Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38059 Brassica carinata HOM05D001269 ORTHO05D001083 2.2e-64 248.8 126 100.0
BcaC07g38063 Brassica carinata HOM05D001269 ORTHO05D001083 3.7e-40 168.3 135 71.1
BolC8t48464H Brassica oleracea HOM05D001269 ORTHO05D001083 3.7e-40 168.3 135 71.1
BraA08t33290Z Brassica rapa HOM05D001269 ORTHO05D001083 1.6e-38 162.9 135 68.9
A08p13110 Brassica napus HOM05D001269 ORTHO05D001083 2.1e-38 162.5 135 68.9
BolC8t48457H Brassica oleracea HOM05D001269 ORTHO05D001083 1.0e-37 160.2 136 69.1
BcaB06g27007 Brassica carinata HOM05D001269 ORTHO05D001083 1.1e-28 130.2 135 60.0
Sp5g17450 Schrenkiella parvula HOM05D001269 ORTHO05D001083 2.8e-27 125.6 135 59.3
AL5G21760 Arabidopsis lyrata HOM05D001269 ORTHO05D001083 1.5e-25 119.8 135 57.0
AT3G43790 Arabidopsis thaliana HOM05D001269 ORTHO05D001083 2.0e-25 119.4 135 55.6
Carub.0005s0955 Capsella rubella HOM05D001269 ORTHO05D001083 3.4e-25 118.6 135 57.8
Carub.0005s0945 Capsella rubella HOM05D001269 ORTHO05D001083 5.8e-25 117.9 135 57.0
PGR102G0534 Punica granatum HOM05D001269 ORTHO05D001083 3.3e-12 75.5 136 41.2
Thecc.09G339200 Theobroma cacao HOM05D001269 ORTHO05D001083 1.3e-11 73.6 135 42.2
Duzib170G1065 Durio zibethinus HOM05D001269 ORTHO05D001083 2.8e-11 72.4 139 41.0
Sc21g0000260 Simmondsia chinensis HOM05D001269 ORTHO05D001083 2.8e-11 72.4 59 69.5
Lsat_1_v5_gn_5_65240 Lactuca sativa HOM05D001269 ORTHO05D001083 4.8e-11 71.6 59 67.8
Atru.chr10.801 Acer truncatum HOM05D001269 ORTHO05D001083 1.4e-10 70.1 58 70.7
Eucgr.B03776 Eucalyptus grandis HOM05D001269 ORTHO05D001083 1.4e-10 70.1 58 67.2
Hund05384 Selenicereus undatus HOM05D001269 ORTHO05D001083 1.4e-10 70.1 59 69.5
Thecc.09G339100 Theobroma cacao HOM05D001269 ORTHO05D001083 1.8e-10 69.7 58 67.2
TWI79G1578 Tripterygium wilfordii HOM05D001269 ORTHO05D001083 1.8e-10 69.7 133 39.8
COL.COLO4_18346 Corchorus olitorius HOM05D001269 ORTHO05D001083 2.4e-10 69.3 58 65.5
Gohir.A05G102100 Gossypium hirsutum HOM05D001269 ORTHO05D001083 3.1e-10 68.9 59 66.1
CiPaw.13G121500 Carya illinoinensis HOM05D001269 ORTHO05D001083 6.9e-10 67.8 134 39.6
TAR623G0807 Trochodendron aralioides HOM05D001269 ORTHO05D001083 6.9e-10 67.8 59 64.4
Gohir.D05G101800 Gossypium hirsutum HOM05D001269 ORTHO05D001083 9.0e-10 67.4 58 65.5
Gorai.009G106000 Gossypium raimondii HOM05D001269 ORTHO05D001083 9.0e-10 67.4 135 41.5
ECA233G4258 Erigeron canadensis HOM05D001269 ORTHO05D001083 1.2e-09 67.0 59 64.4
MBI19_g10810_MAGBIO Magnolia biondii HOM05D001269 ORTHO05D001083 3.4e-09 65.5 59 59.3
PGR102G2386 Punica granatum HOM05D001269 ORTHO05D001083 3.4e-09 65.5 58 62.1
Nn7g37210 Nelumbo nucifera HOM05D001269 ORTHO05D001083 4.5e-09 65.1 59 61.0
PGR102G1229 Punica granatum HOM05D001269 ORTHO05D001083 7.6e-09 64.3 58 62.1
HPP92_018384 Vanilla planifolia HOM05D001269 ORTHO05D001083 7.6e-09 64.3 59 59.3
Os11g0135000 Oryza sativa ssp. japonica HOM05D001269 ORTHO05D001083 4.9e-08 61.6 59 54.2
Cfa010426 Carpinus fangiana HOM05D001269 ORTHO05D001083 6.4e-08 61.2 140 33.6
Hma1.2p1_1269F.1_g271580 Hydrangea macrophylla HOM05D001269 ORTHO05D001083 1.1e-07 60.5 133 38.3
GSVIVG01027390001 Vitis vinifera HOM05D001269 ORTHO05D001083 1.1e-07 60.5 133 35.3
Os12g0132800 Oryza sativa ssp. japonica HOM05D001269 ORTHO05D001083 1.4e-07 60.1 58 55.2
PSO339G1045 Papaver somniferum HOM05D001269 ORTHO05D001083 1.4e-07 60.1 59 52.5
PSO384G1717 Papaver somniferum HOM05D001269 ORTHO05D001083 1.4e-07 60.1 130 36.2
Os11g0135900 Oryza sativa ssp. japonica HOM05D001269 ORTHO05D001083 1.9e-07 59.7 59 50.8
Os12g0133100 Oryza sativa ssp. japonica HOM05D001269 ORTHO05D001083 2.4e-07 59.3 59 50.8
CAN.G959.44 Capsicum annuum HOM05D001269 ORTHO05D001083 3.2e-07 58.9 136 34.6
Haze_20351 Corylus avellana HOM05D001269 ORTHO05D001083 3.2e-07 58.9 137 32.8
Os12g0133000 Oryza sativa ssp. japonica HOM05D001269 ORTHO05D001083 3.2e-07 58.9 58 50.0
TAR623G0745 Trochodendron aralioides HOM05D001269 ORTHO05D001083 3.2e-07 58.9 137 35.8
GSVIVG01025827001 Vitis vinifera HOM05D001269 ORTHO05D001083 3.2e-07 58.9 59 54.2
Zm00001eb093430 Zea mays HOM05D001269 ORTHO05D001083 3.2e-07 58.9 128 35.2
BcaC04g19083 Brassica carinata HOM05D001269 ORTHO05D001083 4.2e-07 58.5 139 35.3
CiPaw.09G161400 Carya illinoinensis HOM05D001269 ORTHO05D001083 4.2e-07 58.5 136 36.8
Haze_03379 Corylus avellana HOM05D001269 ORTHO05D001083 4.2e-07 58.5 59 50.8
Sp6g30270 Schrenkiella parvula HOM05D001269 ORTHO05D001083 4.2e-07 58.5 119 38.7
PGSC0003DMG400007190 Solanum tuberosum HOM05D001269 ORTHO05D001083 4.2e-07 58.5 141 37.6
GSVIVG01027385001 Vitis vinifera HOM05D001269 ORTHO05D001083 4.2e-07 58.5 59 54.2
Zm00001eb093440 Zea mays HOM05D001269 ORTHO05D001083 4.2e-07 58.5 59 49.2
BolC9t59172H Brassica oleracea HOM05D001269 ORTHO05D001083 5.5e-07 58.2 139 35.3
BolC9t59173H Brassica oleracea HOM05D001269 ORTHO05D001083 5.5e-07 58.2 139 35.3
GSVIVG01027393001 Vitis vinifera HOM05D001269 ORTHO05D001083 5.5e-07 58.2 59 54.2
Zm00001eb196180 Zea mays HOM05D001269 ORTHO05D001083 5.5e-07 58.2 59 49.2
AL6G24370 Arabidopsis lyrata HOM05D001269 ORTHO05D001083 7.1e-07 57.8 59 50.8
Thhalv10013417m.g Eutrema salsugineum HOM05D001269 ORTHO05D001083 7.1e-07 57.8 57 54.4
Thecc.10G109500 Theobroma cacao HOM05D001269 ORTHO05D001083 7.1e-07 57.8 59 52.5
TWI63G0279 Tripterygium wilfordii HOM05D001269 ORTHO05D001083 9.3e-07 57.4 143 33.6
HPP92_019904 Vanilla planifolia HOM05D001269 ORTHO05D001083 9.3e-07 57.4 59 54.2
Duzib114G0834 Durio zibethinus HOM05D001269 ORTHO05D001083 1.2e-06 57.0 133 32.3
Glyma.06G313600 Glycine max HOM05D001269 ORTHO05D001083 1.2e-06 57.0 59 52.5
MBI19_g33011_MAGBIO Magnolia biondii HOM05D001269 ORTHO05D001083 1.2e-06 57.0 59 52.5
Os01g0268100 Oryza sativa ssp. japonica HOM05D001269 ORTHO05D001083 1.2e-06 57.0 59 50.8
Os11g0134900 Oryza sativa ssp. japonica HOM05D001269 ORTHO05D001083 1.2e-06 57.0 58 50.0
Sabra08G0006400 Salix brachista HOM05D001269 ORTHO05D001083 1.2e-06 57.0 59 52.5
Solyc10g076940.3 Solanum lycopersicum HOM05D001269 ORTHO05D001083 1.2e-06 57.0 59 55.9
Sopen10g028650 Solanum pennellii HOM05D001269 ORTHO05D001083 1.2e-06 57.0 59 55.9
Zm00001eb163460 Zea mays HOM05D001269 ORTHO05D001083 1.2e-06 57.0 62 51.6
Aa31sc90G20 Aethionema arabicum HOM05D001269 ORTHO05D001083 1.6e-06 56.6 59 52.5
Manes.10G069400 Manihot esculenta HOM05D001269 ORTHO05D001083 1.6e-06 56.6 59 54.2
Sc13g0000710 Simmondsia chinensis HOM05D001269 ORTHO05D001083 1.6e-06 56.6 59 54.2
TWI38G0510 Tripterygium wilfordii HOM05D001269 ORTHO05D001083 1.6e-06 56.6 143 31.5
AT5G13750 Arabidopsis thaliana HOM05D001269 ORTHO05D001083 2.1e-06 56.2 132 32.6
MSTRG.10761 Avicennia marina HOM05D001269 ORTHO05D001083 2.1e-06 56.2 59 54.2
BcaB01g05338 Brassica carinata HOM05D001269 ORTHO05D001083 2.1e-06 56.2 57 52.6
Cpa.g.sc125.47 Carica papaya HOM05D001269 ORTHO05D001083 2.1e-06 56.2 59 50.8
Duzib106G0227 Durio zibethinus HOM05D001269 ORTHO05D001083 2.1e-06 56.2 133 33.1
THA.LOC104826689 Tarenaya hassleriana HOM05D001269 ORTHO05D001083 2.1e-06 56.2 133 33.1
Actinidia32802 Actinidia chinensis HOM05D001269 ORTHO05D001083 2.7e-06 55.8 136 33.1
Aqoxy2G00179_Aqoxy2G00180_Aqoxy2G00182 Aquilegia oxysepala HOM05D001269 ORTHO05D001083 2.7e-06 55.8 95 38.9
BcaC04g24257 Brassica carinata HOM05D001269 ORTHO05D001083 2.7e-06 55.8 63 54.0
BcaC04g24258 Brassica carinata HOM05D001269 ORTHO05D001083 2.7e-06 55.8 63 54.0
CANSAT54G2837 Cannabis sativa HOM05D001269 ORTHO05D001083 2.7e-06 55.8 59 54.2
Carub.0006s1193 Capsella rubella HOM05D001269 ORTHO05D001083 2.7e-06 55.8 63 50.8
Cfa019901 Carpinus fangiana HOM05D001269 ORTHO05D001083 2.7e-06 55.8 134 32.1
Glyma.04G124800 Glycine max HOM05D001269 ORTHO05D001083 2.7e-06 55.8 59 49.2
Glyma.13G186700 Glycine max HOM05D001269 ORTHO05D001083 2.7e-06 55.8 133 31.6
Nn7g37211 Nelumbo nucifera HOM05D001269 ORTHO05D001083 2.7e-06 55.8 59 52.5
Os11g0135300 Oryza sativa ssp. japonica HOM05D001269 ORTHO05D001083 2.7e-06 55.8 58 50.0
PSO384G4046 Papaver somniferum HOM05D001269 ORTHO05D001083 2.7e-06 55.8 133 31.6
PSO675G5926 Papaver somniferum HOM05D001269 ORTHO05D001083 2.7e-06 55.8 58 48.3
PSO675G7841 Papaver somniferum HOM05D001269 ORTHO05D001083 2.7e-06 55.8 59 49.2
THA.LOC104826692 Tarenaya hassleriana HOM05D001269 ORTHO05D001083 2.7e-06 55.8 62 48.4
A10p24580 Brassica napus HOM05D001269 ORTHO05D002660 3.5e-06 55.5 139 34.5
BraA10t44521Z Brassica rapa HOM05D001269 ORTHO05D002660 3.5e-06 55.5 139 34.5
COL.COLO4_33893 Corchorus olitorius HOM05D001269 ORTHO05D001083 3.5e-06 55.5 133 33.1
DCAR_030801 Daucus carota HOM05D001269 ORTHO05D001083 3.5e-06 55.5 59 50.8
Lj3g0002808 Lotus japonicus HOM05D001269 ORTHO05D001083 3.5e-06 55.5 59 49.2
Medtr3g010850 Medicago truncatula HOM05D001269 ORTHO05D001083 3.5e-06 55.5 59 49.2
Peaxi162Scf00153g00416 Petunia axillaris HOM05D001269 ORTHO05D001083 3.5e-06 55.5 61 52.5
TWI38G0532 Tripterygium wilfordii HOM05D001269 ORTHO05D001083 3.5e-06 55.5 59 50.8
ATR1096G021 Amborella trichopoda HOM05D001269 ORTHO05D001083 4.6e-06 55.1 58 53.4
A03p06160 Brassica napus HOM05D001269 ORTHO05D001083 4.6e-06 55.1 57 50.9
C03p07170 Brassica napus HOM05D001269 ORTHO05D001083 4.6e-06 55.1 57 50.9
BolC3t13218H Brassica oleracea HOM05D001269 ORTHO05D001083 4.6e-06 55.1 57 50.9
BraA03t09950Z Brassica rapa HOM05D001269 ORTHO05D001083 4.6e-06 55.1 57 50.9
Ciclev10001373m.g Citrus clementina HOM05D001269 ORTHO05D001083 4.6e-06 55.1 59 50.8
Eucgr.K01705 Eucalyptus grandis HOM05D001269 ORTHO05D001083 4.6e-06 55.1 58 51.7
Nitab4.5_0000062g0620 Nicotiana tabacum HOM05D001269 ORTHO05D001083 4.6e-06 55.1 59 54.2
PSO339G1894 Papaver somniferum HOM05D001269 ORTHO05D001083 4.6e-06 55.1 133 32.3
Psat0s909g0040 Pisum sativum HOM05D001269 ORTHO05D001083 4.6e-06 55.1 59 49.2
C09p63330 Brassica napus HOM05D001269 ORTHO05D002660 6.0e-06 54.7 63 52.4
BolC9t59180H Brassica oleracea HOM05D001269 ORTHO05D001083 6.0e-06 54.7 63 52.4
CAN.G128.118 Capsicum annuum HOM05D001269 ORTHO05D001083 6.0e-06 54.7 59 54.2
THA.LOC104819100 Tarenaya hassleriana HOM05D001269 ORTHO05D001083 6.0e-06 54.7 131 32.8
Thecc.05G117000 Theobroma cacao HOM05D001269 ORTHO05D001083 6.0e-06 54.7 59 55.9
CSS0022325 Camellia sinensis var. sinensis HOM05D001269 ORTHO05D001083 7.9e-06 54.3 58 50.0
CAN.G128.122 Capsicum annuum HOM05D001269 ORTHO05D001083 7.9e-06 54.3 140 33.6
CARHR199690 Cardamine hirsuta HOM05D001269 ORTHO05D001083 7.9e-06 54.3 63 49.2
PSO017G2185 Papaver somniferum HOM05D001269 ORTHO05D001083 7.9e-06 54.3 59 47.5
THA.LOC104826693 Tarenaya hassleriana HOM05D001269 ORTHO05D001083 7.9e-06 54.3 58 53.4
TWI38G2097 Tripterygium wilfordii HOM05D001269 ORTHO05D001083 7.9e-06 54.3 59 49.2


User provided reference genes

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