Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.9e-150 535.8 271 100.0
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 6.0e-104 381.3 287 73.9
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 1.3e-101 373.6 287 74.2
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.3e-98 363.6 274 74.5
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 1.3e-98 363.6 288 72.2
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 1.4e-97 360.1 289 70.2
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 1.5e-91 340.1 291 67.4
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 2.6e-91 339.3 289 68.9
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 2.2e-90 336.3 285 70.5
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 2.2e-90 336.3 291 66.3
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 3.2e-89 332.4 217 82.9
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.6e-88 330.1 293 65.9
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 5.0e-82 308.5 284 65.8
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 3.9e-79 298.9 285 64.6
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 2.2e-77 293.1 285 64.2
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 4.8e-77 292.0 255 66.3
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-76 290.8 285 63.9
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 9.1e-76 287.7 298 62.4
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.5e-74 281.2 295 58.3
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 8.5e-74 281.2 295 58.3
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 4.2e-73 278.9 299 59.2
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 2.7e-72 276.2 284 62.7
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 4.0e-71 272.3 284 62.0
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.1e-68 262.7 299 55.9
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 5.5e-65 251.9 302 54.6
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.6e-64 250.4 295 55.3
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.6e-64 250.4 295 55.3
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.7e-64 249.6 298 56.4
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 8.0e-64 248.1 298 55.4
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.3e-63 246.5 295 54.6
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 3.0e-63 246.1 283 57.6
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 5.2e-63 245.4 293 54.9
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.0e-62 243.4 252 58.7
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 9.8e-62 241.1 296 52.0
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.2e-61 240.0 249 57.0
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 3.7e-61 239.2 292 54.1
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 2.4e-60 236.5 283 54.4
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 7.0e-60 235.0 287 53.3
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 1.0e-58 231.1 247 56.7
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 8.6e-58 228.0 289 52.9
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.5e-57 227.3 291 52.2
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 1.9e-57 226.9 295 51.5
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 1.9e-57 226.9 259 55.6
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 3.3e-57 226.1 300 51.0
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 3.3e-57 226.1 293 50.5
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 3.3e-57 226.1 298 51.7
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.2e-56 224.2 259 54.4
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 2.1e-56 223.4 261 54.4
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 2.8e-56 223.0 288 53.1
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.8e-56 223.0 302 50.7
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.8e-56 223.0 292 51.0
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 4.7e-56 222.2 282 52.1
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 1.2e-54 217.6 251 55.0
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 4.4e-54 215.7 277 51.6
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 5.7e-54 215.3 301 49.2
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 5.7e-54 215.3 298 49.7
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 7.5e-54 214.9 292 51.4
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 9.8e-54 214.5 303 49.5
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 1.3e-53 214.2 303 48.8
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 6.3e-53 211.8 286 49.3
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 8.3e-53 211.5 290 51.7
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.4e-52 210.7 303 49.8
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 9.2e-52 208.0 288 50.7
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 9.2e-52 208.0 288 50.7
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 9.2e-52 208.0 293 48.1
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.6e-51 207.2 281 50.9
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.7e-51 206.5 302 48.0
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.7e-51 206.5 311 47.3
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.7e-51 206.5 292 50.0
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.0e-50 204.5 291 48.5
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 1.7e-50 203.8 302 50.0
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.9e-50 203.0 243 50.2
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 5.0e-50 202.2 257 49.4
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 5.0e-50 202.2 294 48.0
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 8.6e-50 201.4 278 49.6
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.5e-49 200.7 290 45.5
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 2.5e-49 199.9 292 45.2
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 2.5e-49 199.9 318 46.2
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 3.3e-49 199.5 296 49.0
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 4.3e-49 199.1 249 51.4
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 5.6e-49 198.7 302 48.7
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 7.3e-49 198.4 284 48.6
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 9.5e-49 198.0 302 49.3
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.2e-48 197.6 257 52.1
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 4.7e-48 195.7 183 64.5
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 6.1e-48 195.3 261 49.0
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 6.1e-48 195.3 273 49.1
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.0e-47 194.5 290 46.2
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.4e-47 194.1 253 51.8
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 1.4e-47 194.1 258 48.8
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.8e-47 193.7 284 46.5
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.0e-47 192.6 305 44.3
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 5.2e-47 192.2 296 45.3
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 8.9e-47 191.4 252 47.6
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 3.4e-46 189.5 289 45.3
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 9.8e-46 188.0 275 47.3
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 9.8e-46 188.0 292 47.3
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.7e-45 187.2 291 46.7
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 2.2e-45 186.8 264 47.0
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 6.4e-45 185.3 248 50.8
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 8.3e-45 184.9 394 39.1
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.9e-44 183.7 230 51.7
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.2e-44 183.0 269 46.1
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 4.1e-44 182.6 301 42.9
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 7.0e-44 181.8 115 85.2
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 7.0e-44 181.8 312 43.9
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.0e-43 180.3 297 44.4
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.7e-43 179.9 289 47.4
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.7e-42 177.2 276 44.9
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 3.0e-42 176.4 245 44.5
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 3.0e-42 176.4 282 40.1
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 3.9e-42 176.0 257 45.5
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 9.5e-41 171.4 196 54.1
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 4.7e-40 169.1 272 47.8
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.4e-39 167.5 259 43.6
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 4.0e-39 166.0 94 90.4
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 5.2e-39 165.6 302 43.0
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 5.8e-38 162.2 266 48.9
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 5.8e-38 162.2 292 42.1
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 6.4e-37 158.7 292 41.8
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 8.3e-37 158.3 299 43.5
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.9e-33 147.1 103 77.7
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 7.3e-33 145.2 278 40.6
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 4.0e-31 139.4 177 52.0
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 8.9e-31 138.3 162 51.9
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 1.7e-29 134.0 229 43.7
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 2.2e-29 133.7 247 39.3
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.1e-28 131.3 237 37.1
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 3.2e-28 129.8 264 35.2
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 4.1e-28 129.4 247 38.1
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.6e-27 127.5 256 38.7
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 3.5e-27 126.3 306 33.7
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 3.5e-27 126.3 158 53.8
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 3.5e-27 126.3 294 32.0
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 5.1e-26 122.5 236 38.6
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 5.6e-25 119.0 221 38.9
A02p05200 Brassica napus HOM05D059425 ORTHO05D041380 2.0e-22 110.5 91 67.0
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.4e-20 104.4 174 41.4
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 6.2e-16 89.0 70 71.4
BraA10t43721Z Brassica rapa HOM05D005029 ORTHO05D006052 1.6e-11 74.3 42 95.2
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 1.9e-09 67.4 65 50.8
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 7.3e-09 65.5 107 35.5
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 3.1e-07 60.1 83 47.0
C07p26820 Brassica napus HOM05D005029 ORTHO05D006052 5.8e-06 55.8 37 70.3


User provided reference genes

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