Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 3.5e-103 378.3 183 100.0
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 1.0e-86 323.6 183 89.6
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 2.3e-86 322.4 183 89.1
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 1.1e-85 320.1 183 88.5
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 9.5e-85 317.0 183 87.4
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 2.8e-84 315.5 183 87.4
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 2.8e-84 315.5 183 87.4
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 3.6e-84 315.1 183 87.4
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 4.7e-84 314.7 175 90.9
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 8.0e-84 313.9 174 91.4
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 8.9e-83 310.5 175 89.7
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 8.9e-83 310.5 183 85.2
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 1.2e-82 310.1 178 87.6
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.0e-82 309.3 179 87.7
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 2.2e-81 305.8 175 88.0
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 1.4e-80 303.1 175 86.9
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 1.4e-80 303.1 175 86.9
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.0e-78 297.0 183 82.0
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.0e-78 297.0 194 77.3
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 3.8e-78 295.0 183 82.5
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 5.0e-78 294.7 183 82.5
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 8.6e-78 293.9 183 82.0
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 8.6e-78 293.9 183 82.0
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 1.1e-77 293.5 183 81.4
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.5e-77 293.1 183 82.0
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.9e-77 292.7 183 80.9
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 2.5e-77 292.4 183 81.4
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 9.5e-77 290.4 183 80.9
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 9.5e-77 290.4 183 80.3
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 9.5e-77 290.4 183 79.8
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.2e-76 290.0 183 80.9
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 1.2e-76 290.0 183 79.8
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.2e-76 290.0 183 80.3
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 1.2e-76 290.0 183 80.3
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.6e-76 289.7 183 80.3
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.6e-76 289.7 183 80.3
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.6e-76 289.7 183 80.9
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 2.1e-76 289.3 183 79.8
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.1e-76 289.3 183 79.2
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 2.1e-76 289.3 183 79.8
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 2.8e-76 288.9 183 80.3
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 2.8e-76 288.9 183 79.8
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 3.6e-76 288.5 183 81.4
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 3.6e-76 288.5 183 81.4
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 4.7e-76 288.1 183 78.7
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 6.1e-76 287.7 183 79.8
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 8.0e-76 287.3 182 80.2
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.4e-75 286.6 183 79.2
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 1.4e-75 286.6 183 78.7
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 1.8e-75 286.2 183 78.1
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 2.3e-75 285.8 183 78.7
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 3.0e-75 285.4 183 78.7
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 4.0e-75 285.0 183 78.7
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 4.0e-75 285.0 183 78.7
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 4.0e-75 285.0 180 80.0
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 4.0e-75 285.0 183 78.7
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 4.0e-75 285.0 183 78.7
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 4.0e-75 285.0 183 79.2
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 5.2e-75 284.6 183 77.6
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 5.2e-75 284.6 180 79.4
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 5.2e-75 284.6 182 78.0
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 6.8e-75 284.3 183 77.6
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 6.8e-75 284.3 183 78.1
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 8.9e-75 283.9 183 78.1
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 8.9e-75 283.9 186 78.5
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 8.9e-75 283.9 180 80.0
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 8.9e-75 283.9 183 78.7
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 8.9e-75 283.9 179 79.9
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 1.2e-74 283.5 181 78.5
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-74 282.7 178 79.8
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.0e-74 282.7 183 77.6
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.4e-74 282.0 183 77.6
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 4.4e-74 281.6 183 77.0
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 7.5e-74 280.8 179 79.3
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 7.5e-74 280.8 181 77.3
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 7.5e-74 280.8 183 79.2
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.3e-73 280.0 183 77.6
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 1.3e-73 280.0 202 72.8
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 6.4e-73 277.7 177 79.7
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 4.1e-72 275.0 177 78.5
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 5.4e-72 274.6 179 77.7
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.6e-71 273.1 173 80.9
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 2.0e-71 272.7 198 72.2
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 4.6e-71 271.6 173 80.3
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 6.0e-71 271.2 183 76.5
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 6.0e-71 271.2 174 79.9
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.3e-70 270.0 183 74.9
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.7e-70 269.6 177 76.8
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 3.9e-70 268.5 177 78.0
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 5.0e-70 268.1 183 74.3
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.9e-69 266.2 174 76.4
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 3.6e-68 261.9 177 74.0
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 8.0e-68 260.8 156 85.9
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.3e-67 259.2 186 73.7
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 3.1e-67 258.8 179 76.0
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 1.3e-65 253.4 209 65.6
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 2.7e-63 245.7 153 78.4
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 3.5e-63 245.4 183 69.9
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 4.6e-63 245.0 140 86.4
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 2.3e-62 242.7 182 71.4
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.5e-61 239.2 156 78.2
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 3.6e-60 235.3 183 67.2
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 3.6e-60 235.3 158 77.8
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.4e-59 233.4 150 76.7
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.4e-59 233.4 183 66.1
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 1.8e-59 233.0 156 75.6
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.3e-57 226.9 178 66.9
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.3e-57 226.9 152 77.6
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 8.6e-54 214.2 115 87.8
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 3.3e-53 212.2 115 86.1
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.4e-51 206.8 185 56.8
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 7.6e-50 201.1 105 90.5
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.9e-49 198.4 105 88.6
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 1.9e-48 196.4 186 55.4
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 5.4e-48 194.9 177 53.1
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 2.1e-47 193.0 105 86.7
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.0e-46 190.7 105 85.7
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.7e-46 189.9 126 74.6
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 3.3e-45 185.7 92 97.8
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.7e-41 173.3 100 83.0
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 6.4e-41 171.4 156 60.3
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.1e-39 166.4 155 60.0
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.3e-38 163.7 92 84.8
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.9e-37 159.8 91 78.0
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 5.6e-37 158.3 86 84.9
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 7.3e-37 157.9 88 84.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 2.6e-34 149.4 180 50.6
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.3e-29 132.5 92 72.8
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.4e-27 126.3 130 52.3
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.2e-26 124.0 66 86.4
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 1.1e-16 90.9 88 56.8
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.2e-16 89.4 48 83.3
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 5.5e-16 88.6 81 61.7
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.9e-13 80.1 58 65.5
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.3e-13 79.0 53 75.5
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 4.3e-13 79.0 50 76.0
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 2.2e-09 66.6 182 29.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 5.0e-09 65.5 182 28.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.6e-07 60.5 182 26.9
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 4.6e-07 58.9 180 26.7


User provided reference genes

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