Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 1.6e-264 915.6 481 100.0
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 8.1e-253 876.7 479 97.3
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 6.1e-224 780.8 479 86.2
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 9.1e-220 766.9 483 87.4
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 1.0e-162 577.4 504 70.0
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 1.4e-127 460.7 485 60.0
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 5.3e-103 379.0 491 51.9
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 6.1e-99 365.5 501 50.9
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 1.0e-98 364.8 517 51.5
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 1.4e-98 364.4 487 53.0
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 1.0e-90 338.2 486 49.4
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 3.1e-87 326.6 495 46.9
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 5.4e-87 325.9 485 46.6
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 3.3e-36 157.1 224 49.6
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 2.8e-35 154.1 496 31.0
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 1.0e-29 135.6 569 29.7
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 3.9e-29 133.7 491 29.9
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 8.7e-29 132.5 503 30.2
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 4.8e-27 126.7 518 27.6
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 1.8e-26 124.8 562 27.8
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 2.9e-24 117.5 543 26.7
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 4.9e-24 116.7 554 27.4
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 3.2e-23 114.0 529 27.0
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 9.3e-23 112.5 415 29.9
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 1.6e-22 111.7 455 26.8
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.1e-22 111.3 552 27.5
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 3.5e-22 110.5 445 28.1
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 5.1e-21 106.7 544 26.1
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 1.1e-20 105.5 427 29.0
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 5.6e-20 103.2 439 28.2
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 1.6e-19 101.7 321 32.1
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.8e-19 100.9 541 27.4
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.8e-19 100.9 566 27.2
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 1.4e-18 98.6 408 28.7
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 4.0e-18 97.1 439 26.7
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 5.3e-18 96.7 424 27.6
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 5.3e-18 96.7 408 26.5
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 9.0e-18 95.9 512 26.2
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 1.5e-17 95.1 401 26.7
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 2.6e-17 94.4 457 24.7
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 4.5e-17 93.6 460 27.0
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 2.2e-16 91.3 419 27.7
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 2.9e-16 90.9 346 27.7
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 3.8e-16 90.5 437 27.9
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 4.9e-16 90.1 462 25.5
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 8.4e-16 89.4 423 26.2
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 8.4e-16 89.4 423 26.2
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 8.4e-16 89.4 400 27.8
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 1.4e-15 88.6 430 27.9
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 1.4e-15 88.6 430 27.9
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 3.2e-15 87.4 440 27.7
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 4.2e-15 87.0 433 26.3
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 4.2e-15 87.0 497 25.6
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 1.2e-14 85.5 404 25.2
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 3.5e-14 84.0 537 25.5
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 6.0e-14 83.2 517 25.0
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 7.9e-14 82.8 349 30.7
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 1.3e-13 82.0 544 25.2
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 2.3e-13 81.3 506 26.5
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 2.3e-13 81.3 525 25.5
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 3.9e-13 80.5 503 26.2
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 5.1e-13 80.1 415 27.2
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 8.7e-13 79.3 270 31.9
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 8.7e-13 79.3 436 26.1
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 8.7e-13 79.3 329 30.7
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 8.7e-13 79.3 506 24.7
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 1.5e-12 78.6 415 25.8
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 5.7e-12 76.6 397 26.4
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 7.4e-12 76.3 411 25.5
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 7.4e-12 76.3 408 27.2
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 7.4e-12 76.3 339 26.5
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 2.8e-11 74.3 399 24.3
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 2.8e-11 74.3 496 25.0
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 1.8e-10 71.6 525 24.4
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 4.1e-10 70.5 445 23.8
AL6G36200 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 6.9e-10 69.7 53 67.9
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 1.5e-09 68.6 118 38.1
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 2.0e-09 68.2 587 24.7
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 2.0e-09 68.2 428 25.7
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 7.6e-09 66.2 198 30.3
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 7.6e-09 66.2 130 38.5
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 1.0e-08 65.9 317 25.2
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 1.0e-08 65.9 335 26.0
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 1.7e-08 65.1 341 23.8
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 2.2e-08 64.7 424 25.7
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 2.9e-08 64.3 307 24.8
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 5.0e-08 63.5 516 24.6
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 1.1e-07 62.4 129 36.4
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 1.4e-07 62.0 309 28.8
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.9e-07 61.6 310 27.7
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 2.5e-07 61.2 437 25.4
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 7.2e-07 59.7 412 24.0
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 7.2e-07 59.7 167 30.5
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.2e-06 58.9 306 26.5
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 1.6e-06 58.5 131 32.8
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 3.5e-06 57.4 162 29.6
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 4.6e-06 57.0 301 25.9
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 7.9e-06 56.2 162 29.6


User provided reference genes

Program Settings