Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 1.8e-76 289.3 153 100.0
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 1.8e-76 289.3 153 100.0
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 2.5e-70 268.9 154 96.1
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 1.2e-53 213.4 148 79.1
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 1.6e-53 213.0 150 78.7
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 1.6e-53 213.0 150 78.7
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 2.1e-53 212.6 149 78.5
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 1.8e-52 209.5 148 77.7
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 1.8e-52 209.5 148 77.7
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 4.0e-52 208.4 148 77.0
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 4.0e-52 208.4 148 77.0
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.2e-51 206.8 148 77.7
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 4.4e-51 204.9 149 75.8
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 9.8e-51 203.8 149 75.2
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 9.8e-51 203.8 149 75.2
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 2.8e-50 202.2 149 74.5
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.5e-46 189.9 150 71.3
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 4.2e-46 188.3 146 71.9
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 1.1e-41 173.7 153 70.6
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 2.4e-41 172.6 146 65.8
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 7.5e-35 151.0 143 55.9
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 6.4e-34 147.9 141 56.7
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.2e-32 143.7 140 55.0
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 1.2e-32 143.7 142 53.5
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 1.2e-32 143.7 142 53.5
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 1.2e-32 143.7 156 51.9
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 2.7e-32 142.5 140 56.4
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 3.5e-32 142.1 139 56.1
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 7.8e-32 141.0 151 53.6
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 1.3e-31 140.2 142 52.8
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.7e-31 139.8 153 52.3
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 1.7e-31 139.8 142 53.5
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 2.3e-31 139.4 149 53.7
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 5.0e-31 138.3 141 53.2
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 5.0e-31 138.3 142 52.1
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 5.0e-31 138.3 142 52.1
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 6.6e-31 137.9 139 53.2
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 1.1e-30 137.1 139 53.2
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 1.1e-30 137.1 145 52.4
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.1e-30 137.1 151 51.0
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.5e-30 136.7 147 52.4
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.9e-30 136.3 144 52.8
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 1.9e-30 136.3 149 51.0
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 1.9e-30 136.3 142 52.8
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 2.5e-30 136.0 141 53.2
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.5e-30 136.0 141 53.2
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 2.5e-30 136.0 141 53.2
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 2.5e-30 136.0 139 53.2
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.5e-30 136.0 151 50.3
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 3.3e-30 135.6 148 51.4
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 3.3e-30 135.6 143 52.4
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 3.3e-30 135.6 151 51.0
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 3.3e-30 135.6 151 51.0
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 3.3e-30 135.6 153 51.0
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.3e-30 135.6 141 52.5
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 3.3e-30 135.6 137 54.7
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 4.3e-30 135.2 147 52.4
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.3e-30 135.2 147 52.4
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.3e-30 135.2 147 52.4
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.3e-30 135.2 149 51.7
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 4.3e-30 135.2 144 52.1
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 4.3e-30 135.2 139 52.5
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 5.6e-30 134.8 150 51.3
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 7.3e-30 134.4 142 53.5
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 7.3e-30 134.4 142 53.5
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 7.3e-30 134.4 142 53.5
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 7.3e-30 134.4 141 53.2
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 9.5e-30 134.0 142 53.5
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 9.5e-30 134.0 142 53.5
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 9.5e-30 134.0 149 50.3
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 9.5e-30 134.0 141 53.2
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 9.5e-30 134.0 144 53.5
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 9.5e-30 134.0 144 53.5
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 1.2e-29 133.7 142 50.7
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 1.6e-29 133.3 141 53.2
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.6e-29 133.3 147 50.3
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 2.1e-29 132.9 143 52.4
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 2.1e-29 132.9 143 52.4
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.1e-29 132.9 144 52.8
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 2.1e-29 132.9 139 51.8
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 2.8e-29 132.5 140 50.7
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 3.6e-29 132.1 143 51.0
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 3.6e-29 132.1 140 52.1
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 3.6e-29 132.1 156 48.7
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 6.2e-29 131.3 139 53.2
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 2.3e-28 129.4 142 50.0
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 2.3e-28 129.4 138 51.4
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 3.1e-28 129.0 142 50.7
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 3.1e-28 129.0 142 50.7
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.6e-27 125.9 145 50.3
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 3.4e-27 125.6 133 51.9
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.4e-27 125.6 138 50.7
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 9.8e-27 124.0 136 50.0
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 9.8e-27 124.0 137 50.4
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 1.7e-26 123.2 144 48.6
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 1.7e-26 123.2 122 54.9
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 2.9e-26 122.5 129 51.9
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 4.9e-26 121.7 141 48.2
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 8.3e-26 120.9 143 48.3
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 1.1e-25 120.6 132 50.8
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.1e-25 120.6 140 47.1
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 7.0e-25 117.9 136 47.1
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 7.0e-25 117.9 148 45.9
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 9.2e-25 117.5 140 47.1
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 9.2e-25 117.5 133 50.4
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 1.6e-24 116.7 142 46.5
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 2.7e-24 115.9 146 45.9
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 3.5e-24 115.5 135 47.4
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 4.6e-24 115.2 140 46.4
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 4.6e-24 115.2 140 46.4
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 4.6e-24 115.2 143 43.4
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 4.6e-24 115.2 137 46.7
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 6.0e-24 114.8 133 46.6
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 7.8e-24 114.4 141 48.2
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 7.8e-24 114.4 138 46.4
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 7.8e-24 114.4 131 48.1
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 1.0e-23 114.0 138 44.2
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.3e-23 113.6 143 45.5
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.1e-22 110.5 126 50.8
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 1.1e-22 110.5 135 46.7
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 1.1e-22 110.5 142 47.2
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 1.5e-22 110.2 140 46.4
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 1.9e-22 109.8 139 45.3
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.9e-22 109.8 134 47.0
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 3.3e-22 109.0 153 42.5
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 3.3e-22 109.0 133 47.4
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 4.3e-22 108.6 147 43.5
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 7.3e-22 107.8 134 45.5
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 9.5e-22 107.5 139 46.0
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.1e-21 106.3 123 52.0
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 6.2e-21 104.8 146 42.5
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 6.2e-21 104.8 123 48.0
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 1.1e-20 104.0 141 41.8
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.4e-20 103.6 129 42.6
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.4e-20 103.6 129 42.6
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 1.8e-20 103.2 137 45.3
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 2.3e-20 102.8 137 47.4
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 6.8e-20 101.3 134 44.0
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 3.4e-19 99.0 136 45.6
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 5.8e-19 98.2 132 45.5
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 2.2e-18 96.3 91 58.2
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 8.3e-18 94.4 119 42.0
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.4e-17 93.6 112 50.0
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 7.1e-17 91.3 91 56.0
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.2e-16 90.5 100 51.0
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 1.6e-16 90.1 141 40.4
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 6.0e-16 88.2 89 53.9
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.7e-15 86.7 90 51.1
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 3.9e-15 85.5 118 44.1
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 3.9e-15 85.5 90 51.1
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 5.1e-15 85.1 145 40.0
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 3.3e-14 82.4 136 42.6
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.1e-13 79.7 88 52.3
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 6.2e-13 78.2 104 43.3
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.4e-12 77.0 128 36.7
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 8.9e-12 74.3 109 42.2
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 8.9e-12 74.3 114 36.0
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 1.2e-11 73.9 128 40.6
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 9.9e-11 70.9 92 45.7
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-08 63.9 85 40.0
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 8.6e-07 57.8 124 39.5
Zm00001eb090900 Zea mays HOM05D003772 ORTHO05D004509 8.6e-07 57.8 68 52.9
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 7.3e-06 54.7 75 41.3
Aqoxy4G00788 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 9.6e-06 54.3 118 30.5


User provided reference genes

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