Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 9.6e-50 199.9 104 100.0
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 9.6e-50 199.9 104 100.0
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 9.6e-50 199.9 104 100.0
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 1.7e-22 109.4 74 77.0
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 8.4e-22 107.1 76 73.7
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 4.2e-21 104.8 74 77.0
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 5.5e-21 104.4 74 77.0
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 9.3e-21 103.6 74 77.0
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 1.6e-20 102.8 74 75.7
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 2.1e-20 102.4 74 77.0
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 6.1e-20 100.9 78 78.2
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 7.9e-20 100.5 79 77.2
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 1.0e-19 100.1 75 81.3
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 1.0e-19 100.1 75 81.3
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 3.0e-19 98.6 78 69.2
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 3.9e-19 98.2 74 79.7
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 2.5e-18 95.5 54 88.9
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 2.5e-18 95.5 54 88.9
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 1.6e-17 92.8 78 75.6
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 1.6e-17 92.8 78 75.6
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 2.8e-17 92.0 54 85.2
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 2.8e-17 92.0 54 85.2
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 2.8e-17 92.0 54 85.2
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 4.8e-17 91.3 54 85.2
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 6.3e-17 90.9 77 74.0
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 6.3e-17 90.9 54 85.2
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 6.3e-17 90.9 54 85.2
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 4.1e-16 88.2 74 63.5
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 2.5e-13 79.0 62 62.9
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 3.2e-13 78.6 58 63.8
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 7.2e-13 77.4 85 49.4
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 7.2e-13 77.4 58 65.5
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 1.6e-12 76.3 58 63.8
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 2.7e-12 75.5 58 62.1
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 3.6e-12 75.1 58 63.8
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 3.6e-12 75.1 58 62.1
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 4.6e-12 74.7 59 62.7
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 4.6e-12 74.7 58 63.8
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 6.1e-12 74.3 58 63.8
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 1.0e-11 73.6 58 62.1
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 1.0e-11 73.6 76 48.7
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 1.4e-11 73.2 58 62.1
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 2.3e-11 72.4 58 58.6
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.3e-11 72.4 59 62.7
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.3e-11 72.4 59 59.3
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 2.3e-11 72.4 58 58.6
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 5.1e-11 71.2 58 60.3
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.5e-10 69.7 58 58.6
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 2.0e-10 69.3 59 59.3
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 4.3e-10 68.2 95 42.1
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 4.3e-10 68.2 60 58.3
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 5.7e-10 67.8 58 56.9
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.7e-10 67.8 95 41.1
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.7e-10 67.8 95 41.1
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 7.4e-10 67.4 53 62.3
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 7.4e-10 67.4 58 55.2
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 9.7e-10 67.0 61 54.1
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 9.7e-10 67.0 70 50.0
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 9.7e-10 67.0 56 53.6
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.7e-09 66.2 46 67.4
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.2e-09 65.9 58 53.4
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 2.2e-09 65.9 58 56.9
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 2.8e-09 65.5 58 53.4
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 2.8e-09 65.5 58 56.9
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 2.8e-09 65.5 105 41.0
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.8e-09 65.5 61 55.7
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.8e-09 65.5 58 56.9
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 2.8e-09 65.5 55 56.4
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 2.8e-09 65.5 58 53.4
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 3.7e-09 65.1 58 53.4
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 3.7e-09 65.1 58 53.4
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 3.7e-09 65.1 80 45.0
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 3.7e-09 65.1 80 45.0
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 3.7e-09 65.1 57 52.6
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 8.2e-09 63.9 61 50.8
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 1.1e-08 63.5 82 52.4
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.4e-08 63.2 60 53.3
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.4e-08 63.2 60 53.3
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.4e-08 63.2 60 53.3
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 1.8e-08 62.8 58 53.4
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 1.8e-08 62.8 57 52.6
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 2.4e-08 62.4 62 56.5
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 2.4e-08 62.4 59 50.8
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.4e-08 62.4 96 42.7
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 2.4e-08 62.4 58 55.2
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 3.1e-08 62.0 54 55.6
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 3.1e-08 62.0 56 55.4
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 3.1e-08 62.0 56 55.4
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 4.1e-08 61.6 65 52.3
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 5.3e-08 61.2 66 47.0
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 5.3e-08 61.2 63 57.1
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 9.1e-08 60.5 77 44.2
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 1.2e-07 60.1 43 60.5
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 1.2e-07 60.1 57 54.4
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 1.5e-07 59.7 56 48.2
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 2.0e-07 59.3 55 49.1
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 2.6e-07 58.9 53 56.6
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 2.6e-07 58.9 58 51.7
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 4.5e-07 58.2 59 52.5
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 5.9e-07 57.8 58 51.7
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 5.9e-07 57.8 58 51.7
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 1.3e-06 56.6 81 43.2
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.3e-06 56.6 55 49.1
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 1.7e-06 56.2 38 60.5
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 1.7e-06 56.2 38 65.8
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 2.2e-06 55.8 77 37.7
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 3.8e-06 55.1 40 62.5
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 3.8e-06 55.1 38 63.2
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 3.8e-06 55.1 57 47.4
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 5.0e-06 54.7 58 43.1
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 8.5e-06 53.9 61 45.9
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 8.5e-06 53.9 58 50.0


User provided reference genes

Program Settings