Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 4.8e-111 404.4 195 100.0
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 2.6e-101 372.1 188 96.8
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 9.7e-96 353.6 190 93.2
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 2.7e-85 318.9 186 84.4
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 3.6e-82 308.5 189 82.5
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 3.3e-67 258.8 189 71.4
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 3.3e-67 258.8 189 71.4
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 2.1e-66 256.1 189 70.4
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 2.1e-66 256.1 189 70.4
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.8e-65 253.1 190 67.9
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 4.0e-65 251.9 176 72.2
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 4.9e-63 245.0 176 71.6
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 1.2e-61 240.4 190 64.2
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 1.2e-61 240.4 190 64.2
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 5.0e-60 235.0 190 63.7
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 1.5e-59 233.4 190 63.7
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 5.6e-59 231.5 193 65.3
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 4.0e-57 225.3 192 64.1
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 8.3e-55 217.6 185 62.7
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 9.2e-54 214.2 192 62.0
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 5.6e-51 204.9 194 56.2
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 1.4e-49 200.3 181 57.5
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 2.3e-49 199.5 137 68.6
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 3.1e-49 199.1 191 57.6
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.1e-46 190.7 191 52.9
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.1e-46 190.7 181 54.1
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 1.3e-36 157.1 99 69.7
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 1.3e-36 157.1 184 48.9
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 2.3e-36 156.4 179 48.6
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 5.6e-35 151.8 178 50.0
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 1.2e-34 150.6 175 51.4
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 4.7e-34 148.7 176 53.4
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.8e-33 146.7 188 46.3
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 6.9e-33 144.8 187 45.5
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 6.9e-33 144.8 188 45.7
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 2.0e-32 143.3 168 49.4
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.3e-31 140.6 173 52.6
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.3e-31 140.6 173 52.6
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 2.2e-31 139.8 198 42.9
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 2.2e-31 139.8 163 50.3
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 3.2e-30 136.0 181 45.3
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 4.2e-30 135.6 193 44.6
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 5.4e-30 135.2 183 44.3
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 4.6e-29 132.1 157 49.0
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 1.3e-28 130.6 180 43.9
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 2.5e-27 126.3 167 43.7
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 3.3e-27 125.9 189 40.2
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 4.3e-27 125.6 191 44.0
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 4.3e-27 125.6 191 44.0
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.3e-26 124.0 188 43.1
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 1.6e-26 123.6 180 40.6
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 6.2e-26 121.7 162 46.3
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 8.1e-26 121.3 184 39.1
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 1.1e-25 120.9 179 41.3
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 1.4e-25 120.6 188 40.4
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 1.4e-25 120.6 181 41.4
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 5.3e-25 118.6 166 45.8
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 1.5e-24 117.1 190 38.9
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 2.6e-24 116.3 193 37.3
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 2.6e-24 116.3 162 41.4
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 2.6e-24 116.3 199 39.2
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 5.8e-24 115.2 177 41.2
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 5.8e-24 115.2 190 37.4
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 2.2e-23 113.2 157 42.0
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 2.2e-23 113.2 157 42.0
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 6.4e-23 111.7 183 42.1
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 6.4e-23 111.7 168 42.3
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 8.4e-23 111.3 168 39.3
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 8.4e-23 111.3 161 42.9
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.1e-22 110.9 179 39.1
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 1.1e-22 110.9 189 38.1
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.1e-22 110.9 177 39.0
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.4e-22 110.5 159 41.5
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.9e-22 110.2 173 37.6
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 1.9e-22 110.2 173 37.6
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.9e-22 110.2 173 38.2
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 3.2e-22 109.4 159 43.4
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 7.1e-22 108.2 178 38.8
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 9.3e-22 107.8 171 40.9
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 9.3e-22 107.8 178 40.4
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 9.3e-22 107.8 170 41.8
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 9.3e-22 107.8 188 36.7
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 1.2e-21 107.5 187 36.9
BcaC07g41877 Brassica carinata HOM05D003268 ORTHO05D003719 1.6e-21 107.1 190 43.7
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 1.6e-21 107.1 181 42.0
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 3.5e-21 105.9 183 38.8
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 6.0e-21 105.1 162 40.1
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 7.9e-21 104.8 173 39.9
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 7.9e-21 104.8 174 39.1
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.3e-20 104.0 163 40.5
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 1.3e-20 104.0 176 38.1
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 1.8e-20 103.6 166 38.0
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 1.8e-20 103.6 183 37.7
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 3.0e-20 102.8 175 38.3
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 3.0e-20 102.8 191 35.1
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 3.0e-20 102.8 196 35.2
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 3.9e-20 102.4 169 37.9
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 3.9e-20 102.4 173 38.7
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 3.9e-20 102.4 182 35.7
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 3.9e-20 102.4 193 39.9
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 5.1e-20 102.1 173 38.7
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 5.1e-20 102.1 149 43.6
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 6.7e-20 101.7 179 36.3
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 1.1e-19 100.9 204 35.3
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.5e-19 100.5 164 39.6
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.5e-19 100.5 205 33.7
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 1.9e-19 100.1 174 36.2
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 2.5e-19 99.8 192 34.4
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.5e-19 99.8 166 36.1
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 4.3e-19 99.0 185 36.2
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 4.3e-19 99.0 185 36.2
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 5.6e-19 98.6 161 36.6
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 7.4e-19 98.2 161 39.1
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 7.4e-19 98.2 162 39.5
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 9.6e-19 97.8 158 36.1
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 9.6e-19 97.8 158 36.1
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.1e-18 96.7 185 37.3
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.1e-18 96.7 166 34.9
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 2.8e-18 96.3 176 36.9
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 6.2e-18 95.1 177 33.3
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 1.1e-17 94.4 164 35.4
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 4.0e-17 92.4 167 37.7
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 1.2e-16 90.9 174 33.3
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 1.5e-16 90.5 162 35.8
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.0e-16 90.1 191 31.9
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 2.0e-16 90.1 165 35.8
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 4.5e-16 89.0 151 36.4
Aa31LG1G5600 Aethionema arabicum HOM05D003268 ORTHO05D003719 5.8e-16 88.6 117 43.6
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 1.3e-15 87.4 171 33.9
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 1.7e-15 87.0 189 33.3
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.7e-15 87.0 159 34.0
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 1.7e-15 87.0 178 33.1
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 6.4e-15 85.1 175 32.6
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 8.4e-15 84.7 159 35.8
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 8.4e-15 84.7 151 32.5
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 8.4e-15 84.7 151 32.5
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 1.1e-14 84.3 176 34.1
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 1.1e-14 84.3 161 36.0
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.4e-14 84.0 143 37.1
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 1.4e-14 84.0 160 35.6
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 1.4e-14 84.0 153 35.9
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 1.9e-14 83.6 193 32.6
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.4e-14 83.2 151 32.5
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 3.2e-14 82.8 198 30.8
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 3.2e-14 82.8 168 35.1
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 5.5e-14 82.0 152 33.6
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 9.3e-14 81.3 191 31.4
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 9.3e-14 81.3 141 36.2
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 1.2e-13 80.9 167 33.5
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 1.6e-13 80.5 151 33.8
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.6e-13 80.5 130 37.7
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 1.6e-13 80.5 130 36.9
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 2.7e-13 79.7 167 34.7
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 3.5e-13 79.3 166 30.1
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 6.0e-13 78.6 164 32.9
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.8e-12 77.0 174 35.6
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 2.3e-12 76.6 125 44.0
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 3.9e-12 75.9 164 34.1
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 3.9e-12 75.9 164 34.1
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 5.1e-12 75.5 161 35.4
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 5.1e-12 75.5 131 34.4
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 6.7e-12 75.1 169 32.5
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 8.7e-12 74.7 164 32.9
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 1.9e-11 73.6 166 31.3
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 3.3e-11 72.8 167 32.9
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 3.3e-11 72.8 175 33.1
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 5.6e-11 72.0 179 32.4
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 7.4e-11 71.6 162 32.7
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 9.6e-11 71.2 161 34.2
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 2.8e-10 69.7 138 34.8
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 3.7e-10 69.3 179 34.6
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 6.2e-10 68.6 170 32.9
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 8.2e-10 68.2 78 39.7
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 1.1e-09 67.8 170 30.6
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 1.1e-09 67.8 170 30.6
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 1.1e-09 67.8 170 30.6
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.8e-09 67.0 70 48.6
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 5.8e-08 62.0 166 30.7
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 2.2e-07 60.1 182 26.4
HanXRQChr07g0197201 Helianthus annuus HOM05D003268 ORTHO05D003719 2.2e-07 60.1 147 29.9
Os05g0277200 Oryza sativa ssp. japonica HOM05D003268 ORTHO05D003719 8.4e-07 58.2 183 26.8
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 1.4e-06 57.4 169 29.6
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 3.2e-06 56.2 169 29.6


User provided reference genes

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