Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 7.6e-78 294.3 163 100.0
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 7.6e-78 294.3 163 100.0
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 2.7e-75 285.8 143 98.6
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 7.9e-75 284.3 143 97.9
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 3.4e-70 268.9 143 93.0
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 4.8e-56 221.9 151 76.2
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 2.4e-55 219.5 142 76.1
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 7.7e-54 214.5 136 78.7
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 1.7e-53 213.4 144 77.8
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 8.5e-53 211.1 142 77.5
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 1.5e-52 210.3 140 74.3
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 1.9e-52 209.9 140 77.9
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 5.5e-52 208.4 142 76.8
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 1.6e-51 206.8 142 74.6
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 1.6e-51 206.8 142 74.6
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 6.1e-51 204.9 140 75.7
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 1.8e-50 203.4 142 75.4
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 2.3e-50 203.0 144 75.0
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 1.7e-48 196.8 148 70.3
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 2.2e-48 196.4 129 77.5
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 1.2e-43 180.6 144 66.7
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 6.3e-40 168.3 133 63.2
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 1.2e-25 120.9 141 48.9
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 4.9e-24 115.5 154 45.5
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 1.4e-23 114.0 146 45.9
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 1.8e-23 113.6 114 53.5
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 1.8e-23 113.6 136 46.3
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 5.4e-23 112.1 134 47.0
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 1.6e-22 110.5 110 50.0
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 2.7e-22 109.8 143 44.1
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 2.7e-22 109.8 139 43.2
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 2.7e-22 109.8 139 43.2
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 4.6e-22 109.0 104 53.8
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 5.9e-22 108.6 119 50.4
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 1.0e-21 107.8 138 42.0
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 1.3e-21 107.5 136 47.8
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 1.3e-21 107.5 136 47.8
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 5.0e-21 105.5 144 45.8
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 1.5e-20 104.0 141 40.4
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 1.9e-20 103.6 139 44.6
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 2.5e-20 103.2 138 40.6
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 3.3e-20 102.8 112 46.4
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 4.3e-20 102.4 96 50.0
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 4.3e-20 102.4 117 46.2
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 5.6e-20 102.1 118 44.9
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 7.3e-20 101.7 94 53.2
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 9.5e-20 101.3 112 49.1
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 1.2e-19 100.9 114 45.6
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 1.2e-19 100.9 114 45.6
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.6e-19 100.5 108 47.2
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 1.6e-19 100.5 101 50.5
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.1e-19 100.1 126 44.4
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.1e-19 100.1 108 49.1
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 2.1e-19 100.1 101 53.5
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 4.7e-19 99.0 112 48.2
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 6.2e-19 98.6 125 43.2
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 6.2e-19 98.6 138 42.0
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 8.0e-19 98.2 113 46.9
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 8.0e-19 98.2 110 44.5
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 1.0e-18 97.8 103 48.5
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 1.4e-18 97.4 102 47.1
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 1.4e-18 97.4 108 43.5
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 2.3e-18 96.7 103 46.6
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 4.0e-18 95.9 130 37.7
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 4.0e-18 95.9 91 49.5
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 4.0e-18 95.9 116 41.4
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 5.2e-18 95.5 106 45.3
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 6.8e-18 95.1 122 42.6
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 8.9e-18 94.7 101 46.5
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 8.9e-18 94.7 97 50.5
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 1.2e-17 94.4 111 45.9
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 2.0e-17 93.6 97 51.5
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 2.6e-17 93.2 135 39.3
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 4.4e-17 92.4 97 51.5
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 9.8e-17 91.3 114 43.9
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 2.2e-16 90.1 77 53.2
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 2.9e-16 89.7 89 50.6
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 3.7e-16 89.4 107 43.9
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 6.4e-16 88.6 89 48.3
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 8.3e-16 88.2 100 48.0
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 8.3e-16 88.2 105 43.8
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 1.1e-15 87.8 140 40.7
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 2.4e-15 86.7 99 45.5
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 3.2e-15 86.3 146 37.0
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 1.6e-14 84.0 114 44.7
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 1.0e-13 81.3 94 38.3
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 1.7e-13 80.5 127 37.0
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 3.0e-13 79.7 118 40.7
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 3.0e-13 79.7 127 37.0
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 3.0e-13 79.7 97 44.3
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 5.0e-13 79.0 103 38.8
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 5.0e-13 79.0 99 42.4
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.5e-12 77.4 116 39.7
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 4.3e-12 75.9 86 48.8
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 3.6e-11 72.8 130 34.6
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 4.9e-08 62.4 103 31.1
Os01g0607100 Oryza sativa ssp. japonica HOM05D032292 ORTHO05D009025 7.1e-07 58.5 129 30.2
Zm00001eb408970 Zea mays HOM05D032292 ORTHO05D009025 7.1e-07 58.5 80 38.8
SEGI_36919 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 6.0e-06 55.5 108 36.1
FvH4_3g08061 Fragaria vesca HOM05D007411 ORTHO05D009025 7.8e-06 55.1 55 49.1


User provided reference genes

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