Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 2.7e-92 342.0 180 100.0
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 2.6e-87 325.5 180 96.7
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 5.8e-87 324.3 180 96.1
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 8.7e-83 310.5 205 84.4
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 4.5e-79 298.1 180 86.7
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.0e-78 297.0 180 87.8
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 3.8e-78 295.0 180 86.7
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 1.3e-75 286.6 180 82.2
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 2.3e-75 285.8 180 84.4
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 3.3e-74 282.0 184 82.6
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 3.3e-74 282.0 184 82.6
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 5.7e-74 281.2 182 81.3
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 4.8e-73 278.1 183 81.4
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.9e-70 268.9 180 81.7
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.5e-69 265.8 180 75.0
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.1e-64 250.4 180 76.1
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.2e-63 246.9 181 71.8
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 7.2e-61 237.7 180 68.9
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 1.7e-49 199.9 171 63.2
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 2.8e-49 199.1 177 61.6
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 6.3e-49 198.0 177 60.5
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.4e-48 196.8 174 60.9
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.4e-48 196.8 178 59.0
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.8e-48 196.4 171 62.6
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 4.1e-48 195.3 166 62.0
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 9.1e-48 194.1 176 60.8
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.2e-47 193.7 177 59.9
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.2e-47 193.7 169 60.4
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 2.6e-47 192.6 177 60.5
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 7.7e-47 191.0 172 59.9
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 2.2e-46 189.5 175 57.7
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.1e-45 187.2 181 56.4
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.1e-45 187.2 181 56.4
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 7.2e-45 184.5 177 55.4
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.2e-44 183.7 175 57.7
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 1.2e-44 183.7 178 56.7
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 4.0e-43 178.7 175 57.7
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 8.8e-43 177.6 166 55.4
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.0e-42 176.4 163 58.3
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 3.3e-42 175.6 165 57.6
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.3e-42 175.6 172 55.2
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 4.4e-42 175.3 171 53.8
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 9.7e-42 174.1 175 54.9
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 9.7e-42 174.1 162 55.6
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.7e-41 173.3 166 56.6
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.7e-41 173.3 169 59.8
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.8e-41 172.6 178 53.9
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 2.8e-41 172.6 174 55.7
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 3.7e-41 172.2 157 59.2
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 3.7e-41 172.2 157 59.2
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.7e-41 172.2 163 58.3
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 4.8e-41 171.8 165 57.0
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.4e-40 170.2 172 56.4
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 1.4e-40 170.2 163 58.3
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.4e-40 170.2 155 58.7
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.8e-40 169.9 157 59.2
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.8e-40 169.9 202 51.0
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.0e-40 167.9 175 53.1
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.2e-39 167.2 178 52.2
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 2.7e-39 166.0 165 55.2
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 2.7e-39 166.0 163 55.8
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 4.5e-39 165.2 182 54.9
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.0e-38 164.1 157 56.7
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 1.3e-38 163.7 140 60.0
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.3e-38 163.7 173 52.6
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.3e-38 163.7 165 52.7
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.7e-38 163.3 163 55.2
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 1.7e-38 163.3 167 53.3
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.7e-38 163.3 165 53.3
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.9e-38 162.5 172 51.7
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.9e-38 162.5 165 52.7
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 8.5e-38 161.0 163 54.0
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 1.1e-37 160.6 144 59.7
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.9e-37 159.8 131 64.9
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 4.2e-37 158.7 163 52.1
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 4.2e-37 158.7 168 54.2
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 9.4e-37 157.5 176 50.6
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.2e-36 157.1 144 56.9
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.2e-36 157.1 163 53.4
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 2.1e-36 156.4 142 61.3
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.8e-35 153.3 163 50.9
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 4.0e-35 152.1 163 52.1
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 5.2e-35 151.8 168 52.4
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 2.6e-34 149.4 133 56.4
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 4.4e-34 148.7 155 53.5
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.3e-33 147.1 133 57.9
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.3e-33 147.1 158 54.4
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 2.8e-33 146.0 167 49.7
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 2.8e-33 146.0 167 49.7
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 3.7e-33 145.6 164 50.6
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 4.8e-33 145.2 163 49.1
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 4.8e-33 145.2 164 47.6
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 6.3e-33 144.8 159 48.4
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 8.3e-33 144.4 137 56.2
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 2.4e-32 142.9 176 48.3
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 3.1e-32 142.5 147 55.1
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 5.4e-32 141.7 176 47.2
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 5.4e-32 141.7 176 47.2
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 5.4e-32 141.7 175 49.7
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 9.1e-32 141.0 212 42.9
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.6e-31 140.2 163 50.3
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.6e-31 140.2 165 48.5
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 7.7e-31 137.9 154 48.1
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.7e-30 136.7 138 52.9
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.7e-30 136.7 140 52.1
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.7e-30 136.7 176 44.9
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 2.3e-30 136.3 165 46.1
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.9e-30 136.0 156 49.4
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 2.9e-30 136.0 158 49.4
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 5.0e-30 135.2 175 46.9
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 6.5e-30 134.8 142 54.2
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 1.9e-29 133.3 142 50.7
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 2.5e-29 132.9 170 45.3
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 5.5e-29 131.7 194 42.8
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 9.5e-29 131.0 207 42.0
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 9.5e-29 131.0 177 42.9
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.0e-27 127.5 129 53.5
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 2.3e-27 126.3 153 48.4
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.3e-27 126.3 215 40.5
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 8.8e-27 124.4 160 47.5
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.2e-26 124.0 153 48.4
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.4e-26 122.5 145 49.0
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 5.7e-26 121.7 113 58.4
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 9.2e-24 114.4 91 60.4
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 1.2e-23 114.0 163 41.1
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.6e-23 113.6 130 46.9
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.6e-23 113.6 277 33.2
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 5.0e-22 108.6 128 46.1
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 1.1e-21 107.5 143 46.2
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 1.6e-20 103.6 172 39.0
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 6.1e-20 101.7 165 43.0
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 8.0e-20 101.3 172 41.9
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.0e-19 99.4 104 51.9
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 3.4e-18 95.9 86 53.5
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 4.4e-18 95.5 86 61.6
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 2.9e-17 92.8 91 59.3
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.8e-16 90.1 77 54.5
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 4.1e-16 89.0 74 63.5
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 5.4e-16 88.6 117 48.7
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 7.0e-16 88.2 76 57.9
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 9.2e-16 87.8 74 70.3
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 3.5e-15 85.9 74 60.8
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.0e-14 84.3 171 38.0
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.3e-14 83.2 84 58.3
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 1.5e-13 80.5 140 42.1
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 4.7e-12 75.5 81 55.6
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.4e-11 73.9 111 44.1
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 2.0e-10 70.1 62 54.8
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 2.4e-08 63.2 82 48.8
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 2.4e-08 63.2 91 46.2
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 2.7e-07 59.7 144 36.1
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.7e-07 59.7 51 66.7


User provided reference genes

Program Settings