Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37937 Brassica carinata HOM05D002087 ORTHO05D002101 1.6e-58 229.2 115 100.0
A01p21650 Brassica napus HOM05D002087 ORTHO05D002101 1.0e-31 140.2 98 76.5
BraA01t02072Z Brassica rapa HOM05D002087 ORTHO05D002101 1.0e-31 140.2 98 76.5
Thhalv10026659m.g Eutrema salsugineum HOM05D002087 ORTHO05D002101 3.8e-31 138.3 99 76.8
BcaNung00238 Brassica carinata HOM05D002087 ORTHO05D002101 1.2e-29 133.3 98 73.5
AL7G39360 Arabidopsis lyrata HOM05D002087 ORTHO05D002101 1.6e-29 132.9 104 72.1
BcaC09g50285 Brassica carinata HOM05D002087 ORTHO05D002101 6.0e-29 131.0 88 80.7
C01p26980 Brassica napus HOM05D002087 ORTHO05D002101 6.0e-29 131.0 88 80.7
AT4G15910 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 1.3e-28 129.8 104 71.2
Sp7g14360 Schrenkiella parvula HOM05D002087 ORTHO05D002101 1.3e-28 129.8 99 70.7
Carub.0007s2575 Capsella rubella HOM05D002087 ORTHO05D002101 1.1e-27 126.7 105 71.4
BolC1t02646H Brassica oleracea HOM05D002087 ORTHO05D002101 4.3e-27 124.8 93 76.3
BcaB04g18338 Brassica carinata HOM05D002087 ORTHO05D002101 7.4e-27 124.0 74 89.2
CARHR290450 Cardamine hirsuta HOM05D002087 ORTHO05D002101 9.0e-25 117.1 94 72.3
Aa31LG10G6230 Aethionema arabicum HOM05D002087 ORTHO05D002101 2.2e-23 112.5 108 60.2
THA.LOC104820291 Tarenaya hassleriana HOM05D002087 ORTHO05D002101 1.1e-22 110.2 106 60.4
A08p12020 Brassica napus HOM05D002087 ORTHO05D002101 2.6e-16 89.0 51 80.4
BraA08t33194Z Brassica rapa HOM05D002087 ORTHO05D002101 2.6e-16 89.0 51 80.4
BolC8t48322H Brassica oleracea HOM05D002087 ORTHO05D002101 4.5e-16 88.2 71 67.6
Potri.010G012100 Populus trichocarpa HOM05D002087 ORTHO05D002101 1.5e-11 73.2 98 51.0
COL.COLO4_13835 Corchorus olitorius HOM05D002087 ORTHO05D002101 3.3e-11 72.0 96 50.0
Manes.03G197100 Manihot esculenta HOM05D002087 ORTHO05D002101 4.3e-11 71.6 69 55.1
FAN07G0698 Fragaria x ananassa HOM05D002087 ORTHO05D002101 1.3e-10 70.1 66 57.6
FvH4_4g18470 Fragaria vesca HOM05D002087 ORTHO05D002101 2.2e-10 69.3 68 54.4
FAN12G0677 Fragaria x ananassa HOM05D002087 ORTHO05D002101 2.2e-10 69.3 68 54.4
Prupe.1G133500 Prunus persica HOM05D002087 ORTHO05D002101 2.2e-10 69.3 77 46.8
Hund18179 Selenicereus undatus HOM05D002087 ORTHO05D002101 2.2e-10 69.3 71 56.3
FAN12G1374 Fragaria x ananassa HOM05D002087 ORTHO05D002101 3.7e-10 68.6 68 54.4
RcHm_v2.0_Chr4g0422961 Rosa chinensis HOM05D002087 ORTHO05D002101 1.1e-09 67.0 68 52.9
TWI73G0336 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 1.1e-09 67.0 79 51.9
Duzib151G0120 Durio zibethinus HOM05D002087 ORTHO05D002101 1.4e-09 66.6 87 49.4
TWI09G0245 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 1.8e-09 66.2 79 50.6
Ciclev10006308m.g Citrus clementina HOM05D002087 ORTHO05D002101 3.1e-09 65.5 88 50.0
FAN17G2928 Fragaria x ananassa HOM05D002087 ORTHO05D002101 3.1e-09 65.5 67 53.7
Sabra10G0007800 Salix brachista HOM05D002087 ORTHO05D002101 4.1e-09 65.1 100 48.0
Thecc.04G287100 Theobroma cacao HOM05D002087 ORTHO05D002101 4.1e-09 65.1 89 47.2
Rhsim13G0009300 Rhododendron simsii HOM05D002087 ORTHO05D002101 5.3e-09 64.7 89 48.3
vmacro02442 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 5.3e-09 64.7 91 49.5
MBI19_g43555_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 6.9e-09 64.3 83 48.2
MBI19_g46347_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 6.9e-09 64.3 83 48.2
Gohir.A08G076700 Gossypium hirsutum HOM05D002087 ORTHO05D002101 9.1e-09 63.9 99 39.4
Gohir.A08G076800 Gossypium hirsutum HOM05D002087 ORTHO05D002101 9.1e-09 63.9 100 42.0
Gohir.D08G086400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 9.1e-09 63.9 90 41.1
Thecc.01G302000 Theobroma cacao HOM05D002087 ORTHO05D002101 9.1e-09 63.9 94 42.6
Dinv44363 Davidia involucrata HOM05D002087 ORTHO05D002101 1.2e-08 63.5 73 52.1
Gorai.004G090800 Gossypium raimondii HOM05D002087 ORTHO05D002101 1.5e-08 63.2 100 41.0
Eucgr.H01104 Eucalyptus grandis HOM05D002087 ORTHO05D002101 2.0e-08 62.8 92 46.7
Dinv29766 Davidia involucrata HOM05D002087 ORTHO05D002101 2.6e-08 62.4 91 49.5
Gohir.D08G086300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 2.6e-08 62.4 100 40.0
PGR031G1676 Punica granatum HOM05D002087 ORTHO05D002101 2.6e-08 62.4 97 43.3
Sopen09g030030 Solanum pennellii HOM05D002087 ORTHO05D002101 2.6e-08 62.4 97 42.3
Atru.chr6.1998 Acer truncatum HOM05D002087 ORTHO05D002101 3.4e-08 62.0 87 48.3
Hund05435 Selenicereus undatus HOM05D002087 ORTHO05D002101 3.4e-08 62.0 88 47.7
AUR62008681 Chenopodium quinoa HOM05D002087 ORTHO05D002101 4.5e-08 61.6 87 46.0
Gohir.D10G171400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 5.9e-08 61.2 73 46.6
Gorai.011G191500 Gossypium raimondii HOM05D002087 ORTHO05D002101 5.9e-08 61.2 73 46.6
HanXRQChr04g0114131 Helianthus annuus HOM05D002087 ORTHO05D002101 5.9e-08 61.2 66 43.9
PGSC0003DMG400031788 Solanum tuberosum HOM05D002087 ORTHO05D002101 5.9e-08 61.2 97 42.3
EL10Ac7g17530 Beta vulgaris HOM05D002087 ORTHO05D002101 7.7e-08 60.8 88 46.6
Duzib138G0723 Durio zibethinus HOM05D002087 ORTHO05D002101 7.7e-08 60.8 98 42.9
CiPaw.07G110400 Carya illinoinensis HOM05D002087 ORTHO05D002101 1.0e-07 60.5 68 45.6
Psat4g026680 Pisum sativum HOM05D002087 ORTHO05D002101 1.0e-07 60.5 83 48.2
QL06p009975 Quercus lobata HOM05D002087 ORTHO05D002101 1.0e-07 60.5 97 43.3
QL93p2007_0079 Quercus lobata HOM05D002087 ORTHO05D002101 1.0e-07 60.5 97 43.3
Gohir.A10G165300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.3e-07 60.1 73 45.2
Lj4g0021541 Lotus japonicus HOM05D002087 ORTHO05D002101 1.3e-07 60.1 64 48.4
MD00G1127700 Malus domestica HOM05D002087 ORTHO05D002101 1.3e-07 60.1 74 47.3
Nitab4.5_0007333g0010 Nicotiana tabacum HOM05D002087 ORTHO05D002101 1.3e-07 60.1 90 44.4
AUR62025562 Chenopodium quinoa HOM05D002087 ORTHO05D002101 1.7e-07 59.7 87 46.0
Gorai.004G090700 Gossypium raimondii HOM05D002087 ORTHO05D002101 1.7e-07 59.7 102 38.2
Nitab4.5_0000116g0500 Nicotiana tabacum HOM05D002087 ORTHO05D002101 1.7e-07 59.7 82 43.9
Sc05g0003740 Simmondsia chinensis HOM05D002087 ORTHO05D002101 1.7e-07 59.7 91 42.9
TAR365G0110 Trochodendron aralioides HOM05D002087 ORTHO05D002101 1.7e-07 59.7 71 46.5
Actinidia14332 Actinidia chinensis HOM05D002087 ORTHO05D002101 2.2e-07 59.3 62 50.0
CSS0043962 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 2.2e-07 59.3 64 48.4
Dinv19683 Davidia involucrata HOM05D002087 ORTHO05D002101 2.2e-07 59.3 66 50.0
Cpa.g.sc16.192 Carica papaya HOM05D002087 ORTHO05D002101 2.9e-07 58.9 87 47.1
Oeu046672.1 Olea europaea HOM05D002087 ORTHO05D002101 2.9e-07 58.9 91 45.1
ECA236G3158 Erigeron canadensis HOM05D002087 ORTHO05D002101 3.8e-07 58.5 80 42.5
Migut.D00143 Erythranthe guttata HOM05D002087 ORTHO05D002101 3.8e-07 58.5 90 41.1
Peaxi162Scf00001g00412 Petunia axillaris HOM05D002087 ORTHO05D002101 3.8e-07 58.5 79 44.3
Ah.08g213310 Amaranthus hybridus HOM05D002087 ORTHO05D002101 5.0e-07 58.2 87 40.2
Hma1.2p1_0078F.1_g040440 Hydrangea macrophylla HOM05D002087 ORTHO05D002101 5.0e-07 58.2 70 48.6
Hma1.2p1_0494F.1_g165250 Hydrangea macrophylla HOM05D002087 ORTHO05D002101 5.0e-07 58.2 90 45.6
Cfa005900 Carpinus fangiana HOM05D002087 ORTHO05D002101 6.5e-07 57.8 90 43.3
Duzib211G0093 Durio zibethinus HOM05D002087 ORTHO05D002101 6.5e-07 57.8 91 41.8
HanXRQChr15g0465601 Helianthus annuus HOM05D002087 ORTHO05D002101 6.5e-07 57.8 79 39.2
SHI15052 Sapria himalayana HOM05D002087 ORTHO05D002101 6.5e-07 57.8 80 47.5
TAR636G0371 Trochodendron aralioides HOM05D002087 ORTHO05D002101 6.5e-07 57.8 67 46.3
Actinidia25806 Actinidia chinensis HOM05D002087 ORTHO05D002101 8.5e-07 57.4 92 43.5
arahy.Tifrunner.gnm1.ann1.XU9PSJ Arachis hypogaea HOM05D002087 ORTHO05D002101 8.5e-07 57.4 45 62.2
MSTRG.18144 Avicennia marina HOM05D002087 ORTHO05D002101 8.5e-07 57.4 96 35.4
MSTRG.3707 Avicennia marina HOM05D002087 ORTHO05D002101 8.5e-07 57.4 96 35.4
CAN.G1280.4 Capsicum annuum HOM05D002087 ORTHO05D002101 8.5e-07 57.4 86 43.0
CAN.G1989.1 Capsicum annuum HOM05D002087 ORTHO05D002101 8.5e-07 57.4 63 50.8
CAN.G472.12 Capsicum annuum HOM05D002087 ORTHO05D002101 8.5e-07 57.4 90 42.2
Solyc09g075210.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 8.5e-07 57.4 96 40.6
TAR633G2750 Trochodendron aralioides HOM05D002087 ORTHO05D002101 8.5e-07 57.4 87 46.0
arahy.Tifrunner.gnm1.ann1.1PU3AF Arachis hypogaea HOM05D002087 ORTHO05D002101 1.1e-06 57.0 75 48.0
ClCG00G003750 Citrullus lanatus HOM05D002087 ORTHO05D002101 1.1e-06 57.0 65 43.1
ClCG10G011020 Citrullus lanatus HOM05D002087 ORTHO05D002101 1.1e-06 57.0 65 43.1
Eucgr.H01105 Eucalyptus grandis HOM05D002087 ORTHO05D002101 1.1e-06 57.0 76 44.7
Eucgr.K03492 Eucalyptus grandis HOM05D002087 ORTHO05D002101 1.1e-06 57.0 96 39.6
Oeu011462.1 Olea europaea HOM05D002087 ORTHO05D002101 1.1e-06 57.0 91 44.0
Sed0008157 Sechium edule HOM05D002087 ORTHO05D002101 1.1e-06 57.0 89 44.9
Sed0009339 Sechium edule HOM05D002087 ORTHO05D002101 1.1e-06 57.0 76 40.8
CAN.G1280.5 Capsicum annuum HOM05D002087 ORTHO05D002101 1.4e-06 56.6 64 48.4
CAN.G1989.10 Capsicum annuum HOM05D002087 ORTHO05D002101 1.4e-06 56.6 64 48.4
Haze_04952 Corylus avellana HOM05D002087 ORTHO05D002101 1.4e-06 56.6 90 42.2
Eucgr.H01103 Eucalyptus grandis HOM05D002087 ORTHO05D002101 1.4e-06 56.6 92 44.6
Peaxi162Scf00399g00518 Petunia axillaris HOM05D002087 ORTHO05D002101 1.4e-06 56.6 69 43.5
Rhsim01G0286200 Rhododendron simsii HOM05D002087 ORTHO05D002101 1.4e-06 56.6 91 46.2
Sp1g01800 Schrenkiella parvula HOM05D002087 ORTHO05D002101 1.4e-06 56.6 96 38.5
unitig_0.g670 Utricularia gibba HOM05D002087 ORTHO05D002101 1.4e-06 56.6 75 40.0
CSS0024122 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 2.5e-06 55.8 91 46.2
CSS0040472 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 2.5e-06 55.8 91 46.2
CARHR250570 Cardamine hirsuta HOM05D002087 ORTHO05D002101 2.5e-06 55.8 90 43.3
Gohir.D08G138900 Gossypium hirsutum HOM05D002087 ORTHO05D002101 2.5e-06 55.8 88 36.4
Gorai.004G142600 Gossypium raimondii HOM05D002087 ORTHO05D002101 2.5e-06 55.8 88 36.4
Nn4g25778 Nelumbo nucifera HOM05D002087 ORTHO05D002101 2.5e-06 55.8 87 44.8
TAR362G1222 Trochodendron aralioides HOM05D002087 ORTHO05D002101 2.5e-06 55.8 68 48.5
arahy.Tifrunner.gnm1.ann1.03QWZ4 Arachis hypogaea HOM05D002087 ORTHO05D002101 3.2e-06 55.5 87 36.8
BcaC03g16117 Brassica carinata HOM05D002087 ORTHO05D002101 3.2e-06 55.5 95 40.0
Duzib133G1126 Durio zibethinus HOM05D002087 ORTHO05D002101 3.2e-06 55.5 88 40.9
GSVIVG01028033001 Vitis vinifera HOM05D002087 ORTHO05D002101 3.2e-06 55.5 66 47.0
Aa31LG5G2020 Aethionema arabicum HOM05D002087 ORTHO05D002101 4.2e-06 55.1 88 38.6
Ah.15g093120 Amaranthus hybridus HOM05D002087 ORTHO05D002101 4.2e-06 55.1 87 43.7
BcaB01g02052 Brassica carinata HOM05D002087 ORTHO05D002101 4.2e-06 55.1 88 39.8
A02p24640 Brassica napus HOM05D002087 ORTHO05D002101 4.2e-06 55.1 95 40.0
C02p38880 Brassica napus HOM05D002087 ORTHO05D002101 4.2e-06 55.1 95 40.0
SalBow3G0131 Salvia bowleyana HOM05D002087 ORTHO05D002101 4.2e-06 55.1 94 40.4
BcaNung04047 Brassica carinata HOM05D002087 ORTHO05D002101 5.5e-06 54.7 93 38.7
A03p31110 Brassica napus HOM05D002087 ORTHO05D002101 5.5e-06 54.7 87 43.7
A09p01850 Brassica napus HOM05D002087 ORTHO05D002101 5.5e-06 54.7 93 38.7
C09p01890 Brassica napus HOM05D002087 ORTHO05D002101 5.5e-06 54.7 93 38.7
BolC9t53124H Brassica oleracea HOM05D002087 ORTHO05D002101 5.5e-06 54.7 93 38.7
BraA03t12288Z Brassica rapa HOM05D002087 ORTHO05D002101 5.5e-06 54.7 87 43.7
Glyma.09G043400 Glycine max HOM05D002087 ORTHO05D002101 5.5e-06 54.7 67 46.3
QL12p028285 Quercus lobata HOM05D002087 ORTHO05D002101 5.5e-06 54.7 68 47.1
Sopen08g023330 Solanum pennellii HOM05D002087 ORTHO05D002101 5.5e-06 54.7 69 42.0
Actinidia26754 Actinidia chinensis HOM05D002087 ORTHO05D002101 7.2e-06 54.3 37 62.2
Cpa.g.sc9.251 Carica papaya HOM05D002087 ORTHO05D002101 7.2e-06 54.3 92 39.1
Glyma.15G149600 Glycine max HOM05D002087 ORTHO05D002101 7.2e-06 54.3 83 43.4
Gohir.A08G117900 Gossypium hirsutum HOM05D002087 ORTHO05D002101 7.2e-06 54.3 88 36.4
Oeu024406.1 Olea europaea HOM05D002087 ORTHO05D002101 7.2e-06 54.3 64 45.3
Solyc08g074720.2 Solanum lycopersicum HOM05D002087 ORTHO05D002101 7.2e-06 54.3 73 39.7
unitig_0.g671 Utricularia gibba HOM05D002087 ORTHO05D002101 7.2e-06 54.3 88 40.9
BcaC01g06763 Brassica carinata HOM05D002087 ORTHO05D002101 9.4e-06 53.9 87 43.7
BcaC05g24591 Brassica carinata HOM05D002087 ORTHO05D002101 9.4e-06 53.9 90 42.2
C05p01450 Brassica napus HOM05D002087 ORTHO05D002101 9.4e-06 53.9 90 42.2
BolC3t16079H Brassica oleracea HOM05D002087 ORTHO05D002101 9.4e-06 53.9 87 43.7
BolC5t28927H Brassica oleracea HOM05D002087 ORTHO05D002101 9.4e-06 53.9 90 42.2
CDE02G3647 Ceratophyllum demersum HOM05D002087 ORTHO05D002101 9.4e-06 53.9 108 35.2
Lsat_1_v5_gn_8_164161 Lactuca sativa HOM05D002087 ORTHO05D002101 9.4e-06 53.9 67 40.3
SalBow1G8051 Salvia bowleyana HOM05D002087 ORTHO05D002101 9.4e-06 53.9 65 41.5
PGSC0003DMG400017936 Solanum tuberosum HOM05D002087 ORTHO05D002101 9.4e-06 53.9 77 44.2


User provided reference genes

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