Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38237 Brassica carinata HOM05D008960 ORTHO05D019923 9.3e-270 932.9 466 100.0
C08p09880 Brassica napus HOM05D008960 ORTHO05D019923 7.1e-254 880.2 463 96.1
BolC8t48664H Brassica oleracea HOM05D008960 ORTHO05D019923 7.1e-254 880.2 463 96.1
C02p03040 Brassica napus HOM05D008960 ORTHO05D019923 5.2e-180 634.8 327 96.3
C03p49100 Brassica napus HOM05D008960 ORTHO05D019923 1.5e-166 590.1 308 95.1
C06p23680 Brassica napus HOM05D008960 ORTHO05D019923 3.4e-163 578.9 300 95.7
BraA10t42359Z Brassica rapa HOM05D008960 ORTHO05D019923 1.0e-159 567.4 327 88.7
A06p00150 Brassica napus HOM05D008960 ORTHO05D021621 1.0e-71 275.0 245 62.9
A07p28910 Brassica napus HOM05D008960 ORTHO05D021621 2.3e-71 273.9 245 62.4
BraA07t30533Z Brassica rapa HOM05D008960 ORTHO05D021621 2.3e-71 273.9 245 62.4
BcaB06g29478 Brassica carinata HOM05D008960 ORTHO05D021621 5.2e-71 272.7 224 65.6
BcaC03g18085 Brassica carinata HOM05D008960 ORTHO05D021621 5.2e-71 272.7 224 65.6
BolC2t12209H Brassica oleracea HOM05D008960 ORTHO05D021621 5.2e-71 272.7 224 65.6
BcaC06g35218 Brassica carinata HOM05D008960 ORTHO05D091464 3.0e-66 256.9 239 61.1
BcaC08g46605 Brassica carinata HOM05D008960 ORTHO05D093223 2.1e-59 234.2 166 74.7
C03p18280 Brassica napus HOM05D008960 ORTHO05D021862 2.5e-57 227.3 234 58.5
BolC3t14226H Brassica oleracea HOM05D008960 ORTHO05D021862 2.5e-57 227.3 234 58.5
BolC3t14293H Brassica oleracea HOM05D008960 ORTHO05D021862 1.1e-55 221.9 233 57.5
A08p20780 Brassica napus HOM05D000149 ORTHO05D000076 1.8e-55 221.1 133 85.7
BraA08t34032Z Brassica rapa HOM05D000149 ORTHO05D000076 1.8e-55 221.1 133 85.7
BcaB04g17812 Brassica carinata HOM05D008960 ORTHO05D021862 6.8e-55 219.2 202 61.9
C06p42770 Brassica napus HOM05D008960 ORTHO05D033710 6.8e-55 219.2 156 72.4
BcaB04g20772 Brassica carinata HOM05D008960 ORTHO05D093326 4.1e-52 209.9 170 70.0
BolC3t19742H Brassica oleracea HOM05D008960 ORTHO05D032503 9.2e-52 208.8 176 64.2
BcaC07g38234 Brassica carinata HOM05D000149 ORTHO05D000076 6.8e-47 192.6 133 74.4
BcaNung06322 Brassica carinata HOM05D000149 ORTHO05D000076 6.8e-47 192.6 133 74.4
BolC8t48661H Brassica oleracea HOM05D000149 ORTHO05D000076 6.8e-47 192.6 133 74.4
BcaC05g24287 Brassica carinata HOM05D008960 ORTHO05D032503 2.6e-46 190.7 155 65.2
BcaC01g00023 Brassica carinata HOM05D008960 ORTHO05D091451 5.4e-44 183.0 204 52.5
C09p68970 Brassica napus HOM05D008960 ORTHO05D032503 1.6e-43 181.4 154 63.0
A08p20790 Brassica napus HOM05D000149 ORTHO05D000076 6.0e-43 179.5 133 69.9
BcaB01g02008 Brassica carinata HOM05D000149 ORTHO05D000076 2.3e-42 177.6 133 67.7
Sp7g24330 Schrenkiella parvula HOM05D000149 ORTHO05D000076 3.0e-42 177.2 133 69.2
BcaC08g46608 Brassica carinata HOM05D008960 ORTHO05D094201 1.6e-40 171.4 148 68.2
BcaNung02421 Brassica carinata HOM05D000149 ORTHO05D000076 1.6e-40 171.4 169 56.2
C01p22280 Brassica napus HOM05D000149 ORTHO05D000076 2.0e-38 164.5 133 63.2
Thhalv10026784m.g Eutrema salsugineum HOM05D000149 ORTHO05D000076 4.4e-38 163.3 133 62.4
BcaC09g50701 Brassica carinata HOM05D000149 ORTHO05D000076 7.6e-38 162.5 133 63.2
BolC1t02158H Brassica oleracea HOM05D000149 ORTHO05D000076 7.6e-38 162.5 133 63.2
A01p17640 Brassica napus HOM05D000149 ORTHO05D000076 6.4e-37 159.5 133 63.2
Carub.0007s1453 Capsella rubella HOM05D000149 ORTHO05D000076 1.9e-36 157.9 133 59.4
BraA01t01718Z Brassica rapa HOM05D000149 ORTHO05D000076 3.5e-35 153.7 133 61.7
AL7G26530 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 5.1e-34 149.8 131 56.5
BraA09t36250Z Brassica rapa HOM05D011932 ORTHO05D024153 3.3e-33 147.1 172 56.4
AT4G26420 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 3.6e-32 143.7 133 55.6
BraA09t40506Z Brassica rapa HOM05D011932 ORTHO05D023872 4.8e-32 143.3 159 57.9
CARHR233980 Cardamine hirsuta HOM05D000149 ORTHO05D000076 9.0e-31 139.0 133 54.1
BcaB06g25872 Brassica carinata HOM05D011932 ORTHO05D094935 9.9e-30 135.6 152 55.9
BcaC07g41369 Brassica carinata HOM05D011932 ORTHO05D024153 2.9e-29 134.0 150 59.3
C08p09850 Brassica napus HOM05D000149 ORTHO05D000076 6.4e-29 132.9 71 88.7
BcaNung05738 Brassica carinata HOM05D011932 ORTHO05D023872 8.4e-29 132.5 184 50.5
Carub.0008s1662 Capsella rubella HOM05D000149 ORTHO05D000076 1.9e-28 131.3 133 50.4
C06p39950 Brassica napus HOM05D011932 ORTHO05D023872 4.2e-28 130.2 151 55.6
BcaC03g17616 Brassica carinata HOM05D011932 ORTHO05D024153 1.3e-26 125.2 151 55.6
THA.LOC104811708 Tarenaya hassleriana HOM05D000149 ORTHO05D000076 3.9e-26 123.6 133 48.9
AT5G56300 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 5.1e-26 123.2 133 48.1
AL8G31930 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 6.7e-26 122.9 133 48.1
BolC2t11672H Brassica oleracea HOM05D011932 ORTHO05D023872 6.7e-26 122.9 151 55.0
BolC4t22728H Brassica oleracea HOM05D011932 ORTHO05D023872 6.7e-26 122.9 108 69.4
Sp6g18150 Schrenkiella parvula HOM05D000149 ORTHO05D000076 4.3e-25 120.2 133 47.4
TWI60G1465 Tripterygium wilfordii HOM05D000149 ORTHO05D000076 1.6e-24 118.2 136 47.8
A03p13570 Brassica napus HOM05D000149 ORTHO05D000076 4.8e-24 116.7 133 46.6
Aa31LG3G12210 Aethionema arabicum HOM05D000149 ORTHO05D009857 6.2e-24 116.3 104 53.8
Thhalv10013757m.g Eutrema salsugineum HOM05D000149 ORTHO05D000076 8.1e-24 115.9 133 48.1
TWI32G0997 Tripterygium wilfordii HOM05D000149 ORTHO05D000076 1.1e-23 115.5 133 46.6
BcaB01g04391 Brassica carinata HOM05D000149 ORTHO05D000076 1.4e-23 115.2 133 45.9
Nn2g15919 Nelumbo nucifera HOM05D000149 ORTHO05D000076 1.4e-23 115.2 135 43.7
PSO339G2212 Papaver somniferum HOM05D000149 ORTHO05D000076 1.8e-23 114.8 137 41.6
CARHR269700 Cardamine hirsuta HOM05D000149 ORTHO05D000076 2.4e-23 114.4 133 43.6
PSO384G0767 Papaver somniferum HOM05D000149 ORTHO05D000076 4.0e-23 113.6 137 42.3
GSVIVG01025514001 Vitis vinifera HOM05D000149 ORTHO05D000076 5.3e-23 113.2 135 43.7
Ciclev10017993m.g Citrus clementina HOM05D000149 ORTHO05D000076 6.9e-23 112.8 131 46.6
MBI19_g24064_MAGBIO Magnolia biondii HOM05D000149 ORTHO05D000076 6.9e-23 112.8 135 44.4
BraA03t10662Z Brassica rapa HOM05D000149 ORTHO05D000076 9.0e-23 112.5 131 45.8
BcaNung05646 Brassica carinata HOM05D000149 ORTHO05D000076 1.5e-22 111.7 133 44.4
BcaC01g06415 Brassica carinata HOM05D000149 ORTHO05D000076 2.0e-22 111.3 133 45.9
BolC3t14018H Brassica oleracea HOM05D000149 ORTHO05D000076 2.0e-22 111.3 133 45.9
Cfa009522 Carpinus fangiana HOM05D000149 ORTHO05D000076 2.6e-22 110.9 135 43.0
C03p15870 Brassica napus HOM05D000149 ORTHO05D000076 4.5e-22 110.2 131 45.8
COL.COLO4_35059 Corchorus olitorius HOM05D000149 ORTHO05D000076 7.6e-22 109.4 136 44.1
Haze_06866 Corylus avellana HOM05D000149 ORTHO05D000076 1.3e-21 108.6 135 42.2
Eucgr.J01721 Eucalyptus grandis HOM05D000149 ORTHO05D000076 1.7e-21 108.2 132 44.7
QL01p007741 Quercus lobata HOM05D000149 ORTHO05D000076 6.5e-21 106.3 133 41.4
Atru.chr3.2038 Acer truncatum HOM05D000149 ORTHO05D000076 1.9e-20 104.8 133 42.1
ATR0068G012 Amborella trichopoda HOM05D000149 ORTHO05D000076 2.5e-20 104.4 135 39.3
BcaC04g20103 Brassica carinata HOM05D008189 ORTHO05D000076 3.2e-20 104.0 126 46.8
PGR119G2156 Punica granatum HOM05D000149 ORTHO05D000076 1.2e-19 102.1 136 41.9
HPP92_007513 Vanilla planifolia HOM05D000149 ORTHO05D000076 1.2e-19 102.1 132 41.7
Manes.15G111600 Manihot esculenta HOM05D000149 ORTHO05D000076 1.6e-19 101.7 132 42.4
BraA07t31746Z Brassica rapa HOM05D008960 ORTHO05D108237 6.0e-19 99.8 50 92.0
CDE02G1647 Ceratophyllum demersum HOM05D000149 ORTHO05D000076 1.3e-18 98.6 104 43.3
BcaC01g00787 Brassica carinata HOM05D008960 ORTHO05D094263 2.5e-17 94.4 89 58.4
CDE04G1373 Ceratophyllum demersum HOM05D001256 ORTHO05D000076 5.7e-17 93.2 130 36.9
C07p48840 Brassica napus HOM05D011932 ORTHO05D024153 7.4e-17 92.8 88 65.9
BolC7t45392H Brassica oleracea HOM05D011932 ORTHO05D024153 7.4e-17 92.8 88 65.9
C07p18550 Brassica napus HOM05D008960 ORTHO05D103607 1.3e-16 92.0 54 81.5
BcaC01g05426 Brassica carinata HOM05D008960 ORTHO05D021862 2.1e-16 91.3 93 59.1
BcaC01g06122 Brassica carinata HOM05D008960 ORTHO05D021862 2.1e-16 91.3 92 58.7
BolC9t57619H Brassica oleracea HOM05D000149 ORTHO05D000076 1.4e-15 88.6 117 45.3
A06p27480 Brassica napus HOM05D011932 ORTHO05D096777 7.6e-14 82.8 73 67.1
BcaC03g16984 Brassica carinata HOM05D010911 ORTHO05D024084 6.1e-11 73.2 72 58.3
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 5.1e-10 70.1 84 51.2
A10p24070 Brassica napus HOM05D009661 ORTHO05D018783 5.1e-10 70.1 129 41.9
BraA10t44470Z Brassica rapa HOM05D009661 ORTHO05D018783 5.1e-10 70.1 129 41.9
C03p64400 Brassica napus HOM05D009661 ORTHO05D018783 4.3e-09 67.0 125 40.0
SEGI_04746 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 4.3e-09 67.0 100 33.0
C06p07090 Brassica napus HOM05D009661 ORTHO05D020160 7.4e-09 66.2 121 40.5
SEGI_07758 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 7.4e-09 66.2 97 36.1
SEGI_12169 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 7.4e-09 66.2 97 36.1
SEGI_31092 Sequoiadendron giganteum HOM05D000149 ORTHO05D000076 7.4e-09 66.2 100 33.0
C08p15900 Brassica napus HOM05D021780 ORTHO05D021716 2.2e-08 64.7 106 45.3
BolC8t49214H Brassica oleracea HOM05D021780 ORTHO05D021716 2.2e-08 64.7 106 45.3
C05p33320 Brassica napus HOM05D030501 ORTHO05D032957 4.8e-08 63.5 84 47.6
BolC5t32057H Brassica oleracea HOM05D030501 ORTHO05D032957 4.8e-08 63.5 84 47.6
C06p25450 Brassica napus HOM05D009661 ORTHO05D020160 8.2e-08 62.8 125 38.4
Pp3c16_20180 Physcomitrium patens HOM05D000149 ORTHO05D000076 1.4e-07 62.0 94 31.9
BcaC05g27393 Brassica carinata HOM05D030501 ORTHO05D032957 1.8e-07 61.6 84 46.4
Mapoly0125s0011 Marchantia polymorpha HOM05D000149 ORTHO05D000076 2.4e-07 61.2 107 33.6
PGR083G2094 Punica granatum HOM05D000149 ORTHO05D000076 9.0e-07 59.3 104 34.6
TPR.G32237 Trifolium pratense HOM05D000149 ORTHO05D000076 1.2e-06 58.9 105 33.3
A06p35440 Brassica napus HOM05D009661 ORTHO05D018783 1.5e-06 58.5 142 36.6
BraA06t26467Z Brassica rapa HOM05D009661 ORTHO05D018783 1.5e-06 58.5 142 36.6
RcHm_v2.0_Chr5g0041561 Rosa chinensis HOM05D000149 ORTHO05D000076 1.5e-06 58.5 129 31.8
SGA_v2.0_scaffold171G38906 Striga asiatica HOM05D000149 ORTHO05D000076 1.5e-06 58.5 102 34.3
FAN25G2091 Fragaria x ananassa HOM05D000149 ORTHO05D000076 2.0e-06 58.2 129 31.0
C05p18090 Brassica napus HOM05D000149 ORTHO05D000076 2.6e-06 57.8 101 32.7
Phvul.008G272800 Phaseolus vulgaris HOM05D000149 ORTHO05D000076 2.6e-06 57.8 105 31.4
VMungo0540G0042 Vigna mungo HOM05D000149 ORTHO05D000076 2.6e-06 57.8 105 34.3
VMungo0647G1670 Vigna mungo HOM05D000149 ORTHO05D000076 2.6e-06 57.8 105 31.4
C01p19620 Brassica napus HOM05D010911 ORTHO05D024084 3.4e-06 57.4 46 65.2
DCAR_002510 Daucus carota HOM05D000149 ORTHO05D000076 3.4e-06 57.4 102 31.4
FvH4_3g23570 Fragaria vesca HOM05D000149 ORTHO05D000076 3.4e-06 57.4 106 34.0
FAN11G3695 Fragaria x ananassa HOM05D000149 ORTHO05D000076 3.4e-06 57.4 106 34.0
AagrBONN_evm.TU.Sc2ySwM_117.3480 Anthoceros agrestis HOM05D000149 ORTHO05D000076 4.5e-06 57.0 101 27.7
BcaNung02568 Brassica carinata HOM05D021780 ORTHO05D021716 4.5e-06 57.0 47 66.0
CANSAT11G0403 Cannabis sativa HOM05D000149 ORTHO05D000076 4.5e-06 57.0 106 34.0
ClCG09G011080 Citrullus lanatus HOM05D000149 ORTHO05D000076 4.5e-06 57.0 101 30.7
Prupe.4G223700 Prunus persica HOM05D000149 ORTHO05D000076 4.5e-06 57.0 106 33.0
Glyma.14G018100 Glycine max HOM05D000149 ORTHO05D000076 5.9e-06 56.6 105 31.4
Mapoly0003s0211 Marchantia polymorpha HOM05D000149 ORTHO05D000076 5.9e-06 56.6 101 27.7
TPR.G35366 Trifolium pratense HOM05D000149 ORTHO05D000076 5.9e-06 56.6 128 31.2
A06p15780 Brassica napus HOM05D000149 ORTHO05D000076 7.7e-06 56.2 101 29.7
Ca_14767_v3 Cicer arietinum L. HOM05D000149 ORTHO05D000076 7.7e-06 56.2 105 31.4
Ca_29743_v3 Cicer arietinum L. HOM05D000149 ORTHO05D000076 7.7e-06 56.2 105 31.4
Glyma.02G295300 Glycine max HOM05D000149 ORTHO05D000076 7.7e-06 56.2 93 31.2
Lj6g0027019 Lotus japonicus HOM05D000149 ORTHO05D000076 7.7e-06 56.2 105 31.4
Lalb_Chr15g0081771 Lupinus albus HOM05D000149 ORTHO05D000076 7.7e-06 56.2 106 34.0
Lalb_Chr18g0050311 Lupinus albus HOM05D000149 ORTHO05D000076 7.7e-06 56.2 105 33.3


User provided reference genes

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