Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38483 Brassica carinata HOM05D007729 ORTHO05D009724 4.2e-295 1017.3 524 100.0
C08p12530 Brassica napus HOM05D007729 ORTHO05D009724 1.8e-277 958.7 538 93.7
BolC8t48891H Brassica oleracea HOM05D007729 ORTHO05D009724 5.5e-271 937.2 537 92.2
A08p34750 Brassica napus HOM05D007729 ORTHO05D009724 3.1e-266 921.4 534 90.8
BraA08t35386Z Brassica rapa HOM05D007729 ORTHO05D009724 5.9e-265 917.1 537 89.9
Sp1g07780 Schrenkiella parvula HOM05D007729 ORTHO05D009724 9.5e-231 803.5 539 79.2
Thhalv10007209m.g Eutrema salsugineum HOM05D007729 ORTHO05D009724 1.5e-223 779.6 566 74.2
AL1G19670 Arabidopsis lyrata HOM05D007729 ORTHO05D009724 1.1e-218 763.5 542 74.4
Carub.0001s0852 Capsella rubella HOM05D007729 ORTHO05D009724 1.3e-216 756.5 539 74.8
Aa31LG1G6090 Aethionema arabicum HOM05D007729 ORTHO05D009724 5.4e-210 734.6 535 73.1
AT1G09195 Arabidopsis thaliana HOM05D007729 ORTHO05D009724 3.8e-203 711.8 500 75.0
THA.LOC104805912 Tarenaya hassleriana HOM05D007729 ORTHO05D009724 1.3e-190 670.2 529 67.5
CARHR009150 Cardamine hirsuta HOM05D007729 ORTHO05D009724 3.4e-151 539.3 366 78.4
Cpa.g.sc48.137 Carica papaya HOM05D007729 ORTHO05D009724 5.9e-140 501.9 554 54.0
Potri.005G020100 Populus trichocarpa HOM05D007729 ORTHO05D009724 2.8e-137 493.0 537 53.1
HanXRQChr09g0268291 Helianthus annuus HOM05D007729 ORTHO05D009724 2.6e-135 486.5 533 51.2
Sabra05G0026100 Salix brachista HOM05D005361 ORTHO05D006518 2.2e-134 483.4 536 51.1
Ciclev10000704m.g Citrus clementina HOM05D007729 ORTHO05D009724 4.9e-134 482.3 554 51.4
TAR365G0479 Trochodendron aralioides HOM05D007729 ORTHO05D009724 3.0e-131 473.0 546 52.2
Dinv24421 Davidia involucrata HOM05D007729 ORTHO05D009724 3.9e-131 472.6 543 51.7
Atru.chr2.143 Acer truncatum HOM05D007729 ORTHO05D009724 5.6e-130 468.8 566 50.5
Hma1.2p1_1320F.1_g275420 Hydrangea macrophylla HOM05D007729 ORTHO05D009724 1.2e-129 467.6 499 54.1
ECA236G3528 Erigeron canadensis HOM05D007729 ORTHO05D009724 6.8e-128 461.8 534 50.2
Lj9A208G24 Lonicera japonica HOM05D007729 ORTHO05D009724 3.4e-127 459.5 525 50.5
Gorai.013G128200 Gossypium raimondii HOM05D007729 ORTHO05D009724 2.9e-126 456.4 540 51.7
Lsat_1_v5_gn_7_73440 Lactuca sativa HOM05D007729 ORTHO05D009724 3.7e-126 456.1 538 49.3
Gohir.D13G114300 Gossypium hirsutum HOM05D007729 ORTHO05D009724 6.4e-126 455.3 540 51.7
Manes.09G175100 Manihot esculenta HOM05D007729 ORTHO05D009724 1.4e-125 454.1 527 50.9
QL03p018088 Quercus lobata HOM05D007729 ORTHO05D009724 1.4e-125 454.1 542 50.6
Duzib177G0448 Durio zibethinus HOM05D007729 ORTHO05D009724 1.9e-125 453.8 564 48.6
Actinidia16844 Actinidia chinensis HOM05D007729 ORTHO05D009724 2.0e-124 450.3 551 50.6
Gohir.A13G111500 Gossypium hirsutum HOM05D007729 ORTHO05D009724 1.3e-123 447.6 540 50.4
CANSAT54G0579 Cannabis sativa HOM05D007729 ORTHO05D009724 3.0e-123 446.4 545 49.9
CSS0040240 Camellia sinensis var. sinensis HOM05D007729 ORTHO05D009724 7.3e-122 441.8 564 50.0
GSVIVG01031211001 Vitis vinifera HOM05D007729 ORTHO05D009724 1.1e-120 438.0 545 46.6
TWI56G1038 Tripterygium wilfordii HOM05D007729 ORTHO05D009724 2.3e-120 436.8 455 52.5
FvH4_6g07160 Fragaria vesca HOM05D007729 ORTHO05D009724 3.1e-120 436.4 513 50.7
RcHm_v2.0_Chr3g0456781 Rosa chinensis HOM05D007729 ORTHO05D009724 8.9e-120 434.9 547 48.1
FAN14G4369 Fragaria x ananassa HOM05D007729 ORTHO05D009724 3.4e-119 433.0 562 48.2
COL.COLO4_04132 Corchorus olitorius HOM05D007729 ORTHO05D009724 2.9e-118 429.9 542 47.6
Thecc.05G320400 Theobroma cacao HOM05D007729 ORTHO05D009724 6.4e-118 428.7 540 47.0
FAN05G4184 Fragaria x ananassa HOM05D007729 ORTHO05D009724 8.3e-118 428.3 557 47.8
Oeu053698.1 Olea europaea HOM05D007729 ORTHO05D009724 1.9e-117 427.2 510 50.0
Nn4g25665 Nelumbo nucifera HOM05D007729 ORTHO05D009724 2.1e-116 423.7 541 47.7
FAN09G4655 Fragaria x ananassa HOM05D007729 ORTHO05D009724 1.0e-115 421.4 562 47.7
Lalb_Chr02g0147931 Lupinus albus HOM05D007729 ORTHO05D009724 1.1e-114 417.9 491 51.3
Nitab4.5_0000368g0330 Nicotiana tabacum HOM05D007729 ORTHO05D009724 4.3e-114 416.0 549 46.3
SalBow7G3736 Salvia bowleyana HOM05D007729 ORTHO05D009724 2.1e-113 413.7 544 46.9
MSTRG.20396 Avicennia marina HOM05D007729 ORTHO05D009724 3.6e-113 412.9 544 46.5
Peaxi162Scf00673g00025 Petunia axillaris HOM05D007729 ORTHO05D009724 8.1e-113 411.8 539 46.0
Haze_04087 Corylus avellana HOM05D007729 ORTHO05D009724 1.8e-112 410.6 498 51.2
PGSC0003DMG400024735 Solanum tuberosum HOM05D007729 ORTHO05D009724 2.4e-112 410.2 550 45.5
Migut.B00991 Erythranthe guttata HOM05D007729 ORTHO05D009724 4.0e-112 409.5 553 45.8
vmacro01545 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 5.2e-112 409.1 514 49.2
Cc02_g34750 Coffea canephora HOM05D007729 ORTHO05D009724 1.2e-111 407.9 535 45.4
Sopen01g043770 Solanum pennellii HOM05D007729 ORTHO05D009724 2.0e-111 407.1 541 46.4
Solyc01g100260.4 Solanum lycopersicum HOM05D007729 ORTHO05D009724 3.4e-111 406.4 541 46.0
CAN.G1273.5 Capsicum annuum HOM05D007729 ORTHO05D009724 9.9e-111 404.8 552 44.6
MBI18_g24956_MAGBIO Magnolia biondii HOM05D007729 ORTHO05D009724 4.9e-110 402.5 551 46.1
Nitab4.5_0006072g0050 Nicotiana tabacum HOM05D007729 ORTHO05D009724 6.4e-110 402.1 573 44.9
PSO210G3025 Papaver somniferum HOM05D007729 ORTHO05D009724 2.4e-109 400.2 546 46.0
PGR031G2787 Punica granatum HOM05D007729 ORTHO05D009724 3.2e-109 399.8 546 47.6
DCAR_021068 Daucus carota HOM05D007729 ORTHO05D009724 6.0e-108 395.6 528 46.0
DCAR_021070 Daucus carota HOM05D007729 ORTHO05D009724 6.0e-108 395.6 528 46.0
PSO761G0658 Papaver somniferum HOM05D007729 ORTHO05D009724 3.9e-107 392.9 546 45.6
EL10Ac4g09861 Beta vulgaris HOM05D007729 ORTHO05D009724 1.6e-105 387.5 544 44.9
CDE12G0453 Ceratophyllum demersum HOM05D007729 ORTHO05D009724 1.2e-103 381.3 536 43.7
AUR62000694 Chenopodium quinoa HOM05D007729 ORTHO05D009724 1.6e-100 370.9 550 43.6
SGA_v2.0_scaffold53G19323 Striga asiatica HOM05D007729 ORTHO05D009724 1.3e-94 351.3 456 45.0
AUR62005264 Chenopodium quinoa HOM05D007729 ORTHO05D009724 1.7e-94 350.9 544 42.5
ATR0706G084 Amborella trichopoda HOM05D007729 ORTHO05D009724 2.1e-92 344.0 558 40.0
Prupe.6G315600 Prunus persica HOM05D007729 ORTHO05D009724 2.9e-86 323.6 378 49.2
Aqoxy2G02816 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 1.3e-83 314.7 359 50.7
SEGI_22290 Sequoiadendron giganteum HOM05D007729 ORTHO05D009724 2.9e-78 297.0 552 35.9
Sc16g0008910 Simmondsia chinensis HOM05D007729 ORTHO05D009724 2.3e-75 287.3 370 47.6
Duzib147G0321 Durio zibethinus HOM05D007729 ORTHO05D009724 9.7e-74 282.0 360 48.1
Hund21744 Selenicereus undatus HOM05D007729 ORTHO05D009724 1.8e-72 277.7 519 38.0
Pp3c6_24770 Physcomitrium patens HOM05D007729 ORTHO05D009724 5.9e-71 272.7 512 35.7
Pp3c5_5230 Physcomitrium patens HOM05D007729 ORTHO05D009724 1.0e-70 271.9 552 34.2
Atru.chr2.136 Acer truncatum HOM05D007729 ORTHO05D009724 1.9e-69 267.7 305 53.4
vmacro05864 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 9.3e-69 265.4 376 49.5
CARHR009140 Cardamine hirsuta HOM05D007729 ORTHO05D009724 6.1e-68 262.7 177 76.8
Pp3c27_4900 Physcomitrium patens HOM05D007729 ORTHO05D009724 4.5e-63 246.5 507 34.1
PRCOL_00006313 Prasinoderma coloniale HOM05D007729 ORTHO05D009724 3.4e-55 220.3 588 31.6
vmacro20072 Vaccinium macrocarpon HOM05D007729 ORTHO05D009724 4.7e-52 209.9 376 43.9
Haze_25193 Corylus avellana HOM05D007729 ORTHO05D009724 2.0e-39 167.9 183 55.7
Haze_15474 Corylus avellana HOM05D000683 ORTHO05D000507 2.3e-27 127.9 116 59.5
Aqoxy2G02815 Aquilegia oxysepala HOM05D007729 ORTHO05D009724 4.9e-25 120.2 155 46.5
Haze_25604 Corylus avellana HOM05D007729 ORTHO05D009724 5.6e-21 106.7 121 51.2
MD12G1208200 Malus domestica HOM05D007729 ORTHO05D009724 3.3e-13 80.9 122 42.6
CBR_g1071 Chara braunii HOM05D036030 ORTHO05D009724 9.2e-08 62.8 168 29.8


User provided reference genes

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