Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37849 Brassica carinata HOM05D003541 ORTHO05D004095 4.8e-114 414.5 202 100.0
BolC8t48238H Brassica oleracea HOM05D003541 ORTHO05D004095 9.8e-83 310.5 178 87.6
BcaC07g41329 Brassica carinata HOM05D003541 ORTHO05D004095 5.2e-68 261.5 228 65.8
A09p59950 Brassica napus HOM05D003541 ORTHO05D004095 1.2e-67 260.4 228 65.4
BraA09t41366Z Brassica rapa HOM05D003541 ORTHO05D004095 1.2e-67 260.4 228 65.4
C08p43390 Brassica napus HOM05D003541 ORTHO05D004095 1.5e-67 260.0 228 65.4
BolC8t51888H Brassica oleracea HOM05D003541 ORTHO05D004095 1.5e-67 260.0 228 65.4
A08p11440 Brassica napus HOM05D003541 ORTHO05D004095 1.3e-66 256.9 227 64.3
Sp1g16400 Schrenkiella parvula HOM05D003541 ORTHO05D004095 1.6e-64 250.0 228 62.3
BcaB03g12981 Brassica carinata HOM05D003541 ORTHO05D004095 1.9e-62 243.0 228 61.0
Thhalv10006963m.g Eutrema salsugineum HOM05D003541 ORTHO05D004095 2.3e-60 236.1 228 60.5
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 1.2e-59 233.8 221 60.6
BraA08t34973Z Brassica rapa HOM05D003541 ORTHO05D004095 1.2e-59 233.8 228 58.8
BcaNung05446 Brassica carinata HOM05D003541 ORTHO05D004095 2.0e-59 233.0 228 58.8
C08p18630 Brassica napus HOM05D003541 ORTHO05D004095 2.0e-59 233.0 228 58.8
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 2.0e-59 233.0 228 58.8
A08p30400 Brassica napus HOM05D003541 ORTHO05D004095 2.6e-59 232.6 228 58.8
AL1G30890 Arabidopsis lyrata HOM05D003541 ORTHO05D004095 1.3e-58 230.3 228 59.2
AT1G18460 Arabidopsis thaliana HOM05D003541 ORTHO05D004095 2.9e-58 229.2 228 58.8
Carub.0001s1809 Capsella rubella HOM05D003541 ORTHO05D004095 3.7e-58 228.8 227 59.5
CARHR019070 Cardamine hirsuta HOM05D003541 ORTHO05D004095 2.7e-56 222.6 228 57.0
A07p39770 Brassica napus HOM05D003541 ORTHO05D004095 3.3e-54 215.7 229 56.8
BraA07t31524Z Brassica rapa HOM05D003541 ORTHO05D004095 9.5e-54 214.2 229 56.3
Haze_18628 Corylus avellana HOM05D003541 ORTHO05D004095 1.2e-53 213.8 227 54.6
MD06G1212200 Malus domestica HOM05D003541 ORTHO05D004095 2.1e-53 213.0 227 54.6
CSS0035183 Camellia sinensis var. sinensis HOM05D003541 ORTHO05D004095 2.8e-53 212.6 227 54.6
Aa31LG7G3130 Aethionema arabicum HOM05D003541 ORTHO05D004095 3.6e-53 212.2 230 55.2
Prupe.5G218200 Prunus persica HOM05D003541 ORTHO05D004095 6.2e-53 211.5 227 54.2
C06p48040 Brassica napus HOM05D003541 ORTHO05D004095 8.1e-53 211.1 229 55.9
BolC6t39839H Brassica oleracea HOM05D003541 ORTHO05D004095 8.1e-53 211.1 229 55.9
BcaC08g45614 Brassica carinata HOM05D003541 ORTHO05D004095 2.3e-52 209.5 227 55.9
A07p29580 Brassica napus HOM05D003541 ORTHO05D004095 2.3e-52 209.5 229 55.0
C06p33740 Brassica napus HOM05D003541 ORTHO05D004095 2.3e-52 209.5 229 55.0
BolC6t38489H Brassica oleracea HOM05D003541 ORTHO05D004095 2.3e-52 209.5 229 55.0
BraA07t30599Z Brassica rapa HOM05D003541 ORTHO05D004095 2.3e-52 209.5 229 55.0
Thhalv10018209m.g Eutrema salsugineum HOM05D003541 ORTHO05D004095 2.3e-52 209.5 229 55.0
QL10p023576 Quercus lobata HOM05D003541 ORTHO05D004095 3.1e-52 209.1 227 53.3
Sp5g29120 Schrenkiella parvula HOM05D003541 ORTHO05D004095 5.2e-52 208.4 229 54.6
CANSAT80G0782 Cannabis sativa HOM05D003541 ORTHO05D004095 6.8e-52 208.0 228 54.4
Ciclev10019107m.g Citrus clementina HOM05D003541 ORTHO05D004095 6.8e-52 208.0 227 54.2
BcaB03g15736 Brassica carinata HOM05D003541 ORTHO05D004095 8.9e-52 207.6 230 54.3
CARHR067030 Cardamine hirsuta HOM05D003541 ORTHO05D004095 8.9e-52 207.6 229 54.1
Rhsim12G0144300 Rhododendron simsii HOM05D003541 ORTHO05D004095 1.2e-51 207.2 228 53.1
RcHm_v2.0_Chr7g0184731 Rosa chinensis HOM05D003541 ORTHO05D004095 1.2e-51 207.2 227 54.6
Carub.0002s2069 Capsella rubella HOM05D003541 ORTHO05D004095 3.4e-51 205.7 229 54.6
vmacro22487 Vaccinium macrocarpon HOM05D003541 ORTHO05D004095 4.4e-51 205.3 227 54.2
Lj4g0015559 Lotus japonicus HOM05D003541 ORTHO05D004095 5.8e-51 204.9 228 51.3
Aa31LG4G4210 Aethionema arabicum HOM05D003541 ORTHO05D004095 7.6e-51 204.5 229 54.1
FAN04G2140 Fragaria x ananassa HOM05D003541 ORTHO05D004095 1.7e-50 203.4 227 52.9
THA.LOC104812131 Tarenaya hassleriana HOM05D003541 ORTHO05D004095 1.7e-50 203.4 229 53.7
FvH4_5g12600 Fragaria vesca HOM05D003541 ORTHO05D004095 2.2e-50 203.0 227 52.9
FAN18G0309 Fragaria x ananassa HOM05D003541 ORTHO05D004095 2.2e-50 203.0 227 52.9
CiPaw.16G084500 Carya illinoinensis HOM05D003541 ORTHO05D004095 2.9e-50 202.6 232 52.6
FAN08G0854 Fragaria x ananassa HOM05D003541 ORTHO05D004095 2.9e-50 202.6 227 52.9
MD14G1222700 Malus domestica HOM05D003541 ORTHO05D004095 2.9e-50 202.6 227 52.4
Oeu024322.1 Olea europaea HOM05D003541 ORTHO05D004095 4.9e-50 201.8 227 53.3
AL2G33750 Arabidopsis lyrata HOM05D003541 ORTHO05D004095 6.4e-50 201.4 229 52.8
Dinv07364 Davidia involucrata HOM05D003541 ORTHO05D004095 6.4e-50 201.4 227 52.0
FAN18G3376 Fragaria x ananassa HOM05D003541 ORTHO05D004095 6.4e-50 201.4 227 52.4
Atru.chr9.784 Acer truncatum HOM05D003541 ORTHO05D004095 8.3e-50 201.1 227 52.0
AT1G73920 Arabidopsis thaliana HOM05D003541 ORTHO05D004095 1.4e-49 200.3 229 52.4
Potri.012G060600 Populus trichocarpa HOM05D003541 ORTHO05D004095 1.9e-49 199.9 227 51.5
Phvul.004G160400 Phaseolus vulgaris HOM05D003541 ORTHO05D004095 3.2e-49 199.1 227 52.0
COL.COLO4_16239 Corchorus olitorius HOM05D003541 ORTHO05D004095 5.4e-49 198.4 227 50.2
MSTRG.11321 Avicennia marina HOM05D003541 ORTHO05D004095 9.2e-49 197.6 227 52.4
Cc04_g07430 Coffea canephora HOM05D003541 ORTHO05D004095 1.2e-48 197.2 227 52.0
Eucgr.K02663 Eucalyptus grandis HOM05D003541 ORTHO05D004095 1.2e-48 197.2 227 51.1
Ah.11g047040 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.6e-48 196.8 228 50.4
Hma1.2p1_0340F.1_g129780 Hydrangea macrophylla HOM05D003541 ORTHO05D004095 2.1e-48 196.4 227 51.5
TAR371G0923 Trochodendron aralioides HOM05D003541 ORTHO05D004095 2.7e-48 196.1 227 50.7
TWI15G0244 Tripterygium wilfordii HOM05D003541 ORTHO05D004095 3.5e-48 195.7 227 49.8
VMungo0464G0349 Vigna mungo HOM05D003541 ORTHO05D004095 3.5e-48 195.7 227 50.7
Hma1.2p1_3191F.1_g333810 Hydrangea macrophylla HOM05D003541 ORTHO05D004095 4.6e-48 195.3 227 51.1
PGR083G2725 Punica granatum HOM05D003541 ORTHO05D004095 6.0e-48 194.9 232 51.7
Glyma.09G187400 Glycine max HOM05D003541 ORTHO05D004095 1.3e-47 193.7 227 50.7
TWI81G0124 Tripterygium wilfordii HOM05D003541 ORTHO05D004095 1.3e-47 193.7 227 51.1
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.7e-47 193.4 212 54.2
EL10Ac5g11259 Beta vulgaris HOM05D003541 ORTHO05D004095 1.7e-47 193.4 215 52.1
Thecc.03G029700 Theobroma cacao HOM05D003541 ORTHO05D004095 1.7e-47 193.4 227 50.2
Hund10017 Selenicereus undatus HOM05D003541 ORTHO05D004095 2.3e-47 193.0 223 51.6
Eucgr.B00703 Eucalyptus grandis HOM05D003541 ORTHO05D004095 3.0e-47 192.6 227 52.0
Lj5C146G11 Lonicera japonica HOM05D003541 ORTHO05D004095 3.9e-47 192.2 227 51.5
Glyma.07G089400 Glycine max HOM05D003541 ORTHO05D004095 5.1e-47 191.8 227 49.8
Actinidia35078 Actinidia chinensis HOM05D003541 ORTHO05D004095 6.6e-47 191.4 227 50.2
Aqoxy3G03927 Aquilegia oxysepala HOM05D003541 ORTHO05D004095 8.6e-47 191.0 227 50.2
Ca_17344_v3 Cicer arietinum L. HOM05D003541 ORTHO05D004095 1.1e-46 190.7 227 48.5
MBI09_g04371_MAGBIO Magnolia biondii HOM05D003541 ORTHO05D004095 1.1e-46 190.7 227 50.2
Lalb_Chr14g0371311 Lupinus albus HOM05D003541 ORTHO05D004095 1.5e-46 190.3 223 51.1
Medtr8g103850 Medicago truncatula HOM05D003541 ORTHO05D004095 1.5e-46 190.3 227 48.0
SalBow5G5009 Salvia bowleyana HOM05D003541 ORTHO05D004095 1.5e-46 190.3 227 51.1
PSO063G0435 Papaver somniferum HOM05D003541 ORTHO05D004095 1.9e-46 189.9 227 50.7
PSO782G5001 Papaver somniferum HOM05D003541 ORTHO05D004095 1.9e-46 189.9 227 50.7
Sc04g0003690 Simmondsia chinensis HOM05D003541 ORTHO05D004095 1.9e-46 189.9 215 52.1
Cpa.g.sc13.27 Carica papaya HOM05D003541 ORTHO05D004095 2.5e-46 189.5 186 58.6
Nitab4.5_0000410g0010 Nicotiana tabacum HOM05D003541 ORTHO05D004095 2.5e-46 189.5 227 50.7
Lj2g0005362 Lotus japonicus HOM05D003541 ORTHO05D004095 4.3e-46 188.7 227 50.2
Psat7g012440 Pisum sativum HOM05D003541 ORTHO05D004095 4.3e-46 188.7 227 48.5
AUR62036965 Chenopodium quinoa HOM05D003541 ORTHO05D004095 5.6e-46 188.3 215 51.2
Glyma.05G232700 Glycine max HOM05D003541 ORTHO05D004095 5.6e-46 188.3 227 48.9
AUR62032198 Chenopodium quinoa HOM05D003541 ORTHO05D004095 7.3e-46 188.0 215 51.2
Manes.01G020100 Manihot esculenta HOM05D003541 ORTHO05D004095 9.6e-46 187.6 227 49.8
Nitab4.5_0001599g0130 Nicotiana tabacum HOM05D003541 ORTHO05D004095 9.6e-46 187.6 227 50.2
TPR.G21707 Trifolium pratense HOM05D003541 ORTHO05D004095 9.6e-46 187.6 227 48.0
PGSC0003DMG400004445 Solanum tuberosum HOM05D003541 ORTHO05D004095 1.6e-45 186.8 223 49.3
Lsat_1_v5_gn_4_115841 Lactuca sativa HOM05D003541 ORTHO05D004095 2.1e-45 186.4 227 50.2
Lalb_Chr22g0352971 Lupinus albus HOM05D003541 ORTHO05D004095 2.8e-45 186.0 214 52.3
Migut.I00385 Erythranthe guttata HOM05D003541 ORTHO05D004095 4.7e-45 185.3 228 50.4
Hund02522 Selenicereus undatus HOM05D003541 ORTHO05D004095 4.7e-45 185.3 223 48.9
arahy.Tifrunner.gnm1.ann1.Q237M7 Arachis hypogaea HOM05D003541 ORTHO05D004095 6.2e-45 184.9 226 47.3
PGSC0003DMG400005709 Solanum tuberosum HOM05D003541 ORTHO05D004095 6.2e-45 184.9 227 49.3
Peaxi162Scf00015g00839 Petunia axillaris HOM05D003541 ORTHO05D004095 1.1e-44 184.1 227 50.2
Solyc03g119720.4 Solanum lycopersicum HOM05D003541 ORTHO05D004095 2.4e-44 183.0 227 48.5
DCAR_023188 Daucus carota HOM05D003541 ORTHO05D004095 3.1e-44 182.6 232 49.6
Sopen12g017870 Solanum pennellii HOM05D003541 ORTHO05D004095 4.0e-44 182.2 223 49.3
GSVIVG01008249001 Vitis vinifera HOM05D003541 ORTHO05D004095 4.0e-44 182.2 219 50.7
CAN.G438.122 Capsicum annuum HOM05D003541 ORTHO05D004095 5.2e-44 181.8 229 48.9
Sopen03g038560 Solanum pennellii HOM05D003541 ORTHO05D004095 5.2e-44 181.8 227 48.5
HanXRQChr09g0269901 Helianthus annuus HOM05D003541 ORTHO05D004095 6.8e-44 181.4 227 48.9
Manes.05G138900 Manihot esculenta HOM05D003541 ORTHO05D004095 6.8e-44 181.4 227 48.5
Lalb_Chr05g0222641 Lupinus albus HOM05D003541 ORTHO05D004095 8.9e-44 181.0 227 47.1
Psat1g039360 Pisum sativum HOM05D003541 ORTHO05D004095 8.9e-44 181.0 216 50.5
Solyc12g038160.2 Solanum lycopersicum HOM05D003541 ORTHO05D004095 2.0e-43 179.9 223 48.9
SGA_v2.0_scaffold19G08810 Striga asiatica HOM05D003541 ORTHO05D004095 2.0e-43 179.9 215 53.5
Duzib068G0226 Durio zibethinus HOM05D003541 ORTHO05D004095 2.6e-43 179.5 227 47.1
TPR.G31445 Trifolium pratense HOM05D003541 ORTHO05D004095 2.6e-43 179.5 225 48.0
arahy.Tifrunner.gnm1.ann1.5B91PZ Arachis hypogaea HOM05D003541 ORTHO05D004095 4.4e-43 178.7 228 48.7
arahy.Tifrunner.gnm1.ann1.SXG9J3 Arachis hypogaea HOM05D003541 ORTHO05D004095 4.4e-43 178.7 228 48.7
DCAR_011345 Daucus carota HOM05D003541 ORTHO05D004095 4.4e-43 178.7 225 50.7
Medtr6g085070 Medicago truncatula HOM05D003541 ORTHO05D004095 4.4e-43 178.7 230 47.8
Zm00001eb132660 Zea mays HOM05D003541 ORTHO05D004095 4.4e-43 178.7 227 45.8
Lsat_1_v5_gn_5_25181 Lactuca sativa HOM05D003541 ORTHO05D004095 5.8e-43 178.3 225 50.2
HanXRQChr05g0152881 Helianthus annuus HOM05D003541 ORTHO05D004095 7.6e-43 177.9 227 50.7
Nn3g17767 Nelumbo nucifera HOM05D003541 ORTHO05D004095 7.6e-43 177.9 229 48.5
Os01g0521400 Oryza sativa ssp. japonica HOM05D003541 ORTHO05D004095 9.9e-43 177.6 225 46.2
HPP92_024716 Vanilla planifolia HOM05D003541 ORTHO05D004095 9.9e-43 177.6 234 46.6
Peaxi162Scf00804g00007 Petunia axillaris HOM05D003541 ORTHO05D004095 1.3e-42 177.2 215 50.2
PGR044G0196 Punica granatum HOM05D003541 ORTHO05D004095 1.7e-42 176.8 229 45.0
Nitab4.5_0002043g0080 Nicotiana tabacum HOM05D003541 ORTHO05D004095 2.2e-42 176.4 223 48.4
Sed0001727 Sechium edule HOM05D003541 ORTHO05D004095 4.9e-42 175.3 228 46.9
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 4.9e-42 175.3 215 47.9
ECA232G0305 Erigeron canadensis HOM05D003541 ORTHO05D004095 6.4e-42 174.9 227 47.1
Nitab4.5_0000208g0180 Nicotiana tabacum HOM05D003541 ORTHO05D004095 6.4e-42 174.9 223 48.4
Gorai.007G007200 Gossypium raimondii HOM05D003541 ORTHO05D004095 8.4e-42 174.5 226 46.5
Sed0000678 Sechium edule HOM05D003541 ORTHO05D004095 1.1e-41 174.1 225 47.1
CsaV3_1G006500 Cucumis sativus L. HOM05D003541 ORTHO05D004095 1.4e-41 173.7 229 47.6
Gohir.D11G006000 Gossypium hirsutum HOM05D003541 ORTHO05D004095 1.4e-41 173.7 226 46.0
Gohir.A11G006900 Gossypium hirsutum HOM05D003541 ORTHO05D004095 1.9e-41 173.3 226 46.0
ClCG04G011250 Citrullus lanatus HOM05D003541 ORTHO05D004095 2.4e-41 172.9 224 45.5
Phvul.002G315000 Phaseolus vulgaris HOM05D003541 ORTHO05D004095 9.3e-41 171.0 213 49.3
VMungo0251G0053 Vigna mungo HOM05D003541 ORTHO05D004095 9.3e-41 171.0 227 46.3
ATR0681G201 Amborella trichopoda HOM05D003541 ORTHO05D004095 1.6e-40 170.2 211 49.3
ECA246G2878 Erigeron canadensis HOM05D003541 ORTHO05D004095 2.1e-40 169.9 209 51.2
HanXRQChr16g0501761 Helianthus annuus HOM05D003541 ORTHO05D004095 3.5e-40 169.1 211 49.3
Nn4g23755 Nelumbo nucifera HOM05D003541 ORTHO05D004095 6.0e-40 168.3 202 50.0
MELO3C002077.2 Cucumis melo HOM05D003541 ORTHO05D004095 7.8e-40 167.9 234 45.3
SHI30433 Sapria himalayana HOM05D003541 ORTHO05D004095 3.9e-39 165.6 203 50.2
CDE04G1171 Ceratophyllum demersum HOM05D003541 ORTHO05D004095 2.5e-38 162.9 185 53.0
MBI16_g06256_MAGBIO Magnolia biondii HOM05D003541 ORTHO05D004095 3.3e-38 162.5 211 46.4
Dinv40426 Davidia involucrata HOM05D003541 ORTHO05D004095 1.3e-37 160.6 190 50.0
DCAR_011547 Daucus carota HOM05D003541 ORTHO05D004095 3.4e-35 152.5 215 45.6
SEGI_10894 Sequoiadendron giganteum HOM05D003541 ORTHO05D004095 1.7e-34 150.2 225 42.2
SGA_v2.0_scaffold25G10984 Striga asiatica HOM05D003541 ORTHO05D004095 1.4e-33 147.1 214 46.7
Gorai.007G007100 Gossypium raimondii HOM05D003541 ORTHO05D004095 1.9e-33 146.7 228 40.4
Gohir.A11G006800 Gossypium hirsutum HOM05D003541 ORTHO05D004095 2.4e-33 146.4 228 40.4
Pp3c8_18170 Physcomitrium patens HOM05D003541 ORTHO05D004095 1.6e-32 143.7 228 42.5
vmacro16455 Vaccinium macrocarpon HOM05D003541 ORTHO05D004095 2.1e-32 143.3 183 49.2
Gohir.D11G005950 Gossypium hirsutum HOM05D003541 ORTHO05D004095 2.7e-32 142.9 179 46.9
SMO164G0035 Selaginella moellendorffii HOM05D003541 ORTHO05D004095 1.3e-31 140.6 216 42.1
Mapoly0004s0087 Marchantia polymorpha HOM05D003541 ORTHO05D004095 1.9e-30 136.7 215 40.0
Pp3c20_9110 Physcomitrium patens HOM05D003541 ORTHO05D004095 2.5e-30 136.3 211 40.3
Pp3c18_6270 Physcomitrium patens HOM05D003541 ORTHO05D004095 2.6e-27 126.3 211 37.9
Pp3c19_13160 Physcomitrium patens HOM05D003541 ORTHO05D004095 1.1e-25 120.9 211 37.0
unitig_699.g19435 Utricularia gibba HOM05D003541 ORTHO05D004095 3.2e-25 119.4 138 50.7
BraA08t33137Z Brassica rapa HOM05D003541 ORTHO05D004095 1.3e-23 114.0 98 62.2
Glyma.08G040100 Glycine max HOM05D003541 ORTHO05D004095 8.7e-23 111.3 175 42.3
BraA08t33138Z Brassica rapa HOM05D003541 ORTHO05D107385 9.6e-22 107.8 58 91.4
CBR_g165 Chara braunii HOM05D003541 ORTHO05D004095 2.6e-19 99.8 222 32.4
AagrBONN_evm.TU.Sc2ySwM_362.2699 Anthoceros agrestis HOM05D003541 ORTHO05D004095 1.5e-14 84.0 118 44.1
Cre12.g541352 Chlamydomonas reinhardtii HOM05D003541 ORTHO05D004095 2.6e-11 73.2 154 33.8
CAN.G841.19 Capsicum annuum HOM05D003541 ORTHO05D004095 1.4e-09 67.4 85 47.1
unitig_699.g19434 Utricularia gibba HOM05D003541 ORTHO05D004095 2.5e-06 56.6 76 43.4


User provided reference genes

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