Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 2.2e-31 138.3 67 100.0
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.8e-25 118.6 57 100.0
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 5.3e-25 117.1 57 98.2
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.6e-24 114.8 57 96.5
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.8e-20 102.1 79 69.6
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.8e-20 102.1 79 69.6
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.8e-20 102.1 79 69.6
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.8e-20 102.1 79 69.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 1.8e-20 102.1 79 69.6
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 3.9e-20 100.9 79 68.4
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 6.7e-20 100.1 85 64.7
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 8.1e-18 93.2 81 65.4
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.6e-13 79.0 103 49.5
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.6e-13 79.0 103 49.5
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 2.1e-13 78.6 103 49.5
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 7.9e-13 76.6 103 48.5
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 6.7e-12 73.6 103 45.6
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 6.7e-12 73.6 103 45.6
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 8.7e-12 73.2 103 45.6
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 8.7e-12 73.2 103 45.6
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 8.7e-12 73.2 102 46.1
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.5e-11 72.4 37 97.3
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 2.5e-11 71.6 99 46.5
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 3.3e-11 71.2 105 47.6
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 4.3e-11 70.9 103 44.7
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.6e-10 68.9 35 97.1
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 4.8e-10 67.4 103 42.7
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 1.8e-09 65.5 35 94.3
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 3.1e-09 64.7 103 41.7
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 3.1e-09 64.7 62 59.7
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 4.0e-09 64.3 104 43.3
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 6.9e-09 63.5 100 45.0
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 7.6e-08 60.1 58 58.6
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.9e-07 58.2 43 74.4
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 2.9e-07 58.2 58 51.7
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.9e-07 58.2 58 51.7
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.9e-07 58.2 58 51.7
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 2.9e-07 58.2 58 53.4
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 3.8e-07 57.8 57 56.1
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 4.9e-07 57.4 67 47.8
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.9e-07 57.4 59 55.9
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 6.5e-07 57.0 58 55.2
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 6.5e-07 57.0 58 55.2
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 6.5e-07 57.0 58 53.4
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 8.4e-07 56.6 58 56.9
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 8.4e-07 56.6 58 55.2
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 8.4e-07 56.6 57 57.9
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 8.4e-07 56.6 58 55.2
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 8.4e-07 56.6 58 55.2
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 8.4e-07 56.6 58 55.2
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.1e-06 56.2 60 53.3
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.1e-06 56.2 60 53.3
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.4e-06 55.8 58 51.7
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.9e-06 55.5 58 53.4
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.9e-06 55.5 57 56.1
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.5e-06 55.1 58 51.7
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 2.5e-06 55.1 58 53.4
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 2.5e-06 55.1 58 51.7
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 2.5e-06 55.1 58 51.7
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.2e-06 54.7 67 46.3
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 3.2e-06 54.7 58 51.7
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.2e-06 54.7 61 50.8
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 3.2e-06 54.7 57 52.6
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.2e-06 54.7 58 51.7
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 4.2e-06 54.3 58 50.0
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 4.2e-06 54.3 62 50.0
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 4.2e-06 54.3 58 51.7
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 4.2e-06 54.3 58 51.7
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 5.5e-06 53.9 58 50.0
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 5.5e-06 53.9 58 50.0
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 5.5e-06 53.9 58 51.7
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 5.5e-06 53.9 58 53.4
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 5.5e-06 53.9 58 51.7
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 5.5e-06 53.9 58 51.7
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 5.5e-06 53.9 58 51.7
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 5.5e-06 53.9 58 51.7
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 5.5e-06 53.9 58 51.7
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 7.1e-06 53.5 58 50.0
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 7.1e-06 53.5 58 51.7
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 7.1e-06 53.5 43 65.1
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 7.1e-06 53.5 58 50.0
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 7.1e-06 53.5 58 51.7
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 7.1e-06 53.5 58 50.0
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 7.1e-06 53.5 35 74.3
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 9.3e-06 53.1 58 50.0
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 9.3e-06 53.1 58 48.3
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 9.3e-06 53.1 58 50.0
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 9.3e-06 53.1 58 51.7
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 9.3e-06 53.1 58 51.7
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 9.3e-06 53.1 58 51.7
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 9.3e-06 53.1 58 51.7


User provided reference genes

Program Settings