Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 1.9e-40 168.7 84 100.0
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 5.9e-34 147.1 75 97.3
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 3.0e-25 118.2 80 77.5
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 3.0e-25 118.2 80 77.5
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 3.0e-25 118.2 80 77.5
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 6.6e-25 117.1 80 76.2
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 8.6e-25 116.7 80 76.2
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.1e-24 116.3 80 76.2
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-24 116.3 80 77.5
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-24 116.3 80 77.5
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 1.1e-24 116.3 80 77.5
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.5e-24 115.9 80 76.2
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.9e-24 115.5 80 76.2
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.9e-24 115.5 80 76.2
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 2.5e-24 115.2 80 76.2
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 3.6e-23 111.3 88 69.3
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.8e-22 109.0 80 71.2
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 3.4e-21 104.8 80 67.5
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 3.4e-21 104.8 80 67.5
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 4.4e-21 104.4 80 67.5
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.2e-20 102.1 80 66.2
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.9e-20 101.7 80 66.2
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.1e-19 99.8 80 65.0
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.1e-19 99.8 80 65.0
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 2.4e-19 98.6 80 66.2
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.1e-19 97.1 80 63.8
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.1e-19 97.1 80 63.8
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 7.1e-19 97.1 80 63.8
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.1e-19 97.1 80 63.8
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 7.1e-19 97.1 80 65.0
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.2e-18 96.3 80 63.8
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-18 96.3 80 63.8
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 1.6e-18 95.9 80 62.5
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.6e-18 95.9 80 65.0
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.6e-18 95.9 80 65.0
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 2.1e-18 95.5 80 65.0
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 3.5e-18 94.7 80 62.5
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 3.5e-18 94.7 80 62.5
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 3.5e-18 94.7 80 63.8
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 6.0e-18 94.0 80 62.5
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 6.0e-18 94.0 80 60.0
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 7.8e-18 93.6 80 61.2
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 7.8e-18 93.6 80 62.5
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 1.0e-17 93.2 80 61.2
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 1.3e-17 92.8 88 61.4
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.7e-17 92.4 80 58.8
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 1.7e-17 92.4 80 61.2
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.3e-17 92.0 80 61.2
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.3e-17 92.0 80 61.2
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 2.3e-17 92.0 88 58.0
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 3.0e-17 91.7 80 62.5
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 3.0e-17 91.7 80 60.0
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 3.9e-17 91.3 80 62.5
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 3.9e-17 91.3 89 58.4
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 3.9e-17 91.3 80 58.8
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 3.9e-17 91.3 80 62.5
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 3.9e-17 91.3 80 60.0
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 5.1e-17 90.9 80 60.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 5.1e-17 90.9 80 60.0
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 5.1e-17 90.9 80 60.0
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.1e-17 90.9 80 60.0
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 5.1e-17 90.9 80 60.0
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 6.6e-17 90.5 80 60.0
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 6.6e-17 90.5 80 61.2
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 6.6e-17 90.5 80 60.0
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 8.6e-17 90.1 87 55.2
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 8.6e-17 90.1 80 58.8
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.1e-16 89.7 80 57.5
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.1e-16 89.7 80 58.8
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.5e-16 89.4 80 61.2
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.5e-16 89.4 80 56.2
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.9e-16 89.0 80 60.0
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.9e-16 89.0 80 60.0
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-16 89.0 80 60.0
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 2.5e-16 88.6 80 56.2
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 2.5e-16 88.6 80 56.2
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 3.3e-16 88.2 80 58.8
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 3.3e-16 88.2 80 56.2
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 3.3e-16 88.2 80 57.5
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 3.3e-16 88.2 80 56.2
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 4.3e-16 87.8 80 56.2
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 4.3e-16 87.8 80 57.5
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 4.3e-16 87.8 80 58.8
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 7.3e-16 87.0 80 56.2
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 7.3e-16 87.0 80 57.5
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 7.3e-16 87.0 80 57.5
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 7.3e-16 87.0 80 56.2
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 9.5e-16 86.7 80 56.2
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.2e-15 86.3 80 55.0
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.2e-15 86.3 80 57.5
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.6e-15 85.9 80 57.5
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 2.1e-15 85.5 80 55.0
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 2.1e-15 85.5 80 55.0
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 2.1e-15 85.5 81 54.3
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.8e-15 85.1 80 55.0
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.8e-15 85.1 80 55.0
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.8e-15 85.1 80 56.2
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 2.8e-15 85.1 80 53.8
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 3.6e-15 84.7 95 50.5
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 3.6e-15 84.7 80 56.2
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.4e-14 82.8 80 52.5
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 6.8e-14 80.5 80 51.2
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.3e-12 76.3 80 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.2e-12 75.5 80 47.5
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 8.4e-12 73.6 80 48.8
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.4e-11 72.8 80 48.8
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.9e-11 72.4 80 42.5
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 3.2e-11 71.6 122 38.5
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 5.4e-11 70.9 81 44.4
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 2.1e-10 68.9 81 50.6
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.1e-10 68.9 80 42.5
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 6.0e-10 67.4 75 52.0
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.0e-09 66.6 88 42.0
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.1e-08 63.2 80 41.2
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.1e-07 58.9 45 66.7
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 3.1e-06 55.1 53 54.7
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 6.9e-06 53.9 53 47.2


User provided reference genes

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