Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 2.3e-91 339.0 184 100.0
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 2.3e-91 339.0 184 100.0
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 2.0e-90 335.9 184 98.9
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 1.3e-89 333.2 184 98.9
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 1.3e-89 333.2 184 98.9
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 1.1e-88 330.1 184 97.3
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 8.0e-84 313.9 169 93.5
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 3.4e-82 308.5 184 86.4
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 2.2e-81 305.8 184 85.3
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 2.4e-80 302.4 184 87.0
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 5.4e-80 301.2 184 84.2
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 1.7e-78 296.2 184 85.3
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 1.7e-73 279.6 184 81.0
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 4.3e-69 265.0 184 76.1
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 3.6e-60 235.3 171 68.4
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 6.2e-60 234.6 172 67.4
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 1.1e-59 233.8 168 67.9
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 1.4e-59 233.4 160 70.0
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 4.0e-59 231.9 168 66.7
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 6.9e-59 231.1 182 65.9
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.5e-58 229.9 172 65.7
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 2.0e-58 229.6 164 68.3
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 1.7e-57 226.5 168 65.5
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 2.2e-57 226.1 172 64.5
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 2.2e-57 226.1 168 65.5
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.9e-57 225.7 169 66.3
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 4.9e-57 224.9 172 64.5
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 4.9e-57 224.9 164 64.6
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 6.4e-57 224.6 172 64.5
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 6.4e-57 224.6 169 65.7
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 6.4e-57 224.6 168 67.3
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 3.2e-56 222.2 166 64.5
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 3.2e-56 222.2 167 63.5
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 3.2e-56 222.2 165 64.8
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 3.2e-56 222.2 162 65.4
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 5.4e-56 221.5 169 64.5
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 7.1e-56 221.1 168 66.1
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 7.1e-56 221.1 167 67.1
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 9.3e-56 220.7 160 67.5
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 1.2e-55 220.3 169 65.1
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 1.2e-55 220.3 168 64.3
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 1.6e-55 219.9 166 63.9
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 1.6e-55 219.9 163 65.0
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 2.1e-55 219.5 172 64.5
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 2.7e-55 219.2 167 63.5
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 2.7e-55 219.2 171 62.6
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 2.7e-55 219.2 171 63.2
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 3.5e-55 218.8 172 64.0
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 3.5e-55 218.8 162 66.0
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 4.6e-55 218.4 167 62.9
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 7.9e-55 217.6 169 64.5
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 1.0e-54 217.2 167 59.9
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 1.0e-54 217.2 166 63.3
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 1.0e-54 217.2 165 65.5
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 1.3e-54 216.9 163 63.8
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 1.7e-54 216.5 170 63.5
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 3.0e-54 215.7 164 64.0
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 3.9e-54 215.3 170 64.1
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 5.1e-54 214.9 164 65.2
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 8.7e-54 214.2 171 58.5
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 2.5e-53 212.6 167 64.7
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 3.3e-53 212.2 167 64.1
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 3.3e-53 212.2 148 68.9
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 5.6e-53 211.5 162 63.0
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 7.3e-53 211.1 168 60.1
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 9.6e-53 210.7 161 63.4
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 9.6e-53 210.7 172 63.4
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 1.3e-52 210.3 162 63.0
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 1.6e-52 209.9 165 65.5
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 1.6e-52 209.9 185 59.5
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 3.6e-52 208.8 169 60.4
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 3.6e-52 208.8 168 59.5
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 3.6e-52 208.8 165 60.6
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 6.2e-52 208.0 162 63.6
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 6.2e-52 208.0 178 59.6
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 8.1e-52 207.6 149 69.1
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 1.2e-50 203.8 160 63.1
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 1.5e-50 203.4 169 60.4
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 1.7e-49 199.9 167 61.1
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 8.4e-49 197.6 164 60.4
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 1.1e-48 197.2 169 60.9
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 2.4e-48 196.1 232 46.1
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 6.0e-47 191.4 151 60.3
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 3.0e-46 189.1 170 56.5
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 5.1e-46 188.3 138 65.2
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 6.7e-46 188.0 130 66.2
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 8.7e-46 187.6 152 61.2
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 4.3e-45 185.3 139 65.5
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 1.1e-43 180.6 129 65.9
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 5.3e-43 178.3 119 71.4
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 5.8e-42 174.9 118 70.3
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 1.1e-40 170.6 119 68.1
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 8.7e-38 161.0 154 53.9
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 2.5e-37 159.5 177 50.8
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 1.0e-33 147.5 127 57.5
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.3e-33 147.1 176 48.9
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 3.2e-32 142.5 162 48.8
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 9.3e-32 141.0 185 42.2
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 6.1e-31 138.3 147 47.6
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 2.5e-24 116.3 83 63.9
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 4.2e-24 115.5 172 39.5
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 1.6e-23 113.6 84 67.9
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 4.3e-21 105.5 128 46.1
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.7e-20 103.6 178 41.6
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 2.2e-20 103.2 157 34.4
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 3.7e-20 102.4 74 63.5
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.6e-18 96.3 69 63.8
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 9.4e-16 87.8 137 37.2
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 2.1e-15 86.7 59 66.1
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 1.3e-12 77.4 69 56.5
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 4.0e-06 55.8 40 62.5
SHI07962 Sapria himalayana HOM05D007018 ORTHO05D008887 8.8e-06 54.7 39 64.1


User provided reference genes

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