Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 2840.4 1473 100.0
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 2809.2 1492 98.4
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 2736.4 1455 96.9
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 2729.1 1455 96.6
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 2639.0 1480 93.0
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 2407.5 1485 85.5
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 2405.9 1483 85.9
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 2395.9 1482 84.9
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1571.2 1449 58.6
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1567.0 1463 59.6
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1562.0 1458 58.1
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1554.3 1460 58.4
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1552.3 1433 59.5
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1552.0 1454 58.7
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1547.3 1468 57.6
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1540.0 1494 57.0
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1538.1 1459 58.4
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1525.0 1430 58.7
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1520.8 1450 57.4
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1510.4 1458 57.7
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1504.6 1458 57.8
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1501.1 1471 56.3
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1499.6 1454 57.4
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1496.5 1463 56.7
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1494.2 1437 56.3
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1494.2 1450 57.3
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1488.0 1429 56.9
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1484.2 1382 58.3
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1477.2 1437 56.3
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1466.1 1355 59.3
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1460.3 1453 54.6
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1425.2 1529 53.0
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1395.2 1457 54.0
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1381.3 1470 52.7
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1374.0 1463 52.0
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1369.4 1462 51.8
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1364.4 1455 52.2
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1364.4 1457 52.0
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1363.6 1476 51.5
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1358.2 1467 53.4
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1355.5 1446 51.7
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1352.0 1446 51.7
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1351.3 1431 52.6
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1341.6 1465 52.1
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1341.6 1484 51.1
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1323.1 1459 51.7
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1291.6 1458 49.9
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1278.5 1478 49.6
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1253.8 1203 56.7
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1232.6 1459 49.7
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1216.4 1501 47.7
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1205.3 1559 46.2
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1201.4 1339 51.2
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1185.6 1402 48.4
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1114.4 1336 49.3
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 7.2e-292 1008.1 1280 45.6
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 1.5e-278 963.8 1217 47.2
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 5.7e-265 918.7 1242 43.5
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 6.3e-264 915.2 760 62.9
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 2.4e-263 913.3 1048 49.1
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 1.0e-258 897.9 969 52.9
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 9.1e-255 884.8 1510 38.4
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 5.0e-253 879.0 1464 37.8
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 1.0e-250 871.3 968 51.8
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 7.5e-241 838.6 918 52.7
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.8e-203 713.8 405 90.1
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 4.3e-196 689.9 556 66.0
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 3.2e-191 673.7 675 52.4
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 1.8e-181 641.3 1203 34.7
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 3.6e-174 617.1 543 58.9
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 7.0e-154 549.7 642 48.8
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 1.4e-146 525.4 970 34.5
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.8e-142 511.1 323 79.9
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.8e-138 498.4 729 41.3
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 5.6e-95 354.0 692 36.6
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 4.3e-87 327.8 194 88.1
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 3.2e-66 258.5 208 73.1
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.1e-65 255.8 202 63.9
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 2.5e-63 248.8 253 54.9
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.4e-63 247.3 159 81.8
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 7.4e-47 194.1 122 75.4
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.7e-43 183.0 238 45.4
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-43 182.2 234 41.9
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 2.0e-39 169.5 149 61.1
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 2.8e-38 165.6 204 45.6
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 5.9e-36 157.9 121 65.3
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 2.7e-28 132.5 131 67.2
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 1.3e-27 130.2 203 38.4
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 1.6e-25 123.2 91 65.9
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 3.3e-18 99.0 111 39.6
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 4.3e-18 98.6 111 39.6
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 4.3e-18 98.6 111 39.6
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 1.4e-16 93.6 213 32.9
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 2.2e-14 86.3 79 59.5
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 3.5e-12 79.0 121 42.1
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 3.5e-12 79.0 51 76.5
AL3G45770 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 1.9e-10 73.2 67 76.1
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 5.6e-10 71.6 119 43.7
C03p18330 Brassica napus HOM05D007170 ORTHO05D041508 9.5e-10 70.9 35 94.3
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 3.6e-09 68.9 405 22.2
Lj7C724G9 Lonicera japonica HOM05D003337 ORTHO05D003808 8.0e-09 67.8 386 22.0
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 2.3e-08 66.2 402 21.1
Gohir.A05G055800 Gossypium hirsutum HOM05D003337 ORTHO05D003808 3.1e-08 65.9 402 20.9
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 3.1e-08 65.9 402 21.1
MELO3C003713.2 Cucumis melo HOM05D003337 ORTHO05D003808 6.8e-08 64.7 385 23.4
COL.COLO4_18879 Corchorus olitorius HOM05D003337 ORTHO05D003808 8.9e-08 64.3 402 22.1
GSVIVG01035878001 Vitis vinifera HOM05D003337 ORTHO05D003808 1.2e-07 63.9 403 22.1
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.2e-07 63.9 40 75.0
QL02p021300 Quercus lobata HOM05D003337 ORTHO05D003808 1.5e-07 63.5 404 22.5
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 3.4e-07 62.4 179 26.3
Lalb_Chr08g0244191 Lupinus albus HOM05D003337 ORTHO05D003808 3.4e-07 62.4 366 24.0
Lalb_Chr23g0268451 Lupinus albus HOM05D003337 ORTHO05D003808 4.4e-07 62.0 403 22.1
ClCG05G016760 Citrullus lanatus HOM05D003337 ORTHO05D003808 5.8e-07 61.6 386 23.8
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 7.5e-07 61.2 97 36.1
Mapoly0008s0250 Marchantia polymorpha HOM05D003337 ORTHO05D003808 7.5e-07 61.2 368 21.2
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 1.7e-06 60.1 118 32.2
Lalb_Chr11g0063671 Lupinus albus HOM05D003337 ORTHO05D003808 2.9e-06 59.3 403 21.1
SEGI_23839 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 2.9e-06 59.3 401 18.5
SEGI_27956 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 2.9e-06 59.3 401 18.5
SMO144G0040 Selaginella moellendorffii HOM05D003337 ORTHO05D003808 3.7e-06 58.9 361 20.5
BolC3t14231H Brassica oleracea HOM05D007170 ORTHO05D041508 6.4e-06 58.2 43 72.1
CsaV3_3G046270 Cucumis sativus L. HOM05D003337 ORTHO05D003808 6.4e-06 58.2 385 22.6
Dinv18205 Davidia involucrata HOM05D003337 ORTHO05D003808 6.4e-06 58.2 398 22.6
arahy.Tifrunner.gnm1.ann1.C340QI Arachis hypogaea HOM05D003337 ORTHO05D003808 8.3e-06 57.8 410 21.7
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 8.3e-06 57.8 45 62.2


User provided reference genes

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