Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 4.9e-79 297.7 151 100.0
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 5.1e-52 208.0 104 100.0
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 4.5e-48 194.9 104 94.2
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 3.8e-47 191.8 104 93.3
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 2.4e-41 172.6 133 69.2
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 6.9e-41 171.0 135 68.9
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 7.6e-40 167.5 138 65.2
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.2e-39 166.0 138 64.5
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.9e-39 165.6 138 64.5
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 3.8e-39 165.2 138 63.8
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 3.8e-39 165.2 138 63.8
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 5.0e-39 164.9 133 65.4
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 3.2e-38 162.2 135 65.2
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 9.3e-38 160.6 135 63.7
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 9.3e-38 160.6 135 63.0
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.2e-37 160.2 135 64.4
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 3.0e-36 155.6 89 89.9
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 6.7e-36 154.5 138 63.8
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.5e-35 153.3 133 59.4
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 6.3e-34 147.9 133 57.9
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 4.5e-32 141.7 135 54.1
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 5.9e-32 141.4 142 53.5
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.3e-31 140.2 134 54.5
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.3e-31 140.2 135 53.3
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.3e-31 140.2 133 54.1
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.2e-31 139.4 133 56.4
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.9e-31 139.0 133 54.1
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.9e-31 139.0 133 54.1
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.9e-31 139.0 132 56.1
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.8e-31 138.7 132 56.1
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.8e-31 138.7 132 56.1
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 3.8e-31 138.7 133 55.6
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 3.8e-31 138.7 130 56.2
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.0e-31 138.3 132 56.1
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.0e-31 138.3 135 53.3
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 5.0e-31 138.3 135 53.3
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 5.0e-31 138.3 133 54.1
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 6.5e-31 137.9 135 53.3
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 6.5e-31 137.9 133 54.1
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 8.5e-31 137.5 141 53.2
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-30 137.1 132 56.1
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.1e-30 137.1 130 55.4
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.1e-30 137.1 133 52.6
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 1.9e-30 136.3 133 51.1
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.9e-30 136.3 135 53.3
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 2.5e-30 136.0 138 52.2
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 3.2e-30 135.6 133 53.4
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.2e-30 135.6 133 52.6
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 4.2e-30 135.2 128 53.1
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 4.2e-30 135.2 133 54.9
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 4.2e-30 135.2 144 50.7
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 5.5e-30 134.8 142 52.8
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 7.2e-30 134.4 130 53.8
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 7.2e-30 134.4 135 51.9
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 9.4e-30 134.0 130 52.3
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 9.4e-30 134.0 154 49.4
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 9.4e-30 134.0 134 53.0
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 1.2e-29 133.7 135 51.9
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 1.2e-29 133.7 133 51.1
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.2e-29 133.7 133 51.9
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.6e-29 133.3 142 50.7
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.7e-29 132.5 138 51.4
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 2.7e-29 132.5 133 50.4
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 4.6e-29 131.7 142 52.1
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 7.9e-29 131.0 138 51.4
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.0e-28 130.6 134 51.5
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.0e-28 130.6 138 49.3
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.4e-28 130.2 82 68.3
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.4e-28 130.2 133 49.6
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 1.8e-28 129.8 133 50.4
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 2.3e-28 129.4 133 48.9
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 2.3e-28 129.4 133 51.9
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 3.0e-28 129.0 133 49.6
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 3.0e-28 129.0 133 50.4
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 3.0e-28 129.0 138 50.0
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 3.0e-28 129.0 133 48.9
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.0e-28 129.0 133 51.1
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.9e-28 128.6 133 51.1
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 3.9e-28 128.6 133 50.4
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 5.1e-28 128.3 133 49.6
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 6.7e-28 127.9 142 48.6
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 6.7e-28 127.9 133 50.4
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 6.7e-28 127.9 89 65.2
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 8.8e-28 127.5 131 51.9
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 8.8e-28 127.5 133 49.6
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 2.6e-27 125.9 135 51.1
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 2.6e-27 125.9 131 51.9
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 2.6e-27 125.9 135 48.9
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 3.3e-27 125.6 133 48.9
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 4.4e-27 125.2 133 47.4
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 5.7e-27 124.8 133 47.4
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.4e-27 124.4 88 64.8
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 9.7e-27 124.0 138 48.6
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 1.7e-26 123.2 133 50.4
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 2.8e-26 122.5 133 48.1
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 3.7e-26 122.1 133 48.1
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 3.7e-26 122.1 133 48.1
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 4.8e-26 121.7 131 48.9
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 6.3e-26 121.3 99 59.6
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 8.2e-26 120.9 98 60.2
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.8e-25 119.8 98 59.2
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.1e-25 119.0 133 45.1
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 4.1e-25 118.6 88 61.4
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 9.1e-25 117.5 133 48.1
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.0e-24 116.3 133 46.6
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 3.4e-24 115.5 137 46.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.3e-23 113.6 125 48.0
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 3.2e-22 109.0 81 58.0
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.7e-21 105.9 139 39.6
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 4.7e-21 105.1 139 42.4
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.8e-20 103.2 144 47.9
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.6e-19 99.4 136 38.2
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.7e-18 96.7 133 44.4
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.4e-17 93.6 146 39.0
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 7.0e-17 91.3 134 36.6
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 9.1e-17 90.9 133 38.3
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.2e-16 90.5 84 46.4
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.6e-16 90.1 79 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.2e-15 86.3 133 35.3
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 7.2e-14 81.3 100 44.0
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.2e-11 73.9 123 40.7
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 2.8e-10 69.3 76 38.2
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 2.8e-10 69.3 79 44.3
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 8.2e-10 67.8 39 74.4
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 5.3e-09 65.1 50 60.0
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.6e-08 63.5 39 66.7
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.5e-06 57.0 33 72.7
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 4.2e-06 55.5 75 30.7
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 4.2e-06 55.5 75 30.7


User provided reference genes

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