Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 2.7e-283 978.0 492 100.0
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 7.0e-276 953.4 490 97.6
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.0e-274 949.5 494 97.0
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.0e-258 894.8 492 92.3
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 9.5e-257 889.8 488 91.4
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 9.5e-257 889.8 492 91.3
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.0e-254 882.1 491 90.8
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 2.6e-254 881.7 488 91.2
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 4.4e-254 880.9 491 90.8
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.3e-253 879.4 491 90.4
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.0e-250 869.8 488 89.8
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.0e-250 868.2 491 89.8
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 3.9e-250 867.8 496 88.3
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 3.9e-250 867.8 496 88.3
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 5.0e-250 867.5 496 88.1
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.1e-249 866.3 493 89.5
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 9.5e-249 863.2 493 88.2
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.8e-248 861.7 509 86.8
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.8e-248 861.7 491 88.4
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.8e-247 859.0 493 88.0
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-246 856.3 491 87.8
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 3.4e-246 854.7 502 86.5
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 4.4e-246 854.4 491 88.4
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 5.8e-246 854.0 491 87.6
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.7e-245 852.4 482 88.6
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 5.4e-244 847.4 494 87.2
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 7.3e-233 810.4 489 83.2
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 5.8e-222 774.2 496 78.8
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.3e-218 763.1 489 78.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 5.1e-218 761.1 527 76.1
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 2.4e-215 752.3 495 76.6
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 4.0e-215 751.5 500 76.4
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 5.3e-215 751.1 489 77.1
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.3e-213 746.5 492 76.0
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.8e-213 745.0 491 76.0
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.8e-213 745.0 495 76.2
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 6.4e-213 744.2 487 77.2
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 6.4e-213 744.2 492 76.8
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.4e-212 743.0 491 76.0
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.4e-212 742.3 494 75.7
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 3.2e-212 741.9 494 76.1
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 2.1e-211 739.2 494 75.5
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 3.5e-211 738.4 491 75.6
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 6.0e-211 737.6 474 77.4
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 6.0e-211 737.6 482 77.2
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.0e-210 736.9 491 75.4
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-210 736.5 495 75.8
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.8e-210 736.1 491 75.4
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.3e-210 735.7 488 74.8
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 3.0e-210 735.3 500 75.4
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 5.1e-210 734.6 486 76.1
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 6.7e-210 734.2 491 75.2
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 6.7e-210 734.2 494 74.1
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-209 733.4 476 77.3
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 1.9e-209 732.6 486 75.9
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.5e-209 732.3 492 74.8
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 5.6e-209 731.1 495 73.9
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.4e-209 730.7 492 74.6
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 7.4e-209 730.7 493 74.8
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 9.6e-209 730.3 488 75.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.3e-208 729.9 495 74.9
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.1e-207 726.9 487 74.3
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.8e-207 726.1 485 75.5
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.8e-207 726.1 492 74.6
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 6.9e-207 724.2 491 73.9
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.0e-206 722.6 489 73.8
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 2.0e-206 722.6 499 73.3
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.6e-206 722.2 492 74.4
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 3.4e-206 721.8 478 75.3
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.0e-205 720.3 483 75.8
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.0e-205 720.3 483 75.8
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.7e-205 719.5 496 73.8
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 6.5e-205 717.6 478 75.5
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 8.4e-205 717.2 490 73.7
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 8.4e-205 717.2 488 74.4
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 1.4e-204 716.5 488 75.2
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.9e-204 716.1 512 71.1
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 5.5e-204 714.5 478 74.7
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 9.3e-204 713.8 491 73.5
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 9.3e-204 713.8 485 74.8
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 4.6e-203 711.4 479 73.3
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 7.9e-203 710.7 489 72.8
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.8e-202 709.5 489 72.4
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.3e-202 709.1 489 72.4
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 6.7e-202 707.6 493 73.0
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 2.5e-201 705.7 477 73.8
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.8e-200 702.2 491 72.7
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 6.3e-200 701.0 492 72.4
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 4.1e-199 698.4 521 69.5
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.3e-199 698.0 479 72.4
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.5e-198 694.9 488 71.3
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 4.2e-196 688.3 483 72.3
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.1e-195 686.0 481 71.3
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.1e-195 686.0 481 71.3
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 3.6e-195 685.3 361 95.8
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 7.9e-195 684.1 498 69.7
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 3.3e-193 678.7 494 70.9
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 3.3e-193 678.7 481 70.3
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 7.4e-193 677.6 529 67.5
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 4.1e-191 671.8 492 68.1
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.5e-190 669.8 494 69.2
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.4e-188 663.3 450 73.1
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 5.5e-188 661.4 486 67.1
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.1e-187 659.4 493 70.0
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.4e-186 656.8 498 66.1
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.5e-185 653.3 517 65.6
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 8.2e-184 647.5 485 67.4
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.4e-183 646.7 474 68.1
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.4e-183 646.0 579 59.9
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 2.9e-181 639.0 488 65.6
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 3.8e-181 638.6 482 66.6
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 8.5e-181 637.5 495 62.8
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.4e-180 636.7 489 66.3
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 3.2e-180 635.6 570 61.1
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 9.4e-180 634.0 482 67.8
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.0e-178 630.6 503 61.4
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.4e-178 630.2 487 66.5
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.8e-178 629.8 496 66.9
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 8.2e-176 620.9 483 64.8
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.2e-173 612.8 481 65.9
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.9e-173 612.5 474 66.0
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.9e-172 609.8 489 66.7
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.2e-172 609.0 491 65.6
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 9.4e-172 607.4 485 64.9
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.3e-165 587.0 401 73.8
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 6.8e-162 574.7 501 62.7
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.2e-160 569.7 503 58.3
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 3.7e-160 568.9 449 62.8
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-155 553.9 494 58.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.3e-154 549.7 378 74.3
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-145 520.8 392 69.4
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.4e-145 518.8 357 74.2
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 9.8e-145 517.7 398 66.3
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 2.2e-144 516.5 553 53.9
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.4e-143 513.1 355 74.4
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.1e-143 512.3 344 75.6
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 2.7e-142 509.6 370 72.2
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.8e-139 499.6 393 67.4
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 8.3e-128 461.5 356 68.3
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 4.1e-127 459.1 468 53.0
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 9.9e-121 438.0 303 74.3
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.0e-117 426.4 399 59.4
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.9e-112 409.8 280 72.9
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-111 407.9 272 75.4
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 6.0e-110 402.1 275 74.2
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 6.1e-86 322.4 461 40.1
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 7.9e-86 322.0 235 71.5
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 9.4e-79 298.5 244 66.0
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.1e-78 295.8 188 78.2
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.5e-73 279.6 181 74.6
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 1.4e-71 274.6 140 100.0
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 6.1e-70 269.2 204 68.6
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 4.7e-62 243.0 200 61.0
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 4.0e-53 213.4 228 52.6
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 5.2e-53 213.0 144 72.9
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.2e-52 211.8 250 48.8
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 7.0e-50 202.6 153 69.3
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.6e-49 201.4 126 77.8
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 2.2e-48 197.6 134 73.1
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.3e-43 181.8 255 46.7
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.3e-40 171.0 114 71.9
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.1e-38 164.5 122 67.2
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.7e-35 154.8 94 75.5
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.7e-35 154.8 94 75.5
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.2e-35 154.5 114 67.5
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-33 148.7 124 58.9
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.2e-25 122.1 69 85.5
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 3.9e-24 117.1 63 88.9
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.1e-23 115.5 66 84.8
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.3e-23 113.6 72 75.0
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 2.8e-22 110.9 97 61.9
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.8e-21 108.2 65 83.1
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.3e-21 107.8 67 76.1
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.5e-20 105.1 65 80.0
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.4e-20 103.6 65 78.5
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.2e-19 101.3 65 83.1
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.2e-17 95.5 77 67.5
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 2.7e-17 94.4 107 52.3
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 6.0e-17 93.2 181 36.5
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.5e-12 78.6 48 66.7
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 2.1e-09 68.2 37 81.1
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 1.1e-07 62.4 37 81.1
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 3.3e-07 60.8 36 80.6
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 3.3e-07 60.8 36 80.6
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 4.7e-06 57.0 48 70.8
Zm00001eb170120 Zea mays HOM05D000137 ORTHO05D014725 8.1e-06 56.2 59 49.2
Zm00001eb388940 Zea mays HOM05D004043 ORTHO05D002193 8.1e-06 56.2 59 49.2


User provided reference genes

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