM05D000753 ORTHO05D003622 4.9e-23 111.3 81 75.3
AT1G48230 Arabidopsis thaliana HOM05D000753 ORTHO05D003622 6.4e-23 110.9 81 75.3
BcaB04g17456 Brassica carinata HOM05D000753 ORTHO05D003622 6.4e-23 110.9 82 73.2
BcaC07g37162 Brassica carinata HOM05D000753 ORTHO05D003622 6.4e-23 110.9 82 73.2
A08p05000 Brassica napus HOM05D000753 ORTHO05D003622 6.4e-23 110.9 82 73.2
A08p05030 Brassica napus HOM05D000753 ORTHO05D003622 6.4e-23 110.9 82 73.2
C08p05330 Brassica napus HOM05D000753 ORTHO05D003622 6.4e-23 110.9 82 73.2
BraA08t32522Z Brassica rapa HOM05D000753 ORTHO05D003622 6.4e-23 110.9 82 73.2
BcaC08g43015 Brassica carinata HOM05D000753 ORTHO05D003622 7.1e-22 107.5 81 72.8
A06p04620 Brassica napus HOM05D000753 ORTHO05D003622 7.1e-22 107.5 81 72.8
C06p02700 Brassica napus HOM05D000753 ORTHO05D003622 7.1e-22 107.5 81 72.8
BolC6t35396H Brassica oleracea HOM05D000753 ORTHO05D003622 7.1e-22 107.5 81 72.8
BraA06t23666Z Brassica rapa HOM05D000753 ORTHO05D003622 7.1e-22 107.5 81 72.8
Thecc.04G312300 Theobroma cacao HOM05D000753 ORTHO05D003622 3.5e-21 105.1 87 63.2
Carub.0001s3737 Capsella rubella HOM05D000753 ORTHO05D003622 4.6e-21 104.8 81 71.6
Duzib151G0280 Durio zibethinus HOM05D000753 ORTHO05D003622 7.8e-21 104.0 85 60.0
BcaB07g33781 Brassica carinata HOM05D000753 ORTHO05D003622 1.0e-20 103.6 84 70.2
THA.LOC104821811 Tarenaya hassleriana HOM05D000753 ORTHO05D003622 1.3e-20 103.2 76 73.7
Duzib212G0655 Durio zibethinus HOM05D000753 ORTHO05D003622 3.0e-20 102.1 89 61.8
A05p32350 Brassica napus HOM05D000753 ORTHO05D003622 3.9e-20 101.7 82 69.5
arahy.Tifrunner.gnm1.ann1.G9V4C0 Arachis hypogaea HOM05D000753 ORTHO05D003622 6.6e-20 100.9 88 63.6
BcaC08g43017 Brassica carinata HOM05D000753 ORTHO05D003622 6.6e-20 100.9 84 69.0
Cpa.g.sc146.29 Carica papaya HOM05D000753 ORTHO05D003622 6.6e-20 100.9 90 66.7
Ca_21380_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 6.6e-20 100.9 87 63.2
Ca_30148_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 6.6e-20 100.9 87 63.2
arahy.Tifrunner.gnm1.ann1.EDF5ZB Arachis hypogaea HOM05D000753 ORTHO05D003622 8.7e-20 100.5 88 63.6
Ciclev10005167m.g Citrus clementina HOM05D000753 ORTHO05D003622 2.5e-19 99.0 89 65.2
Ca_26461_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 3.3e-19 98.6 87 64.4
MELO3C006748.2 Cucumis melo HOM05D000753 ORTHO05D003622 3.3e-19 98.6 82 64.6
Psat0s2012g0120 Pisum sativum HOM05D000753 ORTHO05D003622 4.3e-19 98.2 88 62.5
TPR.G12557 Trifolium pratense HOM05D000753 ORTHO05D003622 4.3e-19 98.2 88 63.6
Eucgr.B03955 Eucalyptus grandis HOM05D000753 ORTHO05D003622 7.3e-19 97.4 90 58.9
ClCG04G007460 Citrullus lanatus HOM05D000753 ORTHO05D003622 1.6e-18 96.3 81 61.7
Aqoxy5G00334 Aquilegia oxysepala HOM05D000753 ORTHO05D003622 2.1e-18 95.9 84 59.5
Prupe.1G106200 Prunus persica HOM05D000753 ORTHO05D003622 2.1e-18 95.9 83 61.4
ClCG05G006840 Citrullus lanatus HOM05D000753 ORTHO05D003622 2.8e-18 95.5 82 61.0
QL06p014135 Quercus lobata HOM05D000753 ORTHO05D003622 2.8e-18 95.5 85 63.5
MELO3C003206.2 Cucumis melo HOM05D000753 ORTHO05D003622 3.6e-18 95.1 81 60.5
CsaV3_3G015490 Cucumis sativus L. HOM05D000753 ORTHO05D003622 3.6e-18 95.1 82 62.2
CsaV3_4G025800 Cucumis sativus L. HOM05D000753 ORTHO05D003622 4.8e-18 94.7 81 59.3
Nn6g35752 Nelumbo nucifera HOM05D000753 ORTHO05D003622 6.2e-18 94.4 85 56.5
MD13G1141000 Malus domestica HOM05D000753 ORTHO05D003622 8.1e-18 94.0 83 62.7
Lalb_Chr11g0073531 Lupinus albus HOM05D000753 ORTHO05D003622 1.1e-17 93.6 85 64.7
C05p49000 Brassica napus HOM05D000753 ORTHO05D003622 1.4e-17 93.2 49 91.8
Phvul.003G121200 Phaseolus vulgaris HOM05D000753 ORTHO05D003622 1.4e-17 93.2 86 59.3
Phvul.009G219500 Phaseolus vulgaris HOM05D000753 ORTHO05D003622 1.4e-17 93.2 88 58.0
Manes.03G211400 Manihot esculenta HOM05D000753 ORTHO05D003622 1.8e-17 92.8 90 56.7
Cfa015724 Carpinus fangiana HOM05D000753 ORTHO05D003622 2.4e-17 92.4 85 62.4
Sed0025915 Sechium edule HOM05D000753 ORTHO05D003622 2.4e-17 92.4 82 59.8
Medtr4g123900 Medicago truncatula HOM05D000753 ORTHO05D003622 3.1e-17 92.0 88 61.4
TWI09G0158 Tripterygium wilfordii HOM05D000753 ORTHO05D003622 4.0e-17 91.7 90 57.8
Lj6g0005825 Lotus japonicus HOM05D000753 ORTHO05D003622 5.3e-17 91.3 84 63.1
Glyma.09G078700 Glycine max HOM05D000753 ORTHO05D003622 6.9e-17 90.9 89 59.6
Glyma.13G120000 Glycine max HOM05D000753 ORTHO05D003622 6.9e-17 90.9 87 58.6
MD16G1137100 Malus domestica HOM05D000753 ORTHO05D003622 6.9e-17 90.9 83 61.4
Gohir.A09G067300 Gossypium hirsutum HOM05D000753 ORTHO05D003622 1.2e-16 90.1 84 58.3
Glyma.15G188900 Glycine max HOM05D000753 ORTHO05D003622 2.0e-16 89.4 89 58.4
Gohir.A01G036200 Gossypium hirsutum HOM05D000753 ORTHO05D003622 2.0e-16 89.4 82 57.3
RcHm_v2.0_Chr4g0427391 Rosa chinensis HOM05D000753 ORTHO05D003622 2.0e-16 89.4 86 59.3
Gohir.D01G023595 Gossypium hirsutum HOM05D000753 ORTHO05D003622 2.6e-16 89.0 82 57.3
Gorai.002G032000 Gossypium raimondii HOM05D000753 ORTHO05D003622 2.6e-16 89.0 82 57.3
Atru.chr4.3141 Acer truncatum HOM05D000753 ORTHO05D003622 3.4e-16 88.6 83 57.8
VMungo1215G1179 Vigna mungo HOM05D000753 ORTHO05D003622 3.4e-16 88.6 89 57.3
FvH4_4g21460 Fragaria vesca HOM05D000753 ORTHO05D003622 4.5e-16 88.2 86 57.0
FAN07G0388 Fragaria x ananassa HOM05D000753 ORTHO05D003622 5.8e-16 87.8 85 56.5
FAN17G2049 Fragaria x ananassa HOM05D000753 ORTHO05D003622 5.8e-16 87.8 85 56.5
DCAR_030422 Daucus carota HOM05D000753 ORTHO05D003622 7.6e-16 87.4 89 55.1
Gohir.D09G066900 Gossypium hirsutum HOM05D000753 ORTHO05D003622 9.9e-16 87.0 84 56.0
Gorai.006G081400 Gossypium raimondii HOM05D000753 ORTHO05D003622 9.9e-16 87.0 84 56.0
Dinv29515 Davidia involucrata HOM05D000753 ORTHO05D003622 1.3e-15 86.7 87 57.5
Actinidia18504 Actinidia chinensis HOM05D000753 ORTHO05D003622 1.7e-15 86.3 89 55.1
Glyma.17G040300 Glycine max HOM05D000753 ORTHO05D003622 1.7e-15 86.3 88 56.8
HanXRQChr09g0245821 Helianthus annuus HOM05D000753 ORTHO05D003622 1.7e-15 86.3 91 51.6
CiPaw.01G129900 Carya illinoinensis HOM05D000753 ORTHO05D003622 2.2e-15 85.9 85 61.2
Potri.010G001700 Populus trichocarpa HOM05D000753 ORTHO05D003622 2.2e-15 85.9 85 55.3
AUR62039325 Chenopodium quinoa HOM05D000753 ORTHO05D003622 2.9e-15 85.5 94 53.2
Eucgr.H04120 Eucalyptus grandis HOM05D000753 ORTHO05D003622 2.9e-15 85.5 85 56.5
Lalb_Chr08g0233031 Lupinus albus HOM05D000753 ORTHO05D003622 2.9e-15 85.5 85 63.5
VMungo1309G2024 Vigna mungo HOM05D000753 ORTHO05D003622 2.9e-15 85.5 89 56.2
TAR365G0528 Trochodendron aralioides HOM05D000753 ORTHO05D010249 4.9e-15 84.7 94 52.1
TAR365G0537 Trochodendron aralioides HOM05D000753 ORTHO05D003622 4.9e-15 84.7 95 52.6
GSVIVG01017682001 Vitis vinifera HOM05D000753 ORTHO05D003622 6.4e-15 84.3 94 54.3
AUR62022452 Chenopodium quinoa HOM05D000753 ORTHO05D003622 8.4e-15 84.0 94 53.2
Lj6C700T8 Lonicera japonica HOM05D000753 ORTHO05D003622 8.4e-15 84.0 91 53.8
Rhsim04G0247900 Rhododendron simsii HOM05D000753 ORTHO05D003622 1.4e-14 83.2 87 57.5
Sabra10G0001400 Salix brachista HOM05D000753 ORTHO05D003622 1.4e-14 83.2 85 54.1
CANSAT78G2121 Cannabis sativa HOM05D000753 ORTHO05D003622 1.9e-14 82.8 82 59.8
Ah.05g168870 Amaranthus hybridus HOM05D000753 ORTHO05D003622 2.4e-14 82.4 86 58.1
CSS0042988 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 2.4e-14 82.4 89 52.8
EL10Ac1g01769 Beta vulgaris HOM05D000753 ORTHO05D003622 3.2e-14 82.0 93 53.8
Sc10g0008510 Simmondsia chinensis HOM05D000753 ORTHO05D003622 3.2e-14 82.0 90 52.2
Hund26619 Selenicereus undatus HOM05D000753 ORTHO05D003622 7.1e-14 80.9 92 48.9
Oeu037625.1 Olea europaea HOM05D000753 ORTHO05D003622 9.3e-14 80.5 82 53.7
COL.COLO4_34522 Corchorus olitorius HOM05D000753 ORTHO05D017534 1.2e-13 80.1 69 58.0
Peaxi162Scf00166g00427 Petunia axillaris HOM05D000753 ORTHO05D003622 1.2e-13 80.1 90 53.3
CSS0036063 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 1.6e-13 79.7 92 51.1
DCAR_023400 Daucus carota HOM05D000753 ORTHO05D003622 2.1e-13 79.3 90 50.0
ECA246G1535 Erigeron canadensis HOM05D000753 ORTHO05D003622 2.1e-13 79.3 89 53.9
Dinv12092 Davidia involucrata HOM05D000753 ORTHO05D003622 2.7e-13 79.0 87 52.9
vmacro02364 Vaccinium macrocarpon HOM05D000753 ORTHO05D003622 2.7e-13 79.0 111 44.1
ATR1136G027 Amborella trichopoda HOM05D000753 ORTHO05D003622 3.5e-13 78.6 87 52.9
Solyc02g088900.3 Solanum lycopersicum HOM05D000753 ORTHO05D003622 3.5e-13 78.6 88 52.3
Actinidia06398 Actinidia chinensis HOM05D000753 ORTHO05D003622 4.6e-13 78.2 89 51.7
DCAR_026950 Daucus carota HOM05D000753 ORTHO05D003622 1.3e-12 76.6 114 40.4
Dinv33163 Davidia involucrata HOM05D000753 ORTHO05D003622 1.3e-12 76.6 90 51.1
Lsat_1_v5_gn_1_39900 Lactuca sativa HOM05D000753 ORTHO05D003622 1.3e-12 76.6 84 51.2
Nitab4.5_0007320g0030 Nicotiana tabacum HOM05D000753 ORTHO05D003622 1.3e-12 76.6 90 52.2
Sopen02g033590 Solanum pennellii HOM05D000753 ORTHO05D003622 1.3e-12 76.6 88 51.1
CSS0038867 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 1.8e-12 76.3 90 48.9
SGA_v2.0_scaffold227G43199 Striga asiatica HOM05D000753 ORTHO05D003622 1.8e-12 76.3 89 46.1
PSO210G5412 Papaver somniferum HOM05D000753 ORTHO05D003622 3.0e-12 75.5 90 47.8
PSO832G0943 Papaver somniferum HOM05D000753 ORTHO05D003622 3.0e-12 75.5 90 47.8
CAN.G497.100 Capsicum annuum HOM05D000753 ORTHO05D003622 3.9e-12 75.1 90 51.1
Hma1.2p1_1160F.1_g262520 Hydrangea macrophylla HOM05D000753 ORTHO05D003622 3.9e-12 75.1 83 54.2
Rhsim13G0000100 Rhododendron simsii HOM05D000753 ORTHO05D003622 3.9e-12 75.1 86 50.0
Solyc02g066910.3 Solanum lycopersicum HOM05D000753 ORTHO05D003622 3.9e-12 75.1 85 52.9
Sopen02g016100 Solanum pennellii HOM05D000753 ORTHO05D003622 3.9e-12 75.1 85 52.9
CiPaw.08G084100 Carya illinoinensis HOM05D000753 ORTHO05D003622 5.1e-12 74.7 93 47.3
Potri.008G214300 Populus trichocarpa HOM05D000753 ORTHO05D003622 5.1e-12 74.7 85 54.1
CAN.G398.22 Capsicum annuum HOM05D000753 ORTHO05D003622 6.7e-12 74.3 85 51.8
Cc01_g17330 Coffea canephora HOM05D000753 ORTHO05D003622 6.7e-12 74.3 91 48.4
DCAR_002549 Daucus carota HOM05D000753 ORTHO05D003622 6.7e-12 74.3 80 47.5
Nitab4.5_0003841g0030 Nicotiana tabacum HOM05D000753 ORTHO05D003622 1.1e-11 73.6 90 51.1
MBI06_g17220_MAGBIO Magnolia biondii HOM05D000753 ORTHO05D003622 1.5e-11 73.2 90 48.9
Aqoxy2G00409 Aquilegia oxysepala HOM05D000753 ORTHO05D003622 1.9e-11 72.8 78 52.6
FAN12G3361 Fragaria x ananassa HOM05D000753 ORTHO05D003622 4.3e-11 71.6 89 46.1
CiPaw.07G124100 Carya illinoinensis HOM05D000753 ORTHO05D003622 5.6e-11 71.2 90 46.7
CDE07G1952 Ceratophyllum demersum HOM05D000753 ORTHO05D003622 5.6e-11 71.2 90 51.1
CSS0017685 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 7.4e-11 70.9 93 47.3
Oeu016619.1 Olea europaea HOM05D000753 ORTHO05D003622 7.4e-11 70.9 92 44.6
SGA_v2.0_scaffold449G51792 Striga asiatica HOM05D000753 ORTHO05D003622 7.4e-11 70.9 90 44.4
unitig_26.g10602 Utricularia gibba HOM05D000753 ORTHO05D003622 7.4e-11 70.9 85 49.4
PGSC0003DMG400001459 Solanum tuberosum HOM05D000753 ORTHO05D003622 9.6e-11 70.5 75 56.0
CDE04G3027 Ceratophyllum demersum HOM05D000753 ORTHO05D003622 1.3e-10 70.1 90 52.2
Dinv18026 Davidia involucrata HOM05D000753 ORTHO05D003622 1.3e-10 70.1 80 56.2
PGSC0003DMG400025156 Solanum tuberosum HOM05D000753 ORTHO05D003622 2.1e-10 69.3 85 49.4
Migut.N00004 Erythranthe guttata HOM05D000753 ORTHO05D003622 4.8e-10 68.2 76 48.7
Haze_00774 Corylus avellana HOM05D000753 ORTHO05D003622 6.2e-10 67.8 147 36.1
TAR633G1520 Trochodendron aralioides HOM05D000753 ORTHO05D003622 1.1e-09 67.0 71 52.1
GSVIVG01028211001 Vitis vinifera HOM05D000753 ORTHO05D003622 1.4e-09 66.6 93 48.4
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 5.3e-09 64.7 70 52.9
arahy.Tifrunner.gnm1.ann1.B6KC6C Arachis hypogaea HOM05D000753 ORTHO05D003622 2.0e-08 62.8 55 54.5
DCAR_012306 Daucus carota HOM05D000753 ORTHO05D003622 2.6e-08 62.4 80 48.8
Zm00001eb054220 Zea mays HOM05D000753 ORTHO05D003622 1.3e-07 60.1 87 46.0
arahy.Tifrunner.gnm1.ann1.XT3RX0 Arachis hypogaea HOM05D000753 ORTHO05D003622 1.7e-07 59.7 55 50.9
MSTRG.9728 Avicennia marina HOM05D000753 ORTHO05D003622 2.2e-07 59.3 72 45.8
Migut.G01157 Erythranthe guttata HOM05D000753 ORTHO05D003622 2.2e-07 59.3 85 42.4
Lj1g0018517 Lotus japonicus HOM05D000753 ORTHO05D003622 6.4e-07 57.8 74 47.3
SEGI_24452 Sequoiadendron giganteum HOM05D000753 ORTHO05D003622 6.4e-07 57.8 80 47.5
Lj1A9G43 Lonicera japonica HOM05D000753 ORTHO05D003622 8.4e-07 57.4 72 48.6
Lalb_Chr18g0046481 Lupinus albus HOM05D000753 ORTHO05D003622 8.4e-07 57.4 75 46.7
vmacro08008 Vaccinium macrocarpon HOM05D000753 ORTHO05D003622 3.2e-06 55.5 84 45.2
Glyma.19G220400 Glycine max HOM05D000753 ORTHO05D003622 5.5e-06 54.7 73 45.2
Nitab4.5_0000212g0260 Nicotiana tabacum HOM05D000753 ORTHO05D003622 7.1e-06 54.3 44 61.4


User provided reference genes

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