Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 4.2e-80 301.2 144 100.0
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 3.0e-49 198.7 99 96.0
C08p42990 Brassica napus HOM05D004340 ORTHO05D014919 4.0e-46 188.3 119 79.0
BolC8t51851H Brassica oleracea HOM05D004340 ORTHO05D014919 5.4e-35 151.4 82 92.7
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 3.1e-30 135.6 79 84.8
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 5.8e-29 131.3 79 82.3
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 3.2e-27 125.6 80 81.2
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 4.1e-27 125.2 86 76.7
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 5.4e-27 124.8 77 80.5
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 4.6e-26 121.7 81 77.8
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 2.3e-25 119.4 80 78.8
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 3.0e-25 119.0 78 76.9
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 8.7e-25 117.5 79 75.9
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 2.5e-24 115.9 78 73.1
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 4.3e-24 115.2 78 75.6
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 1.4e-22 110.2 79 72.2
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 5.8e-21 104.8 78 71.8
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 2.2e-20 102.8 78 70.5
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 2.9e-20 102.4 78 69.2
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 4.9e-20 101.7 78 66.7
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 1.1e-14 84.0 95 47.4
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 1.4e-14 83.6 74 52.7
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 3.1e-14 82.4 99 45.5
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 6.9e-14 81.3 75 49.3
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 6.9e-14 81.3 73 52.1
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.2e-13 80.5 74 52.7
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 1.2e-13 80.5 74 54.1
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 1.5e-13 80.1 75 52.0
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 1.5e-13 80.1 76 51.3
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 2.0e-13 79.7 75 50.7
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 3.4e-13 79.0 74 51.4
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 3.4e-13 79.0 71 53.5
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 4.5e-13 78.6 70 54.3
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 4.5e-13 78.6 76 51.3
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 4.5e-13 78.6 82 54.9
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 4.5e-13 78.6 85 49.4
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 5.8e-13 78.2 75 52.0
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.7e-12 76.6 96 42.7
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.7e-12 76.6 96 42.7
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 1.7e-12 76.6 74 47.3
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 1.7e-12 76.6 95 44.2
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 1.7e-12 76.6 95 44.2
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 1.7e-12 76.6 74 52.7
BcaC07g41290 Brassica carinata HOM05D004340 ORTHO05D014919 2.2e-12 76.3 35 91.4
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 2.2e-12 76.3 85 48.2
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 2.2e-12 76.3 74 50.0
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 2.9e-12 75.9 105 38.1
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 3.8e-12 75.5 105 38.1
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 4.9e-12 75.1 72 51.4
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 4.9e-12 75.1 72 51.4
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 4.9e-12 75.1 73 49.3
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 4.9e-12 75.1 90 41.1
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 6.4e-12 74.7 74 50.0
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 6.4e-12 74.7 76 48.7
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 8.4e-12 74.3 96 43.8
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 1.1e-11 73.9 74 48.6
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 1.9e-11 73.2 74 50.0
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 2.4e-11 72.8 74 48.6
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 2.4e-11 72.8 70 50.0
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 3.2e-11 72.4 69 49.3
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 3.2e-11 72.4 70 52.9
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 5.4e-11 71.6 74 47.3
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 5.4e-11 71.6 70 50.0
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 7.1e-11 71.2 74 43.2
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 1.6e-10 70.1 71 47.9
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 2.1e-10 69.7 74 45.9
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 2.1e-10 69.7 74 45.9
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 2.1e-10 69.7 71 46.5
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 2.7e-10 69.3 74 47.3
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 2.7e-10 69.3 74 47.3
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 2.7e-10 69.3 74 43.2
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 3.5e-10 68.9 71 45.1
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 3.5e-10 68.9 74 43.2
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 3.5e-10 68.9 77 41.6
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 4.6e-10 68.6 81 45.7
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 6.0e-10 68.2 100 41.0
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 6.0e-10 68.2 70 44.3
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 6.0e-10 68.2 71 47.9
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 6.0e-10 68.2 75 44.0
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 7.9e-10 67.8 71 43.7
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 7.9e-10 67.8 72 47.2
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 7.9e-10 67.8 70 48.6
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 1.0e-09 67.4 75 49.3
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 1.3e-09 67.0 74 44.6
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 1.3e-09 67.0 71 49.3
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 2.3e-09 66.2 74 44.6
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 3.0e-09 65.9 70 50.0
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 3.0e-09 65.9 70 48.6
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 6.7e-09 64.7 54 57.4
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 6.7e-09 64.7 70 42.9
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 1.1e-08 63.9 69 42.0
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.5e-08 63.5 70 45.7
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 1.5e-08 63.5 80 41.2
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 1.5e-08 63.5 52 50.0
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 1.5e-08 63.5 69 42.0
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 2.5e-08 62.8 74 40.5
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 3.3e-08 62.4 69 46.4
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 9.6e-08 60.8 72 45.8
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 9.6e-08 60.8 72 43.1
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 9.6e-08 60.8 69 46.4
MD08G1233100 Malus domestica HOM05D003275 ORTHO05D003732 2.8e-07 59.3 36 66.7
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 2.8e-07 59.3 70 40.0
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 3.7e-07 58.9 74 41.9
CiPaw.05G048000 Carya illinoinensis HOM05D003275 ORTHO05D003732 3.7e-07 58.9 47 55.3
Thhalv10018974m.g Eutrema salsugineum HOM05D003275 ORTHO05D003732 3.7e-07 58.9 36 66.7
BcaB03g15596 Brassica carinata HOM05D003275 ORTHO05D003732 4.8e-07 58.5 36 66.7
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 4.8e-07 58.5 76 43.4
FvH4_5g29250 Fragaria vesca HOM05D003275 ORTHO05D003732 4.8e-07 58.5 36 66.7
FAN08G1391 Fragaria x ananassa HOM05D003275 ORTHO05D003732 4.8e-07 58.5 36 66.7
TAR381G0360 Trochodendron aralioides HOM05D003275 ORTHO05D003732 4.8e-07 58.5 47 57.4
Rhsim05G0119500 Rhododendron simsii HOM05D003275 ORTHO05D003732 6.2e-07 58.2 36 63.9
Sp5g26350 Schrenkiella parvula HOM05D003275 ORTHO05D003732 6.2e-07 58.2 36 63.9
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 8.1e-07 57.8 88 44.3
GSVIVG01022875001 Vitis vinifera HOM05D003275 ORTHO05D003732 8.1e-07 57.8 36 63.9
BcaC08g45789 Brassica carinata HOM05D000145 ORTHO05D003732 1.1e-06 57.4 36 63.9
A07p30830 Brassica napus HOM05D000145 ORTHO05D003732 1.1e-06 57.4 36 63.9
C06p35730 Brassica napus HOM05D000145 ORTHO05D003732 1.1e-06 57.4 36 63.9
BolC6t38696H Brassica oleracea HOM05D000145 ORTHO05D003732 1.1e-06 57.4 36 63.9
BraA07t30720Z Brassica rapa HOM05D000145 ORTHO05D003732 1.1e-06 57.4 36 63.9
RcHm_v2.0_Chr7g0222011 Rosa chinensis HOM05D003275 ORTHO05D003732 1.1e-06 57.4 36 63.9
THA.LOC104798496 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 1.1e-06 57.4 36 63.9
TWI14G0966 Tripterygium wilfordii HOM05D003275 ORTHO05D003732 1.1e-06 57.4 36 63.9
MELO3C014372.2 Cucumis melo HOM05D003275 ORTHO05D003732 1.4e-06 57.0 41 61.0
Duzib132G0935 Durio zibethinus HOM05D003275 ORTHO05D003732 1.4e-06 57.0 36 63.9
Thecc.02G087700 Theobroma cacao HOM05D003275 ORTHO05D003732 1.4e-06 57.0 47 53.2
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.4e-06 57.0 75 41.3
Aa31LG4G9320 Aethionema arabicum HOM05D003275 ORTHO05D003732 1.8e-06 56.6 47 51.1
AL2G30800 Arabidopsis lyrata HOM05D003275 ORTHO05D003732 1.8e-06 56.6 36 63.9
BcaB03g14876 Brassica carinata HOM05D003275 ORTHO05D003732 1.8e-06 56.6 36 63.9
Eucgr.I02729 Eucalyptus grandis HOM05D003275 ORTHO05D003732 1.8e-06 56.6 36 61.1
Nn5g28309 Nelumbo nucifera HOM05D003275 ORTHO05D003732 1.8e-06 56.6 35 65.7
ATR0584G052 Amborella trichopoda HOM05D003275 ORTHO05D003732 2.4e-06 56.2 47 48.9
Ciclev10002064m.g Citrus clementina HOM05D003275 ORTHO05D003732 2.4e-06 56.2 36 61.1
Nn1g04518 Nelumbo nucifera HOM05D004340 ORTHO05D014919 2.4e-06 56.2 53 50.9
Manes.07G017000 Manihot esculenta HOM05D003275 ORTHO05D003732 3.1e-06 55.8 36 61.1
Oeu008899.2 Olea europaea HOM05D003275 ORTHO05D003732 3.1e-06 55.8 36 61.1
Prupe.1G571000 Prunus persica HOM05D003275 ORTHO05D003732 3.1e-06 55.8 36 61.1
arahy.Tifrunner.gnm1.ann1.4G20NP Arachis hypogaea HOM05D003275 ORTHO05D003732 4.0e-06 55.5 36 61.1
arahy.Tifrunner.gnm1.ann1.9MB0YU Arachis hypogaea HOM05D003275 ORTHO05D003732 4.0e-06 55.5 36 61.1
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 4.0e-06 55.5 76 38.2
Cpa.g.sc113.53 Carica papaya HOM05D003275 ORTHO05D003732 4.0e-06 55.5 36 58.3
PGR142G1307 Punica granatum HOM05D003275 ORTHO05D003732 4.0e-06 55.5 36 61.1
SHI21663 Sapria himalayana HOM05D004340 ORTHO05D014919 4.0e-06 55.5 49 49.0
THA.LOC104812760 Tarenaya hassleriana HOM05D003275 ORTHO05D003732 4.0e-06 55.5 36 61.1
Actinidia26152 Actinidia chinensis HOM05D003275 ORTHO05D003732 5.3e-06 55.1 36 61.1
Carub.0002s1807 Capsella rubella HOM05D003275 ORTHO05D003732 5.3e-06 55.1 36 63.9
Gohir.A13G035200 Gossypium hirsutum HOM05D003275 ORTHO05D003732 5.3e-06 55.1 36 61.1
Gohir.D13G033600 Gossypium hirsutum HOM05D003275 ORTHO05D003732 5.3e-06 55.1 36 61.1
Gorai.013G038000 Gossypium raimondii HOM05D003275 ORTHO05D003732 5.3e-06 55.1 36 61.1
Nn5g28307 Nelumbo nucifera HOM05D003275 ORTHO05D003732 5.3e-06 55.1 47 48.9
SEGI_25464 Sequoiadendron giganteum HOM05D003275 ORTHO05D003732 5.3e-06 55.1 47 51.1
Psat1g221280 Pisum sativum HOM05D003275 ORTHO05D003732 6.9e-06 54.7 36 61.1
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 6.9e-06 54.7 71 47.9
SGA_v2.0_scaffold110G31330 Striga asiatica HOM05D003275 ORTHO05D003732 6.9e-06 54.7 47 48.9
CANSAT11G1659 Cannabis sativa HOM05D003275 ORTHO05D003732 9.0e-06 54.3 36 61.1
CARHR064460 Cardamine hirsuta HOM05D003275 ORTHO05D003732 9.0e-06 54.3 36 61.1
COL.COLO4_11783 Corchorus olitorius HOM05D003275 ORTHO05D003732 9.0e-06 54.3 36 58.3
CsaV3_6G037450 Cucumis sativus L. HOM05D003275 ORTHO05D003732 9.0e-06 54.3 41 58.5
FAN18G2082 Fragaria x ananassa HOM05D003275 ORTHO05D003732 9.0e-06 54.3 27 85.2


User provided reference genes

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