Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 7.1e-29 129.8 61 100.0
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.3e-17 92.4 51 82.4
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.6e-17 92.0 51 80.4
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.6e-17 92.0 51 80.4
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 1.6e-17 92.0 51 80.4
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 2.8e-17 91.3 51 80.4
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.8e-17 91.3 51 80.4
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.8e-17 91.3 51 80.4
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 6.3e-17 90.1 51 78.4
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 6.3e-17 90.1 51 76.5
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 6.3e-17 90.1 51 78.4
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.1e-16 89.4 51 78.4
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 4.1e-16 87.4 51 74.5
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 4.1e-16 87.4 51 78.4
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 4.1e-16 87.4 51 78.4
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 5.3e-16 87.0 51 72.5
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 9.0e-16 86.3 51 78.4
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 9.0e-16 86.3 51 78.4
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.2e-15 85.9 51 72.5
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.7e-14 82.0 51 70.6
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 7.9e-12 73.2 51 66.7
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 6.7e-11 70.1 57 54.4
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 6.7e-11 70.1 57 54.4
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.0e-10 68.6 57 50.9
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 4.4e-10 67.4 57 45.6
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 9.7e-10 66.2 57 49.1
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.3e-09 65.9 51 54.9
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.7e-09 65.5 51 45.1
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.8e-09 64.7 57 47.4
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.8e-09 64.7 57 50.9
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.8e-09 64.7 57 47.4
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.8e-09 64.7 57 47.4
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.8e-09 63.9 57 47.4
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 4.8e-09 63.9 57 45.6
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 4.8e-09 63.9 57 45.6
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 4.8e-09 63.9 57 45.6
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 4.8e-09 63.9 57 49.1
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 4.8e-09 63.9 57 45.6
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 4.8e-09 63.9 57 45.6
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 6.3e-09 63.5 57 42.1
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 6.3e-09 63.5 47 55.3
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 6.3e-09 63.5 57 45.6
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 8.2e-09 63.2 57 45.6
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 8.2e-09 63.2 57 47.4
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 8.2e-09 63.2 57 45.6
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 8.2e-09 63.2 57 47.4
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 8.2e-09 63.2 57 42.1
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.1e-08 62.8 55 49.1
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.1e-08 62.8 57 47.4
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.4e-08 62.4 57 47.4
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 1.4e-08 62.4 58 55.2
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.8e-08 62.0 57 45.6
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.8e-08 62.0 57 43.9
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.4e-08 61.6 57 47.4
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 2.4e-08 61.6 57 45.6
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.4e-08 61.6 57 43.9
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 3.1e-08 61.2 57 45.6
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.1e-08 61.2 57 45.6
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 4.1e-08 60.8 57 40.4
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 4.1e-08 60.8 57 43.9
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 4.1e-08 60.8 57 43.9
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.1e-08 60.8 57 43.9
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 5.3e-08 60.5 57 43.9
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 5.3e-08 60.5 57 43.9
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 5.3e-08 60.5 57 43.9
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 5.3e-08 60.5 57 43.9
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.9e-08 60.1 57 42.1
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 6.9e-08 60.1 57 45.6
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 6.9e-08 60.1 57 45.6
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 6.9e-08 60.1 51 43.1
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 6.9e-08 60.1 51 43.1
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.9e-08 60.1 57 43.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.9e-08 60.1 57 43.9
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.9e-08 60.1 57 43.9
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 6.9e-08 60.1 51 43.1
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 9.1e-08 59.7 51 45.1
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 9.1e-08 59.7 51 45.1
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 9.1e-08 59.7 51 60.8
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 9.1e-08 59.7 51 43.1
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 9.1e-08 59.7 51 43.1
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 9.1e-08 59.7 43 58.1
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 9.1e-08 59.7 51 43.1
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.2e-07 59.3 57 43.9
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.2e-07 59.3 57 43.9
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.2e-07 59.3 51 41.2
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.2e-07 59.3 51 43.1
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.2e-07 59.3 51 43.1
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.2e-07 59.3 57 43.9
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 1.2e-07 59.3 57 43.9
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.2e-07 59.3 51 47.1
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.5e-07 58.9 51 45.1
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.5e-07 58.9 57 45.6
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.5e-07 58.9 57 45.6
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.5e-07 58.9 57 45.6
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.5e-07 58.9 57 45.6
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.5e-07 58.9 44 52.3
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.5e-07 58.9 51 41.2
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.5e-07 58.9 57 42.1
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.5e-07 58.9 57 42.1
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.5e-07 58.9 57 40.4
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 2.0e-07 58.5 57 40.4
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.0e-07 58.5 44 52.3
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 2.6e-07 58.2 51 43.1
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.6e-07 58.2 51 43.1
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.6e-07 58.2 57 42.1
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.5e-07 57.4 57 38.6
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.5e-07 57.4 53 47.2
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.9e-07 57.0 57 38.6
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 7.7e-07 56.6 57 42.1
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.3e-06 55.8 56 41.1
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.3e-06 55.8 59 44.1
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.3e-06 55.8 57 38.6
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.7e-06 55.5 47 46.8
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.8e-06 54.3 47 44.7
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.8e-06 54.3 47 42.6
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 6.5e-06 53.5 51 45.1
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 6.5e-06 53.5 57 40.4
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 8.5e-06 53.1 47 48.9
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 8.5e-06 53.1 47 48.9


User provided reference genes

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