Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38057 Brassica carinata HOM05D003141 ORTHO05D003633 6.2e-56 220.7 123 100.0
BcaC07g38061 Brassica carinata HOM05D003141 ORTHO05D003633 6.2e-56 220.7 123 100.0
BolC8t48454H Brassica oleracea HOM05D003141 ORTHO05D003633 6.2e-56 220.7 123 100.0
A08p13000 Brassica napus HOM05D003141 ORTHO05D003633 1.0e-50 203.4 123 94.3
A08p13070 Brassica napus HOM05D003141 ORTHO05D003633 5.1e-50 201.1 125 93.6
BraA08t33289Z Brassica rapa HOM05D003141 ORTHO05D003633 2.8e-48 195.3 125 92.0
Sp7g16850 Schrenkiella parvula HOM05D003141 ORTHO05D003633 5.6e-41 171.0 130 79.2
Thhalv10024186m.g Eutrema salsugineum HOM05D003141 ORTHO05D003633 1.3e-40 169.9 129 79.8
AL7G37390 Arabidopsis lyrata HOM05D003141 ORTHO05D003633 3.9e-34 148.3 125 73.6
Carub.0007s2408 Capsella rubella HOM05D003141 ORTHO05D003633 1.6e-32 142.9 125 70.4
AT4G17330 Arabidopsis thaliana HOM05D003141 ORTHO05D003633 1.3e-29 133.3 125 68.8
BcaC06g33544 Brassica carinata HOM05D003141 ORTHO05D003633 1.1e-28 130.2 90 81.1
BcaNung00101 Brassica carinata HOM05D003141 ORTHO05D003633 6.7e-26 120.9 121 65.3
Aa31LG6G80 Aethionema arabicum HOM05D003141 ORTHO05D003633 6.3e-24 114.4 128 60.9
THA.LOC104806728 Tarenaya hassleriana HOM05D003141 ORTHO05D003633 2.7e-19 99.0 133 54.1
COL.COLO4_37161 Corchorus olitorius HOM05D003141 ORTHO05D003633 3.1e-15 85.5 82 59.8
Manes.01G081400 Manihot esculenta HOM05D003141 ORTHO05D003633 2.6e-14 82.4 110 50.0
MD06G1057100 Malus domestica HOM05D003141 ORTHO05D003633 4.5e-14 81.6 127 46.5
Gohir.A08G169600 Gossypium hirsutum HOM05D003141 ORTHO05D003633 5.9e-14 81.3 121 46.3
TWI81G0497 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 7.7e-14 80.9 75 64.0
Atru.chr9.1295 Acer truncatum HOM05D003141 ORTHO05D003633 1.0e-13 80.5 122 44.3
Duzib068G0714 Durio zibethinus HOM05D003141 ORTHO05D003633 1.3e-13 80.1 112 48.2
Phvul.002G057800 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 1.3e-13 80.1 75 60.0
Thecc.03G249800 Theobroma cacao HOM05D003141 ORTHO05D003633 1.3e-13 80.1 122 46.7
Glyma.11G033600 Glycine max HOM05D003141 ORTHO05D003633 1.7e-13 79.7 78 60.3
CsaV3_3G002610 Cucumis sativus L. HOM05D003141 ORTHO05D003633 2.2e-13 79.3 74 59.5
Gohir.D08G187900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 2.2e-13 79.3 121 45.5
Gorai.004G197800 Gossypium raimondii HOM05D003141 ORTHO05D003633 2.2e-13 79.3 121 45.5
MD04G1062800 Malus domestica HOM05D003141 ORTHO05D003633 2.2e-13 79.3 130 43.8
Manes.02G040600 Manihot esculenta HOM05D003141 ORTHO05D003633 2.2e-13 79.3 90 50.0
Sed0019628 Sechium edule HOM05D003141 ORTHO05D003633 2.9e-13 79.0 81 55.6
ClCG10G002580 Citrullus lanatus HOM05D003141 ORTHO05D003633 3.8e-13 78.6 74 59.5
Sc22g0000930 Simmondsia chinensis HOM05D003141 ORTHO05D003633 3.8e-13 78.6 109 46.8
MELO3C013931.2 Cucumis melo HOM05D003141 ORTHO05D003633 5.0e-13 78.2 74 58.1
QL12p011944 Quercus lobata HOM05D003141 ORTHO05D003633 5.0e-13 78.2 112 46.4
Glyma.05G060300 Glycine max HOM05D003141 ORTHO05D003633 6.5e-13 77.8 124 45.2
CiPaw.12G051500 Carya illinoinensis HOM05D003141 ORTHO05D003633 8.5e-13 77.4 128 44.5
Ciclev10018443m.g Citrus clementina HOM05D003141 ORTHO05D003633 8.5e-13 77.4 128 44.5
Gorai.008G234500 Gossypium raimondii HOM05D003141 ORTHO05D003633 8.5e-13 77.4 121 44.6
VMungo1215G1426 Vigna mungo HOM05D003141 ORTHO05D003633 8.5e-13 77.4 75 60.0
Cpa.g.sc29.172 Carica papaya HOM05D003141 ORTHO05D003633 1.1e-12 77.0 122 47.5
Potri.001G157300 Populus trichocarpa HOM05D003141 ORTHO05D003633 1.1e-12 77.0 110 47.3
CiPaw.11G080100 Carya illinoinensis HOM05D003141 ORTHO05D003633 1.4e-12 76.6 123 43.1
Gohir.A12G216300 Gossypium hirsutum HOM05D003141 ORTHO05D003633 1.4e-12 76.6 121 45.5
GSVIVG01004716001 Vitis vinifera HOM05D003141 ORTHO05D003633 1.4e-12 76.6 113 45.1
Glyma.01G208600 Glycine max HOM05D003141 ORTHO05D003633 1.9e-12 76.3 78 60.3
Prupe.5G068000 Prunus persica HOM05D003141 ORTHO05D003633 3.2e-12 75.5 89 50.6
Lj4g0011011 Lotus japonicus HOM05D003141 ORTHO05D003633 5.5e-12 74.7 122 43.4
TWI15G0894 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 9.4e-12 73.9 89 52.8
AUR62019955 Chenopodium quinoa HOM05D003141 ORTHO05D003633 1.6e-11 73.2 109 43.1
Duzib205G1689 Durio zibethinus HOM05D003141 ORTHO05D003633 1.6e-11 73.2 121 44.6
vmacro00195 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 1.6e-11 73.2 114 44.7
Sc07g0009290 Simmondsia chinensis HOM05D003141 ORTHO05D003633 2.1e-11 72.8 112 46.4
arahy.Tifrunner.gnm1.ann1.YK7683 Arachis hypogaea HOM05D003141 ORTHO05D003633 2.7e-11 72.4 75 56.0
arahy.Tifrunner.gnm1.ann1.ZLH3PG Arachis hypogaea HOM05D003141 ORTHO05D003633 2.7e-11 72.4 75 56.0
Lalb_Chr05g0214411 Lupinus albus HOM05D003141 ORTHO05D003633 2.7e-11 72.4 80 52.5
Potri.003G077600 Populus trichocarpa HOM05D003141 ORTHO05D003633 2.7e-11 72.4 118 46.6
Phvul.003G221300 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 3.6e-11 72.0 96 52.1
Haze_07903 Corylus avellana HOM05D003141 ORTHO05D003633 7.9e-11 70.9 83 51.8
FAN04G0074 Fragaria x ananassa HOM05D003141 ORTHO05D003633 7.9e-11 70.9 116 45.7
VMungo0251G3034 Vigna mungo HOM05D003141 ORTHO05D003633 1.0e-10 70.5 118 49.2
CSS0047611 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 1.4e-10 70.1 123 41.5
AUR62007092 Chenopodium quinoa HOM05D003141 ORTHO05D003633 1.4e-10 70.1 109 43.1
Ca_21973_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 1.4e-10 70.1 103 46.6
CSS0046148 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 1.8e-10 69.7 83 51.8
TPR.G18122 Trifolium pratense HOM05D003141 ORTHO05D003633 2.3e-10 69.3 75 57.3
FvH4_5g19090 Fragaria vesca HOM05D003141 ORTHO05D003633 3.0e-10 68.9 115 44.3
FAN18G0989 Fragaria x ananassa HOM05D003141 ORTHO05D003633 3.0e-10 68.9 115 44.3
Lj2g0024874 Lotus japonicus HOM05D003141 ORTHO05D003633 3.0e-10 68.9 81 53.1
FAN13G0222 Fragaria x ananassa HOM05D003141 ORTHO05D003633 6.7e-10 67.8 116 44.8
Medtr5g012780 Medicago truncatula HOM05D003141 ORTHO05D003633 8.8e-10 67.4 117 44.4
Hund14553 Selenicereus undatus HOM05D003141 ORTHO05D003633 8.8e-10 67.4 89 46.1
Ca_24583_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 2.0e-09 66.2 98 46.9
Dinv21645 Davidia involucrata HOM05D003141 ORTHO05D003633 3.3e-09 65.5 84 50.0
Nn6g33922 Nelumbo nucifera HOM05D003141 ORTHO05D003633 3.3e-09 65.5 90 46.7
TAR375G1127 Trochodendron aralioides HOM05D003141 ORTHO05D003633 3.3e-09 65.5 87 46.0
Nn1g00964 Nelumbo nucifera HOM05D003141 ORTHO05D003633 4.4e-09 65.1 90 46.7
TPR.G37647 Trifolium pratense HOM05D003141 ORTHO05D003633 9.7e-09 63.9 80 46.2
TAR374G0926 Trochodendron aralioides HOM05D003141 ORTHO05D003633 9.7e-09 63.9 91 42.9
vmacro14077 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 9.7e-09 63.9 89 46.1
SalBow6G4258 Salvia bowleyana HOM05D003141 ORTHO05D003633 1.3e-08 63.5 81 49.4
Gohir.A11G027000 Gossypium hirsutum HOM05D003141 ORTHO05D003633 2.8e-08 62.4 81 44.4
RcHm_v2.0_Chr7g0203541 Rosa chinensis HOM05D003141 ORTHO05D003633 2.8e-08 62.4 121 40.5
PGR042G4011 Punica granatum HOM05D003141 ORTHO05D003633 3.7e-08 62.0 126 41.3
Eucgr.D02089 Eucalyptus grandis HOM05D003141 ORTHO05D003633 6.3e-08 61.2 113 41.6
Gohir.D11G026200 Gossypium hirsutum HOM05D003141 ORTHO05D003633 6.3e-08 61.2 99 40.4
Gorai.007G028500 Gossypium raimondii HOM05D003141 ORTHO05D003633 6.3e-08 61.2 99 40.4
TAR636G0976 Trochodendron aralioides HOM05D003141 ORTHO05D003633 8.2e-08 60.8 119 41.2
Ah.12g053640 Amaranthus hybridus HOM05D003141 ORTHO05D003633 1.1e-07 60.5 88 40.9
MBI04_g09516_MAGBIO Magnolia biondii HOM05D003141 ORTHO05D003633 1.1e-07 60.5 92 44.6
Medtr4g100800 Medicago truncatula HOM05D003141 ORTHO05D003633 2.4e-07 59.3 122 40.2
Cc08_g12310 Coffea canephora HOM05D003141 ORTHO05D003633 5.3e-07 58.2 122 41.0
Psat4g072560 Pisum sativum HOM05D003141 ORTHO05D003633 9.1e-07 57.4 114 39.5
unitig_744.g24473 Utricularia gibba HOM05D003141 ORTHO05D003633 9.1e-07 57.4 129 36.4
Lalb_Chr05g0221221 Lupinus albus HOM05D003141 ORTHO05D003633 1.2e-06 57.0 110 38.2
Psat2g177640 Pisum sativum HOM05D003141 ORTHO05D003633 1.2e-06 57.0 117 40.2
TAR629G2174 Trochodendron aralioides HOM05D003141 ORTHO05D003633 1.2e-06 57.0 86 45.3
MSTRG.25519 Avicennia marina HOM05D003141 ORTHO05D003633 2.6e-06 55.8 81 48.1
Hund11601 Selenicereus undatus HOM05D003141 ORTHO05D003633 2.6e-06 55.8 89 39.3
Lalb_Chr09g0330011 Lupinus albus HOM05D003141 ORTHO05D003633 3.4e-06 55.5 128 37.5
Lj2C219G10 Lonicera japonica HOM05D003141 ORTHO05D003633 4.5e-06 55.1 48 58.3
ECA240G2052 Erigeron canadensis HOM05D003141 ORTHO05D003633 5.9e-06 54.7 101 44.6
Nitab4.5_0002289g0020 Nicotiana tabacum HOM05D003141 ORTHO05D003633 5.9e-06 54.7 42 64.3
Aqoxy7G00802 Aquilegia oxysepala HOM05D003141 ORTHO05D003633 7.7e-06 54.3 133 35.3
Lj8A264T56 Lonicera japonica HOM05D003141 ORTHO05D003633 7.7e-06 54.3 106 37.7


User provided reference genes

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