Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 1.1e-26 122.5 60 100.0
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 1.1e-26 122.5 60 100.0
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 1.1e-26 122.5 60 100.0
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 5.2e-24 113.6 55 100.0
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 7.5e-23 109.8 55 96.4
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 2.9e-22 107.8 55 96.4
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 6.4e-22 106.7 55 94.5
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 6.4e-22 106.7 55 94.5
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 8.3e-22 106.3 55 92.7
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 1.4e-21 105.5 55 92.7
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 1.4e-21 105.5 55 92.7
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 1.9e-21 105.1 56 94.6
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 3.2e-21 104.4 55 92.7
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 7.0e-21 103.2 55 90.9
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 1.3e-19 99.0 55 87.3
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 1.3e-19 99.0 55 87.3
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 5.0e-19 97.1 54 87.0
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 2.5e-18 94.7 56 82.1
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 1.6e-17 92.0 55 81.8
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 3.6e-17 90.9 56 75.0
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 6.2e-17 90.1 55 78.2
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 6.2e-17 90.1 56 80.4
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 8.9e-16 86.3 54 77.8
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 2.0e-15 85.1 56 75.0
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 2.0e-15 85.1 51 78.4
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 3.4e-15 84.3 60 70.0
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 3.4e-15 84.3 53 73.6
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.4e-15 84.0 56 73.2
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 4.4e-15 84.0 56 71.4
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 5.8e-15 83.6 53 73.6
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 5.8e-15 83.6 54 74.1
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 9.8e-15 82.8 55 72.7
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 1.3e-14 82.4 58 74.1
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 1.3e-14 82.4 56 67.9
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.7e-14 82.0 56 71.4
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 1.7e-14 82.0 56 71.4
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.7e-14 82.0 53 73.6
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 2.9e-14 81.3 51 76.5
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 2.9e-14 81.3 58 70.7
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 2.9e-14 81.3 54 70.4
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 3.7e-14 80.9 51 76.5
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 3.7e-14 80.9 58 72.4
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 3.7e-14 80.9 49 79.6
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 4.9e-14 80.5 53 71.7
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 8.3e-14 79.7 51 74.5
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 8.3e-14 79.7 51 74.5
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 8.3e-14 79.7 56 66.1
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 8.3e-14 79.7 56 62.5
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 1.1e-13 79.3 54 72.2
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 1.1e-13 79.3 56 71.4
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 1.4e-13 79.0 55 70.9
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 1.4e-13 79.0 51 78.4
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.4e-13 79.0 51 74.5
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 1.4e-13 79.0 55 74.5
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 2.4e-13 78.2 56 69.6
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.2e-13 77.8 55 69.1
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 3.2e-13 77.8 55 65.5
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 3.2e-13 77.8 59 66.1
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 5.4e-13 77.0 56 67.9
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 5.4e-13 77.0 53 67.9
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 5.4e-13 77.0 54 68.5
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 9.2e-13 76.3 56 66.1
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 1.2e-12 75.9 47 76.6
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 1.2e-12 75.9 51 68.6
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 1.2e-12 75.9 47 74.5
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 2.7e-12 74.7 47 72.3
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 2.7e-12 74.7 51 68.6
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 2.7e-12 74.7 51 68.6
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 2.7e-12 74.7 37 97.3
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.5e-12 74.3 57 68.4
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 4.6e-12 73.9 56 64.3
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 4.6e-12 73.9 56 64.3
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 7.8e-12 73.2 53 69.8
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.0e-11 72.8 56 66.1
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 1.7e-11 72.0 41 82.9
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 3.0e-11 71.2 51 72.5
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 3.0e-11 71.2 60 58.3
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 3.9e-11 70.9 46 71.7
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 6.6e-11 70.1 56 62.5
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 8.6e-11 69.7 56 62.5
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 1.5e-10 68.9 61 59.0
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 3.3e-10 67.8 41 75.6
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 3.3e-10 67.8 75 52.0
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 2.1e-09 65.1 88 46.6
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.1e-08 62.8 56 53.6


User provided reference genes

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