Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 4.0e-128 461.5 237 100.0
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 4.0e-128 461.5 237 100.0
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 1.1e-125 453.4 237 98.3
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 3.3e-122 441.8 237 95.4
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 6.9e-120 434.1 227 96.9
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 6.9e-120 434.1 237 92.8
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 1.4e-117 426.4 237 90.3
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 2.4e-112 409.1 237 86.1
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 5.3e-112 407.9 237 87.3
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 6.9e-112 407.5 236 86.0
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 1.4e-109 399.8 238 85.3
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 2.8e-105 385.6 237 81.4
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 1.3e-99 366.7 237 77.6
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 3.8e-86 322.0 237 67.9
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 7.2e-85 317.8 235 65.5
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 6.1e-84 314.7 235 65.5
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 1.4e-83 313.5 235 65.1
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 2.3e-83 312.8 235 65.5
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 3.9e-83 312.0 237 66.2
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 3.9e-83 312.0 234 65.8
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 5.1e-83 311.6 236 66.1
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 4.4e-82 308.5 237 66.2
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 9.7e-82 307.4 237 65.8
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 1.7e-81 306.6 224 68.3
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 2.2e-81 306.2 237 65.4
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 2.8e-81 305.8 233 65.2
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 4.8e-81 305.1 232 66.4
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 1.4e-80 303.5 232 65.1
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 1.8e-80 303.1 231 65.4
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 2.4e-80 302.8 234 65.0
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 3.1e-80 302.4 236 64.0
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 4.1e-80 302.0 237 60.8
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 9.1e-80 300.8 231 64.9
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 2.6e-79 299.3 232 63.4
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 4.5e-79 298.5 237 63.3
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 7.7e-79 297.7 226 63.3
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 7.7e-79 297.7 234 62.4
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 1.0e-78 297.4 236 61.4
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.0e-78 297.4 230 63.0
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 1.3e-78 297.0 213 70.4
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 2.2e-78 296.2 236 61.0
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 2.2e-78 296.2 240 62.9
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 2.9e-78 295.8 237 63.3
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 2.9e-78 295.8 236 63.6
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 2.9e-78 295.8 236 62.3
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 5.0e-78 295.0 230 63.9
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 8.5e-78 294.3 237 61.6
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 1.9e-77 293.1 254 59.1
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 2.5e-77 292.7 226 63.7
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 2.5e-77 292.7 227 62.6
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 4.2e-77 292.0 234 61.1
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 5.5e-77 291.6 240 61.7
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 5.5e-77 291.6 234 60.7
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 7.2e-77 291.2 234 60.7
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 9.4e-77 290.8 237 61.6
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 9.4e-77 290.8 234 60.7
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 1.2e-76 290.4 231 63.2
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 1.6e-76 290.0 234 60.3
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 2.1e-76 289.7 214 66.8
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 2.7e-76 289.3 233 60.1
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 4.7e-76 288.5 237 60.8
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 1.4e-75 287.0 222 62.6
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 2.3e-75 286.2 238 58.8
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 8.8e-75 284.3 224 62.5
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 8.8e-75 284.3 226 59.7
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 1.1e-74 283.9 219 64.4
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 1.5e-74 283.5 234 59.8
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 1.5e-74 283.5 237 59.9
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 1.5e-74 283.5 235 61.7
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 2.6e-74 282.7 227 60.4
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 3.3e-74 282.3 237 59.9
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 2.8e-73 279.3 231 59.7
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 4.8e-73 278.5 229 59.4
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 8.2e-73 277.7 232 60.8
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 1.1e-72 277.3 236 61.9
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 1.4e-72 276.9 220 63.6
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 5.3e-72 275.0 229 59.0
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 7.0e-72 274.6 225 58.7
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 1.6e-71 273.5 240 55.0
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 7.7e-71 271.2 229 59.8
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 1.3e-70 270.4 221 59.7
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 2.9e-70 269.2 229 57.2
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 3.8e-70 268.9 222 59.0
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 6.5e-70 268.1 237 57.8
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 1.1e-69 267.3 229 61.6
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 1.5e-69 266.9 238 56.3
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 1.2e-68 263.8 238 54.2
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 2.7e-68 262.7 240 58.3
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 1.4e-67 260.4 222 58.1
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 1.8e-67 260.0 207 59.9
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 2.3e-67 259.6 213 57.7
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 6.3e-65 251.5 225 57.3
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 1.2e-63 247.3 255 51.4
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 1.1e-56 224.2 231 50.6
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 1.3e-54 217.2 224 50.9
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 3.2e-48 196.1 152 61.8
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 3.2e-48 196.1 186 55.4
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 4.5e-47 192.2 152 65.8
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 6.6e-46 188.3 227 43.6
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 1.8e-43 180.3 212 42.9
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 2.6e-42 176.4 159 56.0
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 1.7e-41 173.7 149 55.7
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 2.3e-38 163.3 227 37.4
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 5.6e-37 158.7 236 41.5
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 5.6e-37 158.7 139 53.2
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 1.7e-33 147.1 218 35.8
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 1.1e-32 144.4 217 35.5
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 5.4e-32 142.1 221 35.7
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 5.6e-29 132.1 119 53.8
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 2.6e-26 123.2 89 65.2
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 7.6e-26 121.7 163 39.9
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 4.6e-23 112.5 110 52.7
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 3.3e-21 106.3 72 63.9
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 5.8e-18 95.5 202 31.2
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 1.7e-09 67.4 70 54.3
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 1.7e-09 67.4 70 54.3
Rhsim07G0033200 Rhododendron simsii HOM05D006089 ORTHO05D007345 1.2e-07 61.2 91 36.3
MD15G1370600 Malus domestica HOM05D006862 ORTHO05D008726 3.5e-07 59.7 43 62.8


User provided reference genes

Program Settings