Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37993 Brassica carinata HOM05D006632 ORTHO05D008224 1.4e-108 396.4 203 100.0
BolC8t48376H Brassica oleracea HOM05D006632 ORTHO05D008224 9.1e-105 383.6 198 99.5
A08p12540 Brassica napus HOM05D006632 ORTHO05D008224 1.4e-100 369.8 198 93.9
BraA08t33245Z Brassica rapa HOM05D006632 ORTHO05D008224 1.4e-100 369.8 198 93.9
Sp7g15070 Schrenkiella parvula HOM05D006632 ORTHO05D008224 1.6e-93 346.3 199 86.9
CARHR222910 Cardamine hirsuta HOM05D006632 ORTHO05D008224 5.2e-92 341.3 197 86.8
Carub.0007s2499 Capsella rubella HOM05D006632 ORTHO05D008224 1.5e-91 339.7 198 85.4
AL7G38450 Arabidopsis lyrata HOM05D006632 ORTHO05D008224 4.4e-91 338.2 198 85.9
Thhalv10026162m.g Eutrema salsugineum HOM05D006632 ORTHO05D008224 8.3e-90 334.0 200 85.5
Aa31LG2G12620 Aethionema arabicum HOM05D006632 ORTHO05D008224 1.8e-89 332.8 197 83.8
AT4G16510 Arabidopsis thaliana HOM05D006632 ORTHO05D008224 9.2e-89 330.5 197 83.8
Gohir.D12G222100 Gossypium hirsutum HOM05D006632 ORTHO05D008224 3.3e-78 295.4 201 77.1
Gorai.008G238100 Gossypium raimondii HOM05D006632 ORTHO05D008224 3.3e-78 295.4 201 77.1
HanXRQChr03g0088651 Helianthus annuus HOM05D006632 ORTHO05D008224 1.2e-77 293.5 190 77.9
Haze_07882 Corylus avellana HOM05D006632 ORTHO05D008224 2.1e-77 292.7 196 74.5
Gohir.A12G219900 Gossypium hirsutum HOM05D006632 ORTHO05D008224 2.1e-77 292.7 201 76.6
Cfa012746 Carpinus fangiana HOM05D006632 ORTHO05D008224 2.8e-77 292.4 196 74.5
CANSAT21G1011 Cannabis sativa HOM05D006632 ORTHO05D008224 3.6e-77 292.0 198 74.2
Solyc08g007410.4 Solanum lycopersicum HOM05D006632 ORTHO05D008224 4.7e-77 291.6 196 74.5
Sopen08g003360 Solanum pennellii HOM05D006632 ORTHO05D008224 4.7e-77 291.6 196 74.0
THA.LOC104814709 Tarenaya hassleriana HOM05D006632 ORTHO05D008224 8.1e-77 290.8 194 76.3
Thecc.03G254100 Theobroma cacao HOM05D006632 ORTHO05D008224 3.1e-76 288.9 202 74.3
Prupe.5G072600 Prunus persica HOM05D006632 ORTHO05D008224 5.2e-76 288.1 199 74.4
Ciclev10022042m.g Citrus clementina HOM05D006632 ORTHO05D008224 8.9e-76 287.3 204 72.5
Lsat_1_v5_gn_6_91561 Lactuca sativa HOM05D006632 ORTHO05D008224 1.5e-75 286.6 191 75.4
Duzib205G0315 Durio zibethinus HOM05D006632 ORTHO05D008224 2.6e-75 285.8 201 72.1
Glyma.05G058200 Glycine max HOM05D006632 ORTHO05D008224 2.6e-75 285.8 200 72.5
Hma1.2p1_0916F.1_g236520 Hydrangea macrophylla HOM05D006632 ORTHO05D008224 9.8e-75 283.9 202 71.8
MELO3C013948.2 Cucumis melo HOM05D006632 ORTHO05D008224 1.7e-74 283.1 197 72.1
FAN18G2132 Fragaria x ananassa HOM05D006632 ORTHO05D008224 1.7e-74 283.1 194 74.7
VMungo0251G2371 Vigna mungo HOM05D006632 ORTHO05D008224 1.7e-74 283.1 200 71.5
Phvul.003G219500 Phaseolus vulgaris HOM05D006632 ORTHO05D008224 2.9e-74 282.3 200 71.5
PGSC0003DMG400012506 Solanum tuberosum HOM05D006632 ORTHO05D008224 2.9e-74 282.3 195 71.8
TPR.G37669 Trifolium pratense HOM05D006632 ORTHO05D008224 2.9e-74 282.3 201 72.1
RcHm_v2.0_Chr7g0202881 Rosa chinensis HOM05D006632 ORTHO05D008224 3.7e-74 282.0 208 69.7
TWI81G0482 Tripterygium wilfordii HOM05D006632 ORTHO05D008224 3.7e-74 282.0 204 70.1
ClCG10G002780 Citrullus lanatus HOM05D006632 ORTHO05D008224 4.9e-74 281.6 197 71.1
Lalb_Chr05g0225741 Lupinus albus HOM05D006632 ORTHO05D008224 4.9e-74 281.6 200 71.0
Oeu062975.1 Olea europaea HOM05D006632 ORTHO05D008224 2.4e-73 279.3 201 70.6
Lj2A215T22 Lonicera japonica HOM05D006632 ORTHO05D008224 3.2e-73 278.9 193 72.5
Potri.008G135980 Populus trichocarpa HOM05D006632 ORTHO05D008224 3.2e-73 278.9 194 71.6
Potri.003G111100 Populus trichocarpa HOM05D006632 ORTHO05D008224 4.1e-73 278.5 195 71.3
arahy.Tifrunner.gnm1.ann1.UQJ0AM Arachis hypogaea HOM05D006632 ORTHO05D008224 7.1e-73 277.7 197 70.6
arahy.Tifrunner.gnm1.ann1.E5X9TE Arachis hypogaea HOM05D006632 ORTHO05D008224 9.2e-73 277.3 197 70.6
Nitab4.5_0001707g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.2e-72 276.9 212 66.0
CSS0044555 Camellia sinensis var. sinensis HOM05D006632 ORTHO05D008224 2.1e-72 276.2 204 70.1
Nitab4.5_0000312g0210 Nicotiana tabacum HOM05D006632 ORTHO05D008224 2.1e-72 276.2 194 70.6
Sed0019633 Sechium edule HOM05D006632 ORTHO05D008224 2.1e-72 276.2 197 71.1
GSVIVG01001305001 Vitis vinifera HOM05D006632 ORTHO05D008224 2.1e-72 276.2 201 68.2
Atru.chr9.1340 Acer truncatum HOM05D006632 ORTHO05D008224 2.7e-72 275.8 201 69.2
CiPaw.11G152400 Carya illinoinensis HOM05D006632 ORTHO05D008224 2.7e-72 275.8 200 70.0
Cc08_g12700 Coffea canephora HOM05D006632 ORTHO05D008224 2.7e-72 275.8 203 70.4
Lj4g0001078 Lotus japonicus HOM05D006632 ORTHO05D008224 2.7e-72 275.8 198 70.2
PSO063G6697 Papaver somniferum HOM05D006632 ORTHO05D008224 6.0e-72 274.6 198 72.7
Psat4g070160 Pisum sativum HOM05D006632 ORTHO05D008224 6.0e-72 274.6 195 72.8
Nn6g34002 Nelumbo nucifera HOM05D006632 ORTHO05D008224 1.7e-71 273.1 200 68.5
PSO782G3692 Papaver somniferum HOM05D006632 ORTHO05D008224 1.7e-71 273.1 198 72.2
FAN04G0341 Fragaria x ananassa HOM05D006632 ORTHO05D008224 3.0e-71 272.3 201 70.6
Nitab4.5_0004059g0060 Nicotiana tabacum HOM05D006632 ORTHO05D008224 3.9e-71 271.9 205 67.3
FAN08G0873 Fragaria x ananassa HOM05D006632 ORTHO05D008224 5.1e-71 271.6 201 70.6
Actinidia05199 Actinidia chinensis HOM05D006632 ORTHO05D008224 1.5e-70 270.0 203 67.0
DCAR_027784 Daucus carota HOM05D006632 ORTHO05D008224 1.5e-70 270.0 209 67.5
PGR042G2887 Punica granatum HOM05D006632 ORTHO05D008224 1.9e-70 269.6 205 66.8
ECA240G2825 Erigeron canadensis HOM05D006632 ORTHO05D008224 2.5e-70 269.2 196 69.4
Medtr4g101100 Medicago truncatula HOM05D006632 ORTHO05D008224 4.3e-70 268.5 208 66.8
CsaV3_3G002820 Cucumis sativus L. HOM05D006632 ORTHO05D008224 7.3e-70 267.7 196 66.8
Rhsim07G0107100 Rhododendron simsii HOM05D006632 ORTHO05D008224 9.5e-70 267.3 202 70.8
FAN13G0450 Fragaria x ananassa HOM05D006632 ORTHO05D008224 2.8e-69 265.8 220 64.5
Sabra03G0077000 Salix brachista HOM05D006632 ORTHO05D008224 2.8e-69 265.8 234 60.3
Manes.01G079200 Manihot esculenta HOM05D006632 ORTHO05D008224 3.6e-69 265.4 206 66.5
Migut.A00961 Erythranthe guttata HOM05D006632 ORTHO05D008224 4.7e-69 265.0 210 65.7
MD06G1061300 Malus domestica HOM05D006632 ORTHO05D008224 1.8e-68 263.1 155 79.4
Eucgr.E00435 Eucalyptus grandis HOM05D006632 ORTHO05D008224 4.0e-68 261.9 211 64.5
Ah.12g056690 Amaranthus hybridus HOM05D006632 ORTHO05D008224 5.2e-68 261.5 203 67.0
EL10Ac5g13049 Beta vulgaris HOM05D006632 ORTHO05D008224 2.0e-67 259.6 192 69.8
CAN.G1227.10 Capsicum annuum HOM05D006632 ORTHO05D008224 7.6e-67 257.7 149 79.9
Aqoxy5G03914 Aquilegia oxysepala HOM05D006632 ORTHO05D008224 9.9e-67 257.3 195 67.7
MSTRG.25531 Avicennia marina HOM05D006632 ORTHO05D008224 1.3e-66 256.9 200 67.5
AUR62039953 Chenopodium quinoa HOM05D006632 ORTHO05D008224 1.3e-66 256.9 189 70.4
HPP92_014478 Vanilla planifolia HOM05D006632 ORTHO05D008224 1.7e-66 256.5 200 65.0
vmacro14091 Vaccinium macrocarpon HOM05D006632 ORTHO05D008224 1.4e-65 253.4 241 59.3
AUR62007500 Chenopodium quinoa HOM05D006632 ORTHO05D008224 2.4e-65 252.7 190 67.9
Os02g0662200 Oryza sativa ssp. japonica HOM05D006632 ORTHO05D008224 1.7e-63 246.5 202 63.4
Rhsim07G0106500 Rhododendron simsii HOM05D006632 ORTHO05D008224 3.0e-63 245.7 269 54.3
unitig_27.g25096 Utricularia gibba HOM05D006632 ORTHO05D008224 3.0e-63 245.7 160 71.9
QL12p012693 Quercus lobata HOM05D006632 ORTHO05D008224 6.6e-63 244.6 180 70.0
CDE02G1947 Ceratophyllum demersum HOM05D006632 ORTHO05D008224 8.6e-63 244.2 177 69.5
Nitab4.5_0017825g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 3.3e-62 242.3 183 65.0
SGA_v2.0_scaffold120G32870 Striga asiatica HOM05D006632 ORTHO05D008224 8.9e-60 234.2 259 53.3
Zm00001eb249830 Zea mays HOM05D006632 ORTHO05D008224 2.0e-59 233.0 203 61.6
SEGI_31519 Sequoiadendron giganteum HOM05D006632 ORTHO05D008224 2.6e-59 232.6 191 60.2
SMO143G0241 Selaginella moellendorffii HOM05D006632 ORTHO05D008224 1.1e-57 227.3 182 60.4
Dinv21617 Davidia involucrata HOM05D006632 ORTHO05D008224 5.4e-57 224.9 195 62.6
Sc01g0008570 Simmondsia chinensis HOM05D006632 ORTHO05D008224 9.3e-57 224.2 134 77.6
Pp3c24_4050 Physcomitrium patens HOM05D006632 ORTHO05D008224 2.1e-56 223.0 152 69.1
Mapoly0121s0036 Marchantia polymorpha HOM05D006632 ORTHO05D008224 6.0e-56 221.5 159 66.0
Peaxi162Scf00102g01151 Petunia axillaris HOM05D006632 ORTHO05D008224 4.3e-54 215.3 203 58.1
Hund14588 Selenicereus undatus HOM05D006632 ORTHO05D008224 4.0e-52 208.8 351 39.9
MD00G1115100 Malus domestica HOM05D006632 ORTHO05D008224 1.1e-49 200.7 212 53.8
CBR_g26463 Chara braunii HOM05D006632 ORTHO05D008224 1.6e-48 196.8 159 59.7
SalBow6G7145 Salvia bowleyana HOM05D006632 ORTHO05D008224 1.6e-48 196.8 150 70.7
Ca_21955_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 2.8e-45 186.0 153 66.0
Ca_22220_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 3.6e-45 185.7 163 62.0
DCAR_004945 Daucus carota HOM05D006632 ORTHO05D008224 6.4e-42 174.9 197 52.3
ATR0564G418 Amborella trichopoda HOM05D006632 ORTHO05D008224 2.3e-39 166.4 161 56.5
Cre07.g338250 Chlamydomonas reinhardtii HOM05D006632 ORTHO05D008224 3.3e-38 162.5 203 44.8
BraA01t02010Z Brassica rapa HOM05D006632 ORTHO05D008224 1.0e-34 151.0 136 61.8
A01p20910 Brassica napus HOM05D006632 ORTHO05D008224 8.4e-34 147.9 136 61.0
C01p26240 Brassica napus HOM05D006632 ORTHO05D008224 7.9e-32 141.4 109 70.6
BolC1t02568H Brassica oleracea HOM05D006632 ORTHO05D008224 7.9e-32 141.4 109 70.6
Dinv39125 Davidia involucrata HOM05D006632 ORTHO05D008224 2.3e-31 139.8 136 60.3
PRCOL_00001140 Prasinoderma coloniale HOM05D006632 ORTHO05D008224 6.7e-31 138.3 159 42.8
MCO15G182 Micromonas commoda HOM05D006632 ORTHO05D008224 6.5e-26 121.7 208 38.0
AagrBONN_evm.TU.Sc2ySwM_117.1014 Anthoceros agrestis HOM05D006632 ORTHO05D008224 3.0e-23 112.8 139 45.3
Cpa.g.sc276.6 Carica papaya HOM05D006632 ORTHO05D008224 3.4e-19 99.4 106 55.7
FvH4_5g00080 Fragaria vesca HOM05D011292 ORTHO05D013599 7.7e-19 98.2 91 61.5
Duzib068G0053 Durio zibethinus HOM05D006632 ORTHO05D008224 2.1e-16 90.1 49 79.6
TAR636G0287 Trochodendron aralioides HOM05D006632 ORTHO05D008224 7.4e-14 81.6 98 52.0
DCAR_004944 Daucus carota HOM05D006632 ORTHO05D008224 6.9e-12 75.1 95 52.6
Potri.001G122501 Populus trichocarpa HOM05D006632 ORTHO05D008224 8.5e-10 68.2 53 58.5
Peaxi162Scf00002g00156 Petunia axillaris HOM05D006632 ORTHO05D008224 7.9e-08 61.6 52 59.6


User provided reference genes

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