Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1813.5 913 100.0
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1813.5 913 100.0
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1745.7 935 94.7
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1743.4 936 94.8
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1609.0 939 85.7
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1586.2 942 85.8
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1585.9 930 86.7
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1582.0 930 86.6
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1582.0 930 86.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1580.1 941 84.5
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1553.5 938 83.3
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1550.8 938 83.0
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1543.1 938 82.1
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1541.2 938 82.8
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1515.0 937 82.6
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1375.9 935 75.0
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1316.6 749 87.9
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1270.8 918 70.3
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1169.5 941 64.5
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1167.9 946 63.8
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1160.2 940 62.6
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1159.8 943 63.3
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1154.4 927 62.9
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 940 63.0
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1145.2 980 60.5
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 943 62.4
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1140.9 933 61.7
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 944 62.4
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 935 63.2
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 935 62.9
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 935 62.7
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1135.2 929 62.2
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1133.2 943 61.6
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 945 62.0
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 936 60.9
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1122.1 965 61.1
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1120.5 961 60.8
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1119.8 928 61.7
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 943 60.8
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1118.6 951 60.6
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1118.2 915 63.4
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1113.2 913 62.9
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1112.1 940 60.1
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 916 62.4
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1108.6 931 62.3
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1108.2 948 61.1
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1105.9 943 61.0
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 928 62.4
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1101.7 972 59.8
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1101.3 952 60.6
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1097.8 914 61.4
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 922 61.9
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 926 61.2
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1094.0 953 60.3
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1093.2 917 61.8
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1092.8 940 60.1
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1089.7 921 60.8
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1085.1 917 60.4
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1083.2 922 60.0
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1082.8 1016 57.2
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 933 59.2
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1082.0 1017 56.5
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1080.9 1015 57.1
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 935 59.3
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 1016 56.9
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1075.5 939 59.6
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 2.5e-311 1072.0 903 59.9
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 5.6e-311 1070.8 933 60.3
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 2.7e-310 1068.5 934 59.6
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.4e-306 1054.3 861 63.3
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 5.4e-306 1054.3 940 59.3
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 9.2e-306 1053.5 1011 56.5
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 1.2e-305 1053.1 938 59.6
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 2.3e-304 1048.9 939 59.2
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 7.3e-303 1043.9 969 57.5
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 9.5e-303 1043.5 962 57.5
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 2.1e-302 1042.3 967 57.4
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 5.2e-301 1037.7 948 57.4
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 2.6e-300 1035.4 900 58.2
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 5.8e-300 1034.2 991 56.7
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 7.6e-300 1033.9 938 58.3
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 9.9e-300 1033.5 924 58.3
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.7e-299 1032.7 1036 55.2
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 2.2e-299 1032.3 935 57.8
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.2e-299 1032.3 756 69.4
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 8.4e-299 1030.4 929 59.3
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.7e-297 1025.4 944 58.5
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.0e-296 1023.5 931 59.1
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 1.7e-296 1022.7 908 57.4
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.4e-293 1012.3 935 57.2
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 4.0e-293 1011.5 959 56.1
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 6.9e-293 1010.7 926 57.0
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.8e-291 1005.0 902 57.8
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 6.4e-291 1004.2 850 64.0
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 6.4e-291 1004.2 1056 52.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.1e-290 1003.4 871 59.9
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 1.4e-290 1003.0 871 60.2
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 5.4e-290 1001.1 1051 51.9
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 2.4e-285 985.7 820 61.1
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 2.6e-284 982.2 938 56.3
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.3e-283 979.9 939 56.1
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 6.0e-281 971.1 860 58.8
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 1.0e-280 970.3 904 55.9
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 6.7e-280 967.6 931 53.9
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 2.2e-275 952.6 860 58.4
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.9e-275 952.2 966 53.0
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 8.4e-275 950.7 613 79.1
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.1e-274 947.6 1053 50.3
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 9.6e-271 937.2 948 52.8
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.4e-269 933.3 930 54.8
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 9.0e-269 930.6 1174 46.1
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 4.5e-268 928.3 801 61.5
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.8e-264 916.4 962 52.7
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 5.1e-264 914.8 953 52.3
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.4e-242 843.6 890 50.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.2e-242 842.4 906 51.1
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.0e-239 833.2 975 47.5
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 2.5e-234 816.2 823 50.9
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 2.0e-231 806.6 951 48.1
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.7e-228 796.2 682 61.9
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.7e-225 785.4 1113 41.3
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.6e-201 706.1 717 52.9
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.5e-186 657.5 634 56.3
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.2e-181 639.4 408 76.7
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 7.8e-180 635.2 643 54.3
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.3e-163 581.3 800 44.4
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 8.2e-153 545.4 357 73.4
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.0e-151 540.8 404 67.8
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 4.5e-151 539.7 390 70.3
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.1e-128 465.3 463 55.7
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.1e-120 437.2 296 70.9
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.3e-118 431.8 283 72.4
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 3.6e-116 423.7 566 46.5
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.2e-113 414.5 716 39.0
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.4e-112 411.8 286 69.6
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.5e-110 402.9 562 43.1
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.0e-102 379.0 277 65.3
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.9e-102 377.5 286 62.6
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.7e-97 361.7 321 56.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.4e-88 332.0 208 76.0
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 2.5e-77 294.7 166 89.8
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 2.9e-65 254.6 151 85.4
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.9e-51 206.8 139 66.9
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.1e-43 183.0 217 46.1
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 2.9e-41 174.9 137 63.5
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-31 142.9 103 67.0
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 6.7e-30 137.1 145 48.3
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 1.2e-26 126.3 116 50.9
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.0e-26 125.6 76 77.6
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.7e-25 122.5 160 44.4
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.9e-25 121.7 98 59.2
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.2e-18 99.8 66 69.7
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 1.7e-17 95.9 144 41.7
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.7e-17 95.9 280 34.3
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 5.5e-16 90.9 279 30.1
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.7e-15 88.6 66 65.2
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.3e-14 85.5 47 85.1
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.2e-12 79.0 82 50.0
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.4e-11 75.5 56 60.7
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.4e-11 75.5 56 60.7
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.2e-10 73.2 66 45.5
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 4.5e-10 71.2 56 58.9
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.8e-09 68.2 51 62.7
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.6e-07 62.8 43 62.8
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 3.6e-07 61.6 68 48.5
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 8.0e-07 60.5 62 48.4
BcaB04g18222 Brassica carinata HOM05D010251 ORTHO05D090319 1.4e-06 59.7 87 39.1
C05p49240 Brassica napus HOM05D019709 ORTHO05D001800 1.8e-06 59.3 46 65.2


User provided reference genes

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