Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38055 Brassica carinata HOM05D003141 ORTHO05D003633 0.0e+00 1194.1 616 100.0
BcaC07g38056 Brassica carinata HOM05D003141 ORTHO05D003633 9.8e-251 870.2 1017 54.9
BraA08t33284Z Brassica rapa HOM05D003141 ORTHO05D003633 4.7e-245 851.3 717 69.7
BcaC07g38062 Brassica carinata HOM05D003141 ORTHO05D003633 1.5e-238 829.7 962 55.2
A08p13070 Brassica napus HOM05D003141 ORTHO05D003633 6.2e-221 771.2 1012 51.8
BolC8t48462H Brassica oleracea HOM05D003141 ORTHO05D003633 1.1e-166 590.9 535 66.0
A08p13010 Brassica napus HOM05D003141 ORTHO05D003633 2.2e-165 586.6 924 46.4
BraA08t33288Z Brassica rapa HOM05D003141 ORTHO05D003633 2.0e-155 553.5 553 61.8
Thhalv10024186m.g Eutrema salsugineum HOM05D003141 ORTHO05D003633 1.2e-147 527.7 938 43.6
Sp7g16850 Schrenkiella parvula HOM05D003141 ORTHO05D003633 5.9e-147 525.4 937 43.2
AL7G37390 Arabidopsis lyrata HOM05D003141 ORTHO05D003633 1.7e-146 523.9 699 52.2
AT4G17330 Arabidopsis thaliana HOM05D003141 ORTHO05D003633 1.1e-145 521.2 804 48.0
A08p13120 Brassica napus HOM05D003141 ORTHO05D003633 2.5e-145 520.0 539 61.6
Carub.0007s2408 Capsella rubella HOM05D003141 ORTHO05D003633 7.0e-140 501.9 830 45.1
BolC8t48453H Brassica oleracea HOM05D003141 ORTHO05D003633 2.0e-139 500.4 333 83.2
CARHR223940 Cardamine hirsuta HOM05D003141 ORTHO05D003633 2.7e-136 490.0 758 47.5
BolC8t48450H Brassica oleracea HOM05D003141 ORTHO05D003633 1.0e-135 488.0 333 81.1
Aa31LG6G80 Aethionema arabicum HOM05D003141 ORTHO05D003633 4.1e-124 449.5 786 42.9
BolC8t48461H Brassica oleracea HOM05D003141 ORTHO05D003633 3.5e-115 419.9 311 76.2
BcaC06g33544 Brassica carinata HOM05D003141 ORTHO05D003633 9.5e-113 411.8 806 41.2
BraA08t33289Z Brassica rapa HOM05D003141 ORTHO05D003633 1.4e-108 397.9 296 76.4
BolC8t48452H Brassica oleracea HOM05D003141 ORTHO05D003633 2.2e-101 374.0 194 98.5
BcaNung00101 Brassica carinata HOM05D003141 ORTHO05D003633 7.3e-81 305.8 1021 32.0
A08p13110 Brassica napus HOM05D001269 ORTHO05D001083 9.3e-60 235.7 190 70.0
BraA08t33285Z Brassica rapa HOM05D003141 ORTHO05D003633 3.8e-53 213.8 116 94.0
Sabra01G0134100 Salix brachista HOM05D003141 ORTHO05D003633 1.5e-46 191.8 211 54.0
Potri.001G157300 Populus trichocarpa HOM05D003141 ORTHO05D003633 1.3e-45 188.7 211 53.1
Potri.003G077600 Populus trichocarpa HOM05D003141 ORTHO05D003633 2.5e-44 184.5 203 54.2
CANSAT21G0191 Cannabis sativa HOM05D003141 ORTHO05D003633 5.5e-44 183.3 208 52.9
Sabra03G0047900 Salix brachista HOM05D003141 ORTHO05D003633 2.1e-43 181.4 170 57.1
Manes.02G040600 Manihot esculenta HOM05D003141 ORTHO05D003633 6.1e-43 179.9 213 51.2
Thecc.03G249800 Theobroma cacao HOM05D003141 ORTHO05D003633 6.1e-43 179.9 224 51.3
COL.COLO4_37160 Corchorus olitorius HOM05D003141 ORTHO05D003633 1.4e-42 178.7 220 51.4
Prupe.5G068000 Prunus persica HOM05D003141 ORTHO05D003633 3.9e-42 177.2 227 49.3
Cpa.g.sc29.173 Carica papaya HOM05D003141 ORTHO05D003633 6.7e-42 176.4 222 51.8
CiPaw.12G051500 Carya illinoinensis HOM05D003141 ORTHO05D003633 6.7e-42 176.4 377 37.7
Haze_07903 Corylus avellana HOM05D003141 ORTHO05D003633 6.7e-42 176.4 221 52.0
QL12p011773 Quercus lobata HOM05D003141 ORTHO05D003633 1.5e-41 175.3 221 52.9
QL12p011944 Quercus lobata HOM05D003141 ORTHO05D003633 1.5e-41 175.3 221 52.9
Duzib205G1689 Durio zibethinus HOM05D003141 ORTHO05D003633 3.3e-41 174.1 207 51.7
Atru.chr9.1295 Acer truncatum HOM05D003141 ORTHO05D003633 5.7e-41 173.3 211 51.7
Ciclev10018443m.g Citrus clementina HOM05D003141 ORTHO05D003633 5.7e-41 173.3 158 60.1
Lj4g0011011 Lotus japonicus HOM05D003141 ORTHO05D003633 7.4e-41 172.9 147 63.3
Phvul.002G057800 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 9.7e-41 172.6 146 64.4
Glyma.01G208600 Glycine max HOM05D003141 ORTHO05D003633 1.3e-40 172.2 169 58.6
Lalb_Chr05g0214411 Lupinus albus HOM05D003141 ORTHO05D003633 1.3e-40 172.2 145 62.8
Phvul.003G221300 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 1.3e-40 172.2 145 64.1
Glyma.11G033600 Glycine max HOM05D003141 ORTHO05D003633 1.7e-40 171.8 177 57.6
Gohir.D11G026200 Gossypium hirsutum HOM05D003141 ORTHO05D003633 3.7e-40 170.6 173 55.5
Gorai.007G028500 Gossypium raimondii HOM05D003141 ORTHO05D003633 3.7e-40 170.6 173 55.5
MD06G1057100 Malus domestica HOM05D003141 ORTHO05D003633 3.7e-40 170.6 197 53.8
GSVIVG01004716001 Vitis vinifera HOM05D003141 ORTHO05D003633 1.1e-39 169.1 218 50.5
VMungo1215G1426 Vigna mungo HOM05D003141 ORTHO05D003633 1.4e-39 168.7 188 55.3
Gohir.D08G187900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 1.8e-39 168.3 216 48.6
arahy.Tifrunner.gnm1.ann1.YK7683 Arachis hypogaea HOM05D003141 ORTHO05D003633 2.4e-39 167.9 147 62.6
arahy.Tifrunner.gnm1.ann1.ZLH3PG Arachis hypogaea HOM05D003141 ORTHO05D003633 2.4e-39 167.9 147 62.6
Duzib068G0714 Durio zibethinus HOM05D003141 ORTHO05D003633 2.4e-39 167.9 203 50.7
Gorai.008G234500 Gossypium raimondii HOM05D003141 ORTHO05D003633 2.4e-39 167.9 226 46.5
Manes.01G081400 Manihot esculenta HOM05D003141 ORTHO05D003633 3.1e-39 167.5 216 49.5
PGR042G4011 Punica granatum HOM05D003141 ORTHO05D003633 4.1e-39 167.2 211 48.8
Gohir.A08G169600 Gossypium hirsutum HOM05D003141 ORTHO05D003633 5.3e-39 166.8 185 52.4
TPR.G37647 Trifolium pratense HOM05D003141 ORTHO05D003633 9.1e-39 166.0 394 35.3
VMungo0251G2467 Vigna mungo HOM05D003141 ORTHO05D003633 1.5e-38 165.2 143 62.9
TWI81G0497 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 2.6e-38 164.5 174 52.3
Gohir.D12G218900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 3.4e-38 164.1 226 45.6
Lalb_Chr09g0330011 Lupinus albus HOM05D003141 ORTHO05D003633 3.4e-38 164.1 142 62.0
Gorai.004G197800 Gossypium raimondii HOM05D003141 ORTHO05D003633 4.5e-38 163.7 216 48.1
MD04G1062800 Malus domestica HOM05D003141 ORTHO05D003633 4.5e-38 163.7 228 47.4
Psat4g072560 Pisum sativum HOM05D003141 ORTHO05D003633 4.5e-38 163.7 191 51.3
TWI15G0894 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 4.5e-38 163.7 221 46.6
CSS0047611 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 1.3e-37 162.2 217 48.8
Ca_21973_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 3.8e-37 160.6 210 48.1
Glyma.05G060300 Glycine max HOM05D003141 ORTHO05D003633 1.4e-36 158.7 148 59.5
TPR.G18122 Trifolium pratense HOM05D003141 ORTHO05D003633 1.4e-36 158.7 146 58.9
TAR636G0976 Trochodendron aralioides HOM05D003141 ORTHO05D003633 1.4e-36 158.7 154 55.8
Ca_24583_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 2.5e-36 157.9 146 58.9
Lj2g0024874 Lotus japonicus HOM05D003141 ORTHO05D003633 2.5e-36 157.9 237 42.6
Sed0019628 Sechium edule HOM05D003141 ORTHO05D003633 2.5e-36 157.9 142 60.6
TAR374G0926 Trochodendron aralioides HOM05D003141 ORTHO05D003633 2.5e-36 157.9 154 57.1
Dinv21645 Davidia involucrata HOM05D003141 ORTHO05D003633 3.2e-36 157.5 206 50.5
Nn6g33922 Nelumbo nucifera HOM05D003141 ORTHO05D003633 3.2e-36 157.5 143 58.0
Psat2g177640 Pisum sativum HOM05D003141 ORTHO05D003633 3.2e-36 157.5 189 52.4
Lalb_Chr05g0221221 Lupinus albus HOM05D003141 ORTHO05D003633 4.2e-36 157.1 147 59.9
TAR629G2174 Trochodendron aralioides HOM05D003141 ORTHO05D003633 4.2e-36 157.1 198 51.5
TAR629G2689 Trochodendron aralioides HOM05D003141 ORTHO05D003633 4.2e-36 157.1 198 51.5
Lj8A264T56 Lonicera japonica HOM05D003141 ORTHO05D003633 5.5e-36 156.8 148 59.5
RcHm_v2.0_Chr7g0203541 Rosa chinensis HOM05D003141 ORTHO05D003633 1.2e-35 155.6 225 47.6
SGA_v2.0_scaffold199G41175 Striga asiatica HOM05D003141 ORTHO05D003633 1.2e-35 155.6 148 58.1
Medtr4g100800 Medicago truncatula HOM05D003141 ORTHO05D003633 4.7e-35 153.7 186 53.2
FAN08G3437 Fragaria x ananassa HOM05D003141 ORTHO05D003633 8.0e-35 152.9 531 31.1
Dinv39155 Davidia involucrata HOM05D003141 ORTHO05D003633 1.0e-34 152.5 214 49.5
Medtr5g012780 Medicago truncatula HOM05D003141 ORTHO05D003633 1.4e-34 152.1 140 59.3
Rhsim07G0109900 Rhododendron simsii HOM05D000370 ORTHO05D007301 1.8e-34 151.8 129 64.3
Gohir.A12G216300 Gossypium hirsutum HOM05D003141 ORTHO05D003633 2.3e-34 151.4 513 32.7
CSS0026981 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 3.0e-34 151.0 147 59.2
CsaV3_3G002610 Cucumis sativus L. HOM05D003141 ORTHO05D003633 3.9e-34 150.6 208 47.6
ClCG10G002580 Citrullus lanatus HOM05D003141 ORTHO05D003633 5.2e-34 150.2 245 42.4
MELO3C013931.2 Cucumis melo HOM05D003141 ORTHO05D003633 5.2e-34 150.2 250 42.8
FAN13G0222 Fragaria x ananassa HOM05D003141 ORTHO05D003633 5.2e-34 150.2 543 29.7
Eucgr.D02089 Eucalyptus grandis HOM05D003141 ORTHO05D003633 6.7e-34 149.8 163 51.5
FvH4_5g19090 Fragaria vesca HOM05D003141 ORTHO05D003633 6.7e-34 149.8 528 30.3
FAN18G0989 Fragaria x ananassa HOM05D003141 ORTHO05D003633 6.7e-34 149.8 528 30.3
Solyc08g078530.4 Solanum lycopersicum HOM05D003141 ORTHO05D003633 1.1e-33 149.1 169 52.7
Sopen08g027010 Solanum pennellii HOM05D003141 ORTHO05D003633 2.0e-33 148.3 169 52.7
MSTRG.25519 Avicennia marina HOM05D003141 ORTHO05D003633 2.6e-33 147.9 119 62.2
Actinidia14419 Actinidia chinensis HOM05D003141 ORTHO05D003633 3.3e-33 147.5 167 50.9
Hma1.2p1_0316F.1_g123020 Hydrangea macrophylla HOM05D003141 ORTHO05D003633 3.3e-33 147.5 146 58.2
Nn1g00964 Nelumbo nucifera HOM05D003141 ORTHO05D003633 4.4e-33 147.1 143 55.2
MSTRG.12108 Avicennia marina HOM05D003141 ORTHO05D003633 5.7e-33 146.7 142 54.9
FAN04G0074 Fragaria x ananassa HOM05D003141 ORTHO05D003633 5.7e-33 146.7 529 30.4
SGA_v2.0_scaffold104G30161 Striga asiatica HOM05D003141 ORTHO05D003633 9.7e-33 146.0 142 54.9
SalBow6G4258 Salvia bowleyana HOM05D003141 ORTHO05D003633 2.2e-32 144.8 118 62.7
Migut.A01111 Erythranthe guttata HOM05D003141 ORTHO05D003633 8.2e-32 142.9 161 49.7
Oeu019602.2 Olea europaea HOM05D003141 ORTHO05D003633 1.1e-31 142.5 210 44.3
Oeu020432.4 Olea europaea HOM05D003141 ORTHO05D003633 1.6e-30 138.7 218 44.5
Sc07g0009290 Simmondsia chinensis HOM05D003141 ORTHO05D003633 1.6e-30 138.7 179 48.0
EL10Ac5g12387 Beta vulgaris HOM05D003141 ORTHO05D003633 2.0e-30 138.3 119 60.5
CAN.G1058.41 Capsicum annuum HOM05D003141 ORTHO05D003633 5.9e-30 136.7 175 49.7
Nitab4.5_0001381g0110 Nicotiana tabacum HOM05D003141 ORTHO05D003633 5.9e-30 136.7 175 49.7
Nitab4.5_0002289g0020 Nicotiana tabacum HOM05D003141 ORTHO05D003633 1.0e-29 136.0 175 49.7
AUR62019955 Chenopodium quinoa HOM05D003141 ORTHO05D003633 1.3e-29 135.6 171 48.5
Lj2C219G10 Lonicera japonica HOM05D003141 ORTHO05D003633 2.9e-29 134.4 138 55.8
DCAR_027770 Daucus carota HOM05D003141 ORTHO05D003633 3.8e-29 134.0 229 39.7
PSO170G6315 Papaver somniferum HOM05D003141 ORTHO05D003633 6.5e-29 133.3 183 49.2
Aqoxy7G00802 Aquilegia oxysepala HOM05D003141 ORTHO05D003633 8.5e-29 132.9 143 52.4
MBI04_g09516_MAGBIO Magnolia biondii HOM05D003141 ORTHO05D003633 8.5e-29 132.9 209 43.1
Peaxi162Scf00209g00005 Petunia axillaris HOM05D003141 ORTHO05D003633 8.5e-29 132.9 142 54.2
Ah.12g053640 Amaranthus hybridus HOM05D003141 ORTHO05D003633 1.5e-28 132.1 150 51.3
AUR62007092 Chenopodium quinoa HOM05D003141 ORTHO05D003633 5.5e-28 130.2 207 44.9
Hund14553 Selenicereus undatus HOM05D003141 ORTHO05D003633 1.2e-27 129.0 202 43.6
Cc08_g12310 Coffea canephora HOM05D003141 ORTHO05D003633 4.7e-27 127.1 570 27.9
vmacro00195 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 6.1e-27 126.7 171 46.8
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 1.0e-26 125.9 238 40.3
unitig_21.g20317 Utricularia gibba HOM05D003141 ORTHO05D003633 4.0e-26 124.0 256 35.5
unitig_744.g24473 Utricularia gibba HOM05D003141 ORTHO05D003633 6.7e-26 123.2 142 48.6
ECA233G3821 Erigeron canadensis HOM05D003141 ORTHO05D003633 2.0e-25 121.7 229 39.3
Lsat_1_v5_gn_6_90740 Lactuca sativa HOM05D003141 ORTHO05D003633 2.6e-25 121.3 219 41.6
ECA240G2052 Erigeron canadensis HOM05D003141 ORTHO05D003633 3.3e-25 120.9 132 52.3
CDE04G1375 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 4.4e-25 120.6 179 41.3
CDE02G1173 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 2.8e-24 117.9 189 40.7
DCAR_006836 Daucus carota HOM05D003141 ORTHO05D003633 8.2e-24 116.3 507 29.8
THA.LOC104806728 Tarenaya hassleriana HOM05D003141 ORTHO05D003633 1.8e-23 115.2 204 40.2
SHI20297 Sapria himalayana HOM05D003141 ORTHO05D003633 5.3e-23 113.6 156 41.0
ATR0317G002 Amborella trichopoda HOM05D003141 ORTHO05D003633 3.5e-22 110.9 220 36.8
Zm00001eb391270 Zea mays HOM05D003141 ORTHO05D003633 5.9e-22 110.2 207 39.1
Os10g0559700 Oryza sativa ssp. japonica HOM05D003141 ORTHO05D003633 3.8e-21 107.5 198 38.4
Sc22g0000930 Simmondsia chinensis HOM05D003141 ORTHO05D003633 5.5e-20 103.6 117 50.4
HanXRQChr17g0549311 Helianthus annuus HOM05D003141 ORTHO05D003633 1.6e-19 102.1 166 44.0
BolC8t48451H Brassica oleracea HOM05D003141 ORTHO05D003633 6.3e-16 90.1 44 100.0
HanXRQChr16g0510701 Helianthus annuus HOM05D003141 ORTHO05D003633 2.4e-15 88.2 231 35.9
PSO017G2158 Papaver somniferum HOM05D003141 ORTHO05D003633 7.0e-15 86.7 533 26.5
Psat4g091200 Pisum sativum HOM05D003141 ORTHO05D003633 3.5e-14 84.3 140 44.3
Psat2g028160 Pisum sativum HOM05D003141 ORTHO05D003633 1.1e-12 79.3 144 44.4
Psat4g076880 Pisum sativum HOM05D003141 ORTHO05D003633 3.3e-12 77.8 86 50.0
HanXRQChr03g0087821 Helianthus annuus HOM05D003141 ORTHO05D003633 8.0e-11 73.2 531 24.3
Psat4g091400 Pisum sativum HOM05D003141 ORTHO05D003633 5.2e-10 70.5 131 42.0
HPP92_022418 Vanilla planifolia HOM05D003141 ORTHO05D003633 4.4e-09 67.4 55 58.2


User provided reference genes

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